| 2529 | -- | 2534 | Sarah N. Mapelli, Sara Napoli, Giuseppina Pisignano, Ramon Garcia-Escudero, Giuseppina M. Carbone, Carlo V. Catapano. Deciphering the complexity of human non-coding promoter-proximal transcriptome |
| 2535 | -- | 2544 | Dipan Shaw, Hao Chen, Tao Jiang. DeepIsoFun: a deep domain adaptation approach to predict isoform functions |
| 2545 | -- | 2554 | Joseph Mingrone, Edward Susko, Joseph P. Bielawski. ModL: exploring and restoring regularity when testing for positive selection |
| 2555 | -- | 2561 | Arthur Gilly, Lorraine Southam, Daniel Suveges, Karoline Kuchenbaecker, Rachel Moore, Giorgio E. M. Melloni, Konstantinos Hatzikotoulas, Aliki-Eleni Farmaki, Graham Ritchie, Jeremy Schwartzentruber, Petr Danecek, Britt Kilian, Martin O. Pollard, Xiangyu Ge, Emmanouil Tsafantakis, George Dedoussis, Eleftheria Zeggini. Very low-depth whole-genome sequencing in complex trait association studies |
| 2562 | -- | 2568 | Asher Moshe, Tal Pupko. Ancestral sequence reconstruction: accounting for structural information by averaging over replacement matrices |
| 2569 | -- | 2577 | Mattia Miotto, Pier Paolo Olimpieri, Lorenzo Di Rienzo, Francesco Ambrosetti, Pietro Corsi, Rosalba Lepore, Gian Gaetano Tartaglia, Edoardo Milanetti. Insights on protein thermal stability: a graph representation of molecular interactions |
| 2578 | -- | 2584 | Eduardo Mayol, Mercedes Campillo, Arnau Cordomí, Mireia Olivella. Inter-residue interactions in alpha-helical transmembrane proteins |
| 2585 | -- | 2592 | Claire Marks, Charlotte M. Deane. Increasing the accuracy of protein loop structure prediction with evolutionary constraints |
| 2593 | -- | 2601 | Ziwei Chen, Shaokun An, Xiangqi Bai, Fuzhou Gong, Liang Ma, Lin Wan. DensityPath: an algorithm to visualize and reconstruct cell state-transition path on density landscape for single-cell RNA sequencing data |
| 2602 | -- | 2609 | Jie Hao, Wei Cao, Jian Huang, Xin Zou, Ze-Guang Han. Optimal Gene Filtering for Single-Cell data (OGFSC) - a gene filtering algorithm for single-cell RNA-seq data |
| 2610 | -- | 2617 | Wenqiang Shi, Oriol Fornes, Wyeth W. Wasserman. Gene expression models based on transcription factor binding events confer insight into functional cis-regulatory variants |
| 2618 | -- | 2625 | Annika Röhl, Tanguy Riou, Alexander Bockmayr. Computing irreversible minimal cut sets in genome-scale metabolic networks via flux cone projection |
| 2626 | -- | 2633 | Rongting Huang, Yuanhua Huang, Yubin Guo, Shangwei Ji, Ming Lu, Tingting Li. Systematic characterization and prediction of post-translational modification cross-talk between proteins |
| 2634 | -- | 2643 | Meshari Alazmi, Hiroyuki Kuwahara, Othman Soufan, Lizhong Ding, Xin Gao 0001. Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions |
| 2644 | -- | 2653 | Topaz Gilad, José Reyes, Jia-Yun Chen, Galit Lahav, Tammy Riklin-Raviv. Fully unsupervised symmetry-based mitosis detection in time-lapse cell microscopy |
| 2654 | -- | 2656 | Guoli Ji, Wenbin Ye, Yaru Su, Moliang Chen, Guangzao Huang, Xiaohui Wu. AStrap: identification of alternative splicing from transcript sequences without a reference genome |
| 2657 | -- | 2659 | Sunyoung Shin, Rebecca Hudson, Christopher Harrison, Mark Craven, Sündüz Keles. atSNP Search: a web resource for statistically evaluating influence of human genetic variation on transcription factor binding |
| 2660 | -- | 2662 | Lucian P. Smith, Jon A Yamato, Mary K. Kuhner. CNValidator: validating somatic copy-number inference |
| 2663 | -- | 2664 | Carlos de Lannoy, Judith Risse, Dick de Ridder. poreTally: run and publish de novo nanopore assembler benchmarks |
| 2665 | -- | 2667 | Christopher M. Gibb, Robert Jackson, Sabah Mohammed, Jinan Fiaidhi, Ingeborg Zehbe. Pathogen-Host Analysis Tool (PHAT): an integrative platform to analyze next-generation sequencing data |
| 2668 | -- | 2670 | Swaine L. Chen. Implementation of a Stirling number estimator enables direct calculation of population genetics tests for large sequence datasets |
| 2671 | -- | 2673 | Josephine Burgin, Corentin Molitor, Fady R. Mohareb. MapOptics: a light-weight, cross-platform visualization tool for optical mapping alignment |
| 2674 | -- | 2676 | Shubham Chandak, Kedar Tatwawadi, Idoia Ochoa, Mikel Hernaez, Tsachy Weissman. SPRING: a next-generation compressor for FASTQ data |
| 2677 | -- | 2679 | Mirco Michel, David Menéndez Hurtado, Arne Elofsson. PconsC4: fast, accurate and hassle-free contact predictions |
| 2680 | -- | 2682 | Felipe Llinares-López, Laetitia Papaxanthos, Damian Roqueiro, Dean A. Bodenham, Karsten M. Borgwardt. CASMAP: detection of statistically significant combinations of SNPs in association mapping |
| 2683 | -- | 2685 | Ehsan Ullah, Michaël Aupetit, Arun Das, Abhishek Patil, Nooral Al Muftah, Reda Rawi, Mohamad Saad, Halima Bensmail. KinVis: a visualization tool to detect cryptic relatedness in genetic datasets |
| 2686 | -- | 2689 | Asa Thibodeau, Dong-Guk Shin. TriPOINT: a software tool to prioritize important genes in pathways and their non-coding regulators |
| 2690 | -- | 2691 | Céline Trébeau, Jacques Boutet de Monvel, Fabienne Wong Jun Tai, Christine Petit, Raphaël Etournay. DNABarcodeCompatibility: an R-package for optimizing DNA-barcode combinations in multiplex sequencing experiments |
| 2692 | -- | 2694 | Boris Vishnepolsky, Malak Pirtskhalava. Comment on: 'Empirical comparison of web-based antimicrobial peptide prediction tools' |
| 2695 | -- | 2696 | Musa Nur Gabere, William Stafford Noble. Response to comments on 'Empirical comparison of web-based antimicrobial peptide prediction tools' |
| 2697 | -- | 2698 | Raúl A González-Pech, Timothy G. Stephens, Cheong Xin Chan. Commonly misunderstood parameters of NCBI BLAST and important considerations for users |
| 2699 | -- | 2700 | Thomas L. Madden, Ben Busby, Jian Ye. Reply to the paper: Misunderstood parameters of NCBI BLAST impacts the correctness of bioinformatics workflows |
| 2701 | -- | 2705 | Stefano Nembrini. On what to permute in test-based approaches for variable importance measures in Random Forests |