Journal: Bioinformatics

Volume 35, Issue 10

1625 -- 1633Hadi Fanaee-T, Magne Thoresen. Multi-insight visualization of multi-omics data via ensemble dimension reduction and tensor factorization
1634 -- 1643Dina Svetlitsky, Tal Dagan, Vered Chalifa-Caspi, Michal Ziv-Ukelson. CSBFinder: discovery of colinear syntenic blocks across thousands of prokaryotic genomes
1644 -- 1652Can Yang, Xiang Wan, Xinyi Lin, Mengjie Chen, Xiang Zhou, Jin Liu. CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information
1653 -- 1659Hao Ding, Michael Sharpnack, Chao Wang, Kun Huang 0001, Raghu Machiraju. Integrative cancer patient stratification via subspace merging
1660 -- 1667Hailin Hu, An Xiao, Sai Zhang, Yangyang Li, Xuanling Shi, Tao Jiang, Linqi Zhang, Lei Zhang, Jianyang Zeng. DeepHINT: understanding HIV-1 integration via deep learning with attention
1668 -- 1676Anamaria Crisan, Jennifer L. Gardy, Tamara Munzner. A systematic method for surveying data visualizations and a resulting genomic epidemiology visualization typology: GEViT
1677 -- 1685Ki-Hok Liao, Wing-Kai Hon, Chuan Yi Tang, Wen-Ping Hsieh. MetaSMC: a coalescent-based shotgun sequence simulator for evolving microbial populations
1686 -- 1691Saisai Sun, Qi Wu, Zhenling Peng, Jianyi Yang. Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles
1692 -- 1700Gang Hu, Zhonghua Wu, Christopher J. Oldfield, Chen Wang, Lukasz A. Kurgan. Quality assessment for the putative intrinsic disorder in proteins
1701 -- 1711Divya Niveditha, Sudeshna Mukherjee, Syamantak Majumder, Rajdeep Chowdhury, Shibasish Chowdhury. A global transcriptomic pipeline decoding core network of genes involved in stages leading to acquisition of drug-resistance to cisplatin in osteosarcoma cells
1712 -- 1719Hui-Zeng Sun, Ke Zhao, Mi Zhou, Yanhong Chen, Le Luo Guan. Landscape of multi-tissue global gene expression reveals the regulatory signatures of feed efficiency in beef cattle
1720 -- 1728Louis Raynal, Jean-Michel Marin, Pierre Pudlo, Mathieu Ribatet, Christian P. Robert, Arnaud Estoup. ABC random forests for Bayesian parameter inference
1729 -- 1736Mingwei Dai, Xiang Wan, Hao Peng, Yao Wang, Yue Liu, Jin Liu, ZongBen Xu, Can Yang. Joint analysis of individual-level and summary-level GWAS data by leveraging pleiotropy
1737 -- 1744Da Chen Emily Koo, Richard Bonneau. Towards region-specific propagation of protein functions
1745 -- 1752Xuan Wang 0008, Yu Zhang 0044, Xiang Ren, Yuhao Zhang, Marinka Zitnik, Jingbo Shang, Curtis Langlotz, Jiawei Han 0001. Cross-type biomedical named entity recognition with deep multi-task learning
1753 -- 1759Shayoni Ray, Samrawit Gebre, Homer Fogle, Daniel C. Berrios, Peter B. Tran, Jonathan M. Galazka, Sylvain V. Costes. GeneLab: Omics database for spaceflight experiments
1760 -- 1762Weihua Pan, Stefano Lonardi. Accurate detection of chimeric contigs via Bionano optical maps
1763 -- 1765Pieter J. K. Libin, Koen Deforche, Ana B. Abecasis, Kristof Theys. VIRULIGN: fast codon-correct alignment and annotation of viral genomes
1766 -- 1767Tony E. Lewis, Ian Sillitoe, Jonathan G. Lees. cath-resolve-hits: a new tool that resolves domain matches suspiciously quickly
1768 -- 1770Yuk Yee Leung, Otto Valladares, Yi-Fan Chou, Han-Jen Lin, Amanda Kuzma, Laura Cantwell, Liming Qu, William J. Salerno, Gerard D. Schellenberg, Li-San Wang. VCPA: genomic variant calling pipeline and data management tool for Alzheimer's Disease Sequencing Project
1771 -- 1773Benoit Morel, Alexey M. Kozlov, Alexandros Stamatakis. ParGenes: a tool for massively parallel model selection and phylogenetic tree inference on thousands of genes
1774 -- 1776Wing Ki Wong, Guy Georges, Francesca Ros, Sebastian Kelm, Alan P. Lewis, Bruck Taddese, Jinwoo Leem, Charlotte M. Deane. SCALOP: sequence-based antibody canonical loop structure annotation
1777 -- 1779Zhe Wang, Xuwen Wang, Youyong Li, Tailong Lei, Ercheng Wang, Dan Li, Yu Kang, Feng Zhu, Tingjun Hou. farPPI: a webserver for accurate prediction of protein-ligand binding structures for small-molecule PPI inhibitors by MM/PB(GB)SA methods
1780 -- 1782Jason R. Phillips, Daniel L. Svoboda, Arpit Tandon, Shyam Patel, Alex Sedykh, Deepak Mav, Byron Kuo, Carole L. Yauk, Longlong Yang, Russell S. Thomas, Jeff S. Gift, J. Allen Davis, Louis Olszyk, B. Alex Merrick, Richard S. Paules, Fred Parham, Trey Saddler, Ruchir R. Shah, Scott S. Auerbach. BMDExpress 2: enhanced transcriptomic dose-response analysis workflow
1783 -- 1785Arthur T. O. Melo, Iago Hale. Expanded functionality, increased accuracy, and enhanced speed in the de novo genotyping-by-sequencing pipeline GBS-SNP-CROP
1786 -- 1788Chi Zhang, Shan-Shan Dong, Jun-Yang Xu, Wei-Ming He, Tie-Lin Yang. PopLDdecay: a fast and effective tool for linkage disequilibrium decay analysis based on variant call format files
1789 -- 1791Chongyang Tan, Wei Cui, Xinping Cui, Kang Ning. Strain-GeMS: optimized subspecies identification from microbiome data based on accurate variant modeling
1792 -- 1794Minzhe Zhang, Sangin Lee, Bo Yao, Guanghua Xiao, Lin Xu, Yang Xie. DIGREM: an integrated web-based platform for detecting effective multi-drug combinations
1795 -- 1796Yann Beauxis, Grégory Genta-Jouve. MetWork: a web server for natural products anticipation
1797 -- 1798Han Cao, Jiayu Zhou, Emanuel Schwarz. RMTL: an R library for multi-task learning
1799 -- 1801Axel J. Soto, Piotr Przybyla, Sophia Ananiadou. Thalia: semantic search engine for biomedical abstracts
1802 -- 1804Georges Hattab, Tim W. Nattkemper. SeeVis - 3D space-time cube rendering for visualization of microfluidics image data