| 4103 | -- | 4105 | Jiali Yang, Kun Lang, Guang-Le Zhang, Xiaodan Fan, Yuanyuan Chen, Cong Pian. SOMM4mC: a second-order Markov model for DNA N4-methylcytosine site prediction in six species |
| 4106 | -- | 4115 | Yi-Juan Hu, Glen A. Satten. Testing hypotheses about the microbiome using the linear decomposition model (LDM) |
| 4116 | -- | 4125 | Idit Bloch, Dana Sherill-Rofe, Doron Stupp, Irene Unterman, Hodaya Beer, Elad Sharon, Yuval Tabach. Optimization of co-evolution analysis through phylogenetic profiling reveals pathway-specific signals |
| 4126 | -- | 4129 | Dmitry Antipov, Mikhail Raiko, Alla Lapidus, Pavel A. Pevzner. Metaviral SPAdes: assembly of viruses from metagenomic data |
| 4130 | -- | 4136 | David J. Burks, Rajeev K. Azad. Higher-order Markov models for metagenomic sequence classification |
| 4137 | -- | 4143 | Hani Jieun Kim, Yingxin Lin, Thomas A. Geddes, Jean Yee Hwa Yang, Pengyi Yang. CiteFuse enables multi-modal analysis of CITE-seq data |
| 4144 | -- | 4153 | Jack LeBien, Gerald McCollam, Joel Atallah. An in silico model of LINE-1-mediated neoplastic evolution |
| 4154 | -- | 4162 | Meiyue Wang, Ruidong Li, Shizhong Xu. Deshrinking ridge regression for genome-wide association studies |
| 4163 | -- | 4170 | Francisco Guil, José F. Hidalgo, José M. García 0001. Boosting the extraction of elementary flux modes in genome-scale metabolic networks using the linear programming approach |
| 4171 | -- | 4179 | Caitlin M. A. Simopoulos, Zhibin Ning, Xu Zhang, Leyuan Li, Krystal Walker, Mathieu Lavallée-Adam, Daniel Figeys. pepFunk: a tool for peptide-centric functional analysis of metaproteomic human gut microbiome studies |
| 4180 | -- | 4188 | Lizhi Liu, Xiaodi Huang, Hiroshi Mamitsuka, Shanfeng Zhu. HPOLabeler: improving prediction of human protein-phenotype associations by learning to rank |
| 4189 | -- | 4190 | Yang Liu, Vinod Kumar Singh, Deyou Zheng. Stereo3D: using stereo images to enrich 3D visualization |
| 4191 | -- | 4192 | Vladimír Boza, Peter Peresíni, Brona Brejová, Tomás Vinar. DeepNano-blitz: a fast base caller for MinION nanopore sequencers |
| 4193 | -- | 4196 | Patrick F. McKenzie, Deren A. R. Eaton. ipcoal: an interactive Python package for simulating and analyzing genealogies and sequences on a species tree or network |
| 4197 | -- | 4199 | Yishu Wang, Arnaud Mary, Marie-France Sagot, Blerina Sinaimeri. Capybara: equivalence ClAss enumeration of coPhylogenY event-BAsed ReconciliAtions |
| 4200 | -- | 4202 | Douglas E. V. Pires, Wandré N. P. Veloso, Yoochan Myung, Carlos H. M. Rodrigues, Michael Silk, Pâmela M. Rezende, Francislon Silva, Joicymara S. Xavier, João P. L. Velloso, Carlos Henrique da Silveira, David B. Ascher. EasyVS: a user-friendly web-based tool for molecule library selection and structure-based virtual screening |
| 4203 | -- | 4205 | Eugenia Ulzurrun, Yorley Duarte, Esteban Pérez-Wohlfeil, Fernando D. González Nilo, Oswaldo Trelles. PLIDflow: an open-source workflow for the online analysis of protein-ligand docking using galaxy |
| 4206 | -- | 4207 | Joe G. Greener, Joel Selvaraj, Ben J. Ward. BioStructures.jl: read, write and manipulate macromolecular structures in Julia |
| 4208 | -- | 4210 | Damiano Cianferoni, Leandro G. Radusky, Sarah A. Head, Luis Serrano, Javier Delgado. ProteinFishing: a protein complex generator within the ModelX toolsuite |
| 4211 | -- | 4213 | Xiao Wang, Haidong Yi, Jia Wang, Zhandong Liu, Yanbin Yin, Han Zhang. GDASC: a GPU parallel-based web server for detecting hidden batch factors |
| 4214 | -- | 4216 | Mario Failli, Jussi Paananen, Vittorio Fortino. ThETA: transcriptome-driven efficacy estimates for gene-based TArget discovery |
| 4217 | -- | 4219 | Yan Zhang, Yaru Zhang, Jun Hu, Ji Zhang, Fangjie Guo, Meng Zhou, Guijun Zhang, Fulong Yu, Jianzhong Su. scTPA: a web tool for single-cell transcriptome analysis of pathway activation signatures |
| 4220 | -- | 4221 | Pieter Verschaffelt, Philippe Van Thienen, Tim Van Den Bossche, Felix Van der Jeugt, Caroline De Tender, Lennart Martens, Peter Dawyndt, Bart Mesuere. Unipept CLI 2.0: adding support for visualizations and functional annotations |
| 4222 | -- | 4224 | Zhong Wang, Nating Wang, Zilu Wang, Libo Jiang, Yaqun Wang, Jiahan Li, Rongling Wu, Janet Kelso. HiGwas: how to compute longitudinal GWAS data in population designs |
| 4225 | -- | 4226 | Ludovic Chaput, Valentin Guillaume, Natesh Singh, Benoit Deprez, Bruno O. Villoutreix. FastTargetPred: a program enabling the fast prediction of putative protein targets for input chemical databases |
| 4227 | -- | 4230 | Ataberk Donmez, Ahmet Süreyya Rifaioglu, Aybar C. Acar, Tunca Dogan, Rengül Çetin-Atalay, Volkan Atalay, Wren Jonathan. iBioProVis: interactive visualization and analysis of compound bioactivity space |
| 4231 | -- | 0 | Kohei Hagiwara, Liang Ding, Michael N. Edmonson, Stephen V. Rice, Scott Newman, John Easton, Juncheng Dai, Soheil Meshinchi, Rhonda E. Ries, Michael Rusch, Jinghui Zhang. RNAIndel: discovering somatic coding indels from tumor RNA-Seq data |