Journal: Bioinformatics

Volume 36, Issue 19

4827 -- 4832C. S. Casimiro-Soriguer, M. M. Rigual, A. M. Brokate-Llanos, M. J. Muñoz, A. Garzón, A. J. Pérez-Pulido, J. Jimenez. Using AnABlast for intergenic sORF prediction in the Caenorhabditis elegans genome
4833 -- 4837Dan Wang, Hui Tang, Jian-feng Liu, Shizhong Xu, Qin Zhang, Chao Ning. Rapid epistatic mixed-model association studies by controlling multiple polygenic effects
4838 -- 4845Yan Song, Haixu Tang, Haoyu Zhang, Qin Zhang. Overlap detection on long, error-prone sequencing reads via smooth q-gram
4846 -- 4853Yan Wang, Miguel Correa Marrero, Marnix H. Medema, Aalt D. J. van Dijk. Coevolution-based prediction of protein-protein interactions in polyketide biosynthetic assembly lines
4854 -- 4859Nico Borgsmüller, Jose Bonet, Francesco Marass, Abel Gonzalez-Perez, Núria López-Bigas, Niko Beerenwinkel. BnpC: Bayesian non-parametric clustering of single-cell mutation profiles
4860 -- 4868Kenong Su, Zhijin Wu, Hao Wu 0003. Simulation, power evaluation and sample size recommendation for single-cell RNA-seq
4869 -- 4875Ruhul Amin, Chowdhury Rafeed Rahman, Sajid Ahmed, Md. Habibur Rahman Sifat, Md Nazmul Khan Liton, Md. Moshiur Rahman, Md Zahid Hossain Khan, Swakkhar Shatabda. iPromoter-BnCNN: a novel branched CNN-based predictor for identifying and classifying sigma promoters
4876 -- 4884Khalique Newaz, Gabriel Wright, Jacob Piland, Jun Li 0052, Patricia L. Clark, Scott J. Emrich, Tijana Milenkovic. Network analysis of synonymous codon usage
4885 -- 4893Baoshan Ma, Mingkun Fang, Xiangtian Jiao. Inference of gene regulatory networks based on nonlinear ordinary differential equations
4894 -- 4901Yi Shi, Zehua Guo, Xianbin Su, Luming Meng, Mingxuan Zhang, Jing Sun, Chao Wu, Minhua Zheng, Xueyin Shang, Xin Zou, Wangqiu Cheng, Yaoliang Yu, Yujia Cai, Chaoyi Zhang, Weidong Cai 0001, Lin-tai Da, Guang He, Zeguang Han. DeepAntigen: a novel method for neoantigen prioritization via 3D genome and deep sparse learning
4902 -- 4909Peifeng Ruan, Shuang Wang, Hua Liang. mirPLS: a partial linear structure identifier method for cancer subtyping using microRNAs
4910 -- 4917Hai-Long Trieu, Thy Thy Tran, Anh-Khoa Duong Nguyen, Anh Nguyen, Makoto Miwa, Sophia Ananiadou. DeepEventMine: end-to-end neural nested event extraction from biomedical texts
4918 -- 4927Yahui Long, Min Wu 0008, Chee-Keong Kwoh 0001, Jiawei Luo, Xiaoli Li 0001. Predicting human microbe-drug associations via graph convolutional network with conditional random field
4928 -- 4934Hongxu Ding, Andrew D. Bailey, Miten Jain, Hugh Olsen, Benedict Paten. Gaussian mixture model-based unsupervised nucleotide modification number detection using nanopore-sequencing readouts
4935 -- 4941Yao Yao, Ihor Smal, Ilya Grigoriev, Anna Akhmanova, Erik Meijering. Deep-learning method for data association in particle tracking
4942 -- 4950Canhong Wen, Yuhui Yang, Quan Xiao, Meiyan Huang, Wenliang Pan. Genome-wide association studies of brain imaging data via weighted distance correlation
4951 -- 4954Lina Yang, Shuang Jiang, Bibo Jiang, Dajiang J. Liu, Xiaowei Zhan. Seqminer2: an efficient tool to query and retrieve genotypes for statistical genetics analyses from biobank scale sequence dataset
4955 -- 4956Lili Dong, Jianan Wang, Guohua Wang. BYASE: a Python library for estimating gene and isoform level allele-specific expression
4957 -- 4959David B. Blumenthal, Lorenzo Viola, Markus List, Jan Baumbach, Paolo Tieri, Tim Kacprowski. EpiGEN: an epistasis simulation pipeline
4960 -- 4962Lauren Marazzi, Andrew Gainer-Dewar, Paola Vera-Licona. OCSANA+: optimal control and simulation of signaling networks from network analysis
4963 -- 4964Mahiar Mahjoub, Daphne Ezer. PAFway: pairwise associations between functional annotations in biological networks and pathways
4965 -- 4967James Luke Gallant, Tiaan Heunis, Samantha Leigh Sampson, Wilbert Bitter. ProVision: a web-based platform for rapid analysis of proteomics data processed by MaxQuant
4968 -- 4969Zhicheng Zhang, Xiaokun Liang, Wenjian Qin, Shaode Yu, Yaoqin Xie. matFR: a MATLAB toolbox for feature ranking
4970 -- 4971Gonzalo Neira, Diego Cortez, Joaquin Jil, David S. Holmes. AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata
4972 -- 4974Janel L. Davis, Brian Soetikno, Ki-Hee Song, Yang Zhang, Cheng Sun, Hao F. Zhang. RainbowSTORM: an open-source ImageJ plug-in for spectroscopic single-molecule localization microscopy (sSMLM) data analysis and image reconstruction
4975 -- 0Irina Balaur, Ludovic Roy, Alexander Mazein, S. Gökberk Karaca, Ugur Dogrusoz, Emmanuel Barillot, Andrei Yu. Zinovyev. cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats