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| 189 | -- | 199 | Malene Juul, Tobias Madsen, Qianyun Guo, Johanna Bertl, Asger Hobolth, Manolis Kellis, Jakob Skou Pedersen. ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation |
| 200 | -- | 210 | Bianca Dumitrascu, Gregory Darnell, Julien Ayroles, Barbara E. Engelhardt. Statistical tests for detecting variance effects in quantitative trait studies |
| 211 | -- | 218 | Chris-André Leimeister, Thomas Dencker, Burkhard Morgenstern. Accurate multiple alignment of distantly related genome sequences using filtered spaced word matches as anchor points |
| 219 | -- | 226 | Yunan Luo, Yun William Yu, Jianyang Zeng, Bonnie Berger, Jian Peng 0001. Metagenomic binning through low-density hashing |
| 227 | -- | 234 | Sebastian Deorowicz, Joanna Walczyszyn, Agnieszka Debudaj-Grabysz. CoMSA: compression of protein multiple sequence alignment files |
| 235 | -- | 242 | Yu-Chen Lo, Tianyun Liu, Kari M. Morrissey, Satoko Kakiuchi-Kiyota, Adam R. Johnson, Fabio Broccatelli, Yu Zhong, Amita Joshi, Russ B. Altman. Computational analysis of kinase inhibitor selectivity using structural knowledge |
| 243 | -- | 250 | Miha Skalic, Alejandro Varela-Rial, José Jiménez, Gerard Martínez-Rosell, Gianni De Fabritiis. LigVoxel: inpainting binding pockets using 3D-convolutional neural networks |
| 251 | -- | 257 | Jiaan Dai, Wei Jiang, Fengchao Yu, Weichuan Yu. Xolik: finding cross-linked peptides with maximum paired scores in linear time |
| 258 | -- | 265 | Emmanuel Curis, Cindie Courtin, Pierre Alexis Geoffroy, Jean-Louis Laplanche, Bruno Saubaméa, Cynthia Marie-Claire. Determination of sets of covariating gene expression using graph analysis on pairwise expression ratios |
| 266 | -- | 273 | Matthias P. Gerstl, Stefan Müller 0009, Georg Regensburger, Jürgen Zanghellini. Flux tope analysis: studying the coordination of reaction directions in metabolic networks |
| 274 | -- | 283 | Clément Frainay, Sandrine Aros, Maxime Chazalviel, Thomas Garcia, Florence Vinson, Nicolas Weiss, Benoit Colsch, Frédéric Sedel, Dominique Thabut, Christophe Junot, Fabien Jourdan. MetaboRank: network-based recommendation system to interpret and enrich metabolomics results |
| 284 | -- | 292 | Olivia Eriksson, Alexandra Jauhiainen, Sara Maad Sasane, Andrei Kramer, Anu G. Nair, Carolina Sartorius, Jeanette Hellgren Kotaleski. Uncertainty quantification, propagation and characterization by Bayesian analysis combined with global sensitivity analysis applied to dynamical intracellular pathway models |
| 293 | -- | 300 | Piotr Klukowski, Mario Schubert. Chemical shift-based identification of monosaccharide spin-systems with NMR spectroscopy to complement untargeted glycomics |
| 301 | -- | 308 | Etienne Becht, Yannick Simoni, Elaine Coustan-Smith, Maximilien Evrard, Yang Cheng, Lai Guan Ng, Dario Campana, Evan W. Newell. Reverse-engineering flow-cytometry gating strategies for phenotypic labelling and high-performance cell sorting |
| 309 | -- | 318 | Masashi Tsubaki, Kentaro Tomii, Jun Sese. Compound-protein interaction prediction with end-to-end learning of neural networks for graphs and sequences |
| 319 | -- | 328 | Renmin Han, Xiaohua Wan, Lun Li, Albert F. Lawrence, Peng Yang, Yu Li, Sheng Wang, Fei Sun, Zhiyong Liu, Xin Gao 0001, Fa Zhang. AuTom-dualx: a toolkit for fully automatic fiducial marker-based alignment of dual-axis tilt series with simultaneous reconstruction |
| 329 | -- | 331 | Pierre Simon Garcia, Frédéric Jauffrit, Christophe Grangeasse, Céline Brochier-Armanet. GeneSpy, a user-friendly and flexible genomic context visualizer |
| 332 | -- | 334 | David Jakubec, Jirí Vondrásek, Robert D. Finn. 3DPatch: fast 3D structure visualization with residue conservation |
| 335 | -- | 336 | Sebastian Uhrig, Holger Klein. PingPongPro: a tool for the detection of piRNA-mediated transposon-silencing in small RNA-Seq data |
| 337 | -- | 339 | James K. Bonfield, Shane A. McCarthy, Richard Durbin. Crumble: reference free lossy compression of sequence quality values |
| 340 | -- | 342 | Dana Wyman, Ali Mortazavi. TranscriptClean: variant-aware correction of indels, mismatches and splice junctions in long-read transcripts |
| 343 | -- | 345 | Sara B. Linker, Jonathan Y. Hsu, Adela Pfaff, Debha Amatya, Shu-Meng Ko, Sarah Voter, Quinn Wong, Fred H. Gage. BrainImageR: spatiotemporal gene set analysis referencing the human brain |
| 346 | -- | 348 | Soumita Ghosh, Abhik Datta, Kaisen Tan, Hyungwon Choi. SLIDE - a web-based tool for interactive visualization of large-scale - omics data |
| 349 | -- | 351 | David Damerell, Claire Strain-Damerell, Sefa Garsot, Stephen P. Joyce, Paul Barrett, Brian D. Marsden. SATurn: a modular bioinformatics framework for the design of robust maintainable web-based and standalone applications |
| 352 | -- | 360 | Hojjat Naderi-Meshkin, Xin Lai, Raheleh Amirkhah, Julio Vera, John E. J. Rasko, Ulf Schmitz. Exosomal lncRNAs and cancer: connecting the missing links |