| 961 | -- | 967 | Birte Kehr, Páll Melsted, Bjarni V. Halldórsson. PopIns: population-scale detection of novel sequence insertions |
| 968 | -- | 975 | Simona Constantinescu, Ewa Szczurek, Pejman Mohammadi, Jörg Rahnenführer, Niko Beerenwinkel. TiMEx: a waiting time model for mutually exclusive cancer alterations |
| 976 | -- | 983 | Monica Golumbeanu, Pejman Mohammadi, Niko Beerenwinkel. BMix: probabilistic modeling of occurring substitutions in PAR-CLIP data |
| 984 | -- | 992 | Daria Iakovishina, Isabelle Janoueix-Lerosey, Emmanuel Barillot, Mireille Régnier, Valentina Boeva. SV-Bay: structural variant detection in cancer genomes using a Bayesian approach with correction for GC-content and read mappability |
| 993 | -- | 1000 | Jie Ren, Kai Song, Minghua Deng, Gesine Reinert, Charles H. Cannon, Fengzhu Sun. Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics |
| 1001 | -- | 1008 | Yuzhen Ye, Haixu Tang. Utilizing de Bruijn graph of metagenome assembly for metatranscriptome analysis |
| 1009 | -- | 1015 | Dmitry Antipov, Anton Korobeynikov, Jeffrey S. McLean, Pavel A. Pevzner. hybridSPAdes: an algorithm for hybrid assembly of short and long reads |
| 1016 | -- | 1022 | Lee Mendelowitz, David C. Schwartz, Mihai Pop. Maligner: a fast ordered restriction map aligner |
| 1023 | -- | 1032 | Kevin Vervier, Pierre Mahé, Maud Tournoud, Jean-Baptiste Veyrieras, Jean-Philippe Vert. Large-scale machine learning for metagenomics sequence classification |
| 1033 | -- | 1039 | Laura DiChiacchio, Michael F. Sloma, David H. Mathews. AccessFold: predicting RNA-RNA interactions with consideration for competing self-structure |
| 1040 | -- | 1047 | Martina Fischer, Bernhard Y. Renard. iPQF: a new peptide-to-protein summarization method using peptide spectra characteristics to improve protein quantification |
| 1048 | -- | 1056 | Anna Paola Carrieri, Filippo Utro, Laxmi Parida. Sampling ARG of multiple populations under complex configurations of subdivision and admixture |
| 1057 | -- | 1064 | Zhanchao Li, Meng-Hua Huang, Wen-Qian Zhong, Zhi-Qing Liu, Yun Xie, Zong Dai, Xiaoyong Zou. Identification of drug-target interaction from interactome network with 'guilt-by-association' principle and topology features |
| 1065 | -- | 1073 | Wim Verleyen, Sara Ballouz, Jesse Gillis. Positive and negative forms of replicability in gene network analysis |
| 1074 | -- | 1079 | Suzanne M. Paley, Markus Krummenacker, Peter D. Karp. Representation and inference of cellular architecture for metabolic reconstruction and modeling |
| 1080 | -- | 1082 | Nour-al-dain Marzouka, Jessica Nordlund, Christofer L. Bäcklin, Gudmar Lönnerholm, Ann-Christine Syvänen, Jonas Carlsson Almlöf. CopyNumber450kCancer: baseline correction for accurate copy number calling from the 450k methylation array |
| 1083 | -- | 1084 | Thomas Lacroix, Sylvie Thérond, Marc Rugeri, Pierre Nicolas, Annie Gendrault, Valentin Loux, Jean-François Gibrat. Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT |
| 1085 | -- | 1087 | Andrea Franceschini, Jianyi Lin, Christian von Mering, Lars Juhl Jensen. SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles |
| 1088 | -- | 1090 | Alla Mikheenko, Vladislav Saveliev, Alexey A. Gurevich. MetaQUAST: evaluation of metagenome assemblies |
| 1091 | -- | 1093 | Denis Seyres, Elodie Darbo, Laurent Perrin, Carl Herrmann, Aitor González. LedPred: an R/bioconductor package to predict regulatory sequences using support vector machines |
| 1094 | -- | 1096 | Jun Cheng, Franziska Metge, Christoph Dieterich. Specific identification and quantification of circular RNAs from sequencing data |
| 1097 | -- | 1099 | Deena M. A. Gendoo, Natchar Ratanasirigulchai, Markus S. Schröder, Laia Paré, Joel S. Parker, Aleix Prat, Benjamin Haibe-Kains. Genefu: an R/Bioconductor package for computation of gene expression-based signatures in breast cancer |
| 1100 | -- | 1102 | Chee Lee, Snehal Patil, Maureen A. Sartor. RNA-Enrich: a cut-off free functional enrichment testing method for RNA-seq with improved detection power |
| 1103 | -- | 1105 | Rongfeng Cui, Molly Schumer, Gil G. Rosenthal. Admix'em: a flexible framework for forward-time simulations of hybrid populations with selection and mate choice |
| 1106 | -- | 1108 | Gilles Guillot, Hákon Jónsson, Antoine Hinge, Nabil Manchih, Ludovic Orlando. Accurate continuous geographic assignment from low- to high-density SNP data |
| 1109 | -- | 1111 | Lars Barquist, Matthew Mayho, Carla A. Cummins, Amy K. Cain, Christine J. Boinett, Andrew J. Page, Gemma C. Langridge, Michael A. Quail, Jacqueline A. Keane, Julian Parkhill. The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries |
| 1112 | -- | 1114 | Christopher Schmied, Peter Steinbach, Tobias Pietzsch, Stephan Preibisch, Pavel Tomancak. An automated workflow for parallel processing of large multiview SPIM recordings |
| 1115 | -- | 1117 | Sebastian Deorowicz, Szymon Grabowski, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman. Comment on: 'ERGC: an efficient referential genome compression algorithm' |
| 1118 | -- | 1119 | Subrata Saha, Sanguthevar Rajasekaran. Authors' response to 'Comment on: ERGC: An efficient Referential Genome Compression Algorithm' |
| 1120 | -- | 0 | Paulo Gaspar, José Luís Oliveira, Jörg Frommlet, Manuel A. S. Santos, Gabriela R. Moura. EuGene: maximizing synthetic gene design for heterologous expression |