Journal: Bioinformatics

Volume 33, Issue 2

151 -- 154Ahmed Arslan, Vera van Noort. Evolutionary conservation of Ebola virus proteins predicts important functions at residue level
155 -- 160Niko Popitsch, WGS500 Consortium, Anna Schuh, Jenny C. Taylor. ReliableGenome: annotation of genomic regions with high/low variant calling concordance
161 -- 168Xiao Wang, Jinghua Gu, Leena Hilakivi-Clarke, Robert Clarke, Jianhua Xuan. DM-BLD: differential methylation detection using a hierarchical Bayesian model exploiting local dependency
169 -- 176Junwei Luo, Jianxin Wang, Zhen Zhang, Min Li, Fang-Xiang Wu. BOSS: a novel scaffolding algorithm based on an optimized scaffold graph
177 -- 183Xi Chen, Xu Shi, Leena Hilakivi-Clarke, Ayesha N. Shajahan-Haq, Robert Clarke, Jianhua Xuan. PSSV: a novel pattern-based probabilistic approach for somatic structural variation identification
184 -- 191Ying Liang, Kunlong Qiu, Bo Liao, Wen Zhu, Xuanlin Huang, Lin Li, Xiangtao Chen, Keqin Li. Seeksv: an accurate tool for somatic structural variation and virus integration detection
192 -- 201Bo Liu, Yan Gao, Yadong Wang. LAMSA: fast split read alignment with long approximate matches
202 -- 209Yuki Kato, Tomoya Mori, Kengo Sato, Shingo Maegawa, Hiroshi Hosokawa, Tatsuya Akutsu. An accessibility-incorporated method for accurate prediction of RNA-RNA interactions from sequence data
210 -- 218Irene Rodríguez-Luján, Jeff Hasty, Ramón Huerta. FBB: a fast Bayesian-bound tool to calibrate RNA-seq aligners
219 -- 226M. Altenbuchinger, T. Rehberg, H. U. Zacharias, F. Stämmler, K. Dettmer, D. Weber, A. Hiergeist, A. Gessner, E. Holler, Peter J. Oefner, R. Spang. Reference point insensitive molecular data analysis
227 -- 234Joseph Azofeifa, Robin D. Dowell. A generative model for the behavior of RNA polymerase
235 -- 242Chunxuan Shao, Thomas Höfer. Robust classification of single-cell transcriptome data by nonnegative matrix factorization
243 -- 247Wenyu Wang, Jingcan Hao, Shuyu Zheng, Qianrui Fan, Awen He, Yan Wen, Xiong Guo, Cuiyan Wu, Sen Wang, Tielin Yang, Hui Shen, Xiangding Chen, Qing Tian, Lijun Tan, Hong-Wen Deng, Feng Zhang. Tissue-specific pathway association analysis using genome-wide association study summaries
248 -- 255Gleb Kichaev, Megan Roytman, Ruth Johnson, Eleazar Eskin, Sara Lindström, Peter Kraft, Bogdan Pasaniuc. Improved methods for multi-trait fine mapping of pleiotropic risk loci
256 -- 265Yan Yan, Shangzhao Qiu, Zhuxuan Jin, Sihong Gong, Yun Bai, Jianwei Lu, Tianwei Yu. Detecting subnetwork-level dynamic correlations
266 -- 271Muhammad Shoaib, Adnan Ahmad Ansari, Sung-Min Ahn. cMapper: gene-centric connectivity mapper for EBI-RDF platform
272 -- 279Jie Zheng, Mesut A. Erzurumluoglu, Benjamin L. Elsworth, John P. Kemp, Laurence Howe, Philip C. Haycock, Gibran Hemani, Katherine Tansey, Charles Laurin, Early Genetics, Lifecourse Epidemiology (EAGLE) Eczema Consortium, Beate St. Pourcain, Nicole M. Warrington, Hilary K. Finucane, Alkes L. Price, Brendan K. Bulik-Sullivan, Verneri Anttila, Lavinia Paternoster, Tom R. Gaunt, David M. Evans, Benjamin M. Neale. LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis
280 -- 282Sergii Ivakhno, Camilla Colombo, Stephen Tanner, Philip Tedder, Stefano Berri, Anthony J. Cox. tHapMix: simulating tumour samples through haplotype mixtures
283 -- 285Val F. Lanza, Fernando Baquero, Fernando de la Cruz, Teresa M. Coque. AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks
286 -- 288Jeongbin Park, Kayeong Lim, Jin-Soo Kim, Sangsu Bae. Cas-analyzer: an online tool for assessing genome editing results using NGS data
289 -- 291Vladimir Perovic, Neven Sumonja, Branislava Gemovic, Eneda Toska, Stefan G. Roberts, Nevena Veljkovic. TRI_tool: a web-tool for prediction of protein-protein interactions in human transcriptional regulation
292 -- 293Aaron M. Rosenfeld, Wenzhao Meng, Eline T. Luning Prak, Uri Hershberg. ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
294 -- 296Rasool Tahmasbi, Matthew C. Keller. GeneEvolve: a fast and memory efficient forward-time simulator of realistic whole-genome sequence and SNP data
297 -- 299Hasan Baig, Jan Madsen. D-VASim: an interactive virtual laboratory environment for the simulation and analysis of genetic circuits
300 -- 302Ruggero Ferrazza, Julian L. Griffin, Graziano Guella, Pietro Franceschi. IsotopicLabelling: an R package for the analysis of MS isotopic patterns of labelled analytes
303 -- 305Max Klein, Rati Sharma, Chris H. Bohrer, Cameron M. Avelis, Elijah Roberts. Biospark: scalable analysis of large numerical datasets from biological simulations and experiments using Hadoop and Spark
306 -- 308Matthew Norris, Chun Kit Kwok, Jitender Cheema, Matthew Hartley, Richard J. Morris, Sharon Aviran, Yiliang Ding. FoldAtlas: a repository for genome-wide RNA structure probing data
309 -- 0Andy L. Olivares, Miguel Ángel González Ballester, Jérôme Noailly. Virtual exploration of early stage atherosclerosis