Journal: Bioinformatics

Volume 40, Issue 6

0 -- 0Xiaopeng Xu, Chencheng Xu, WenJia He, Lesong Wei, Haoyang Li, Juexiao Zhou, Ruochi Zhang, Yu Wang, Yuanpeng Xiong, Xin Gao 0001. de novo macrocyclic peptide design using generative pre-trained transformer
0 -- 0Jiangmei Xiong, Harsimran Kaur, Cody N. Heiser, Eliot T. McKinley, Joseph T. Roland, Robert J. Coffey, Martha J. Shrubsole, Julia Wrobel, Siyuan Ma, Ken S. Lau, Simon N. Vandekar. GammaGateR: semi-automated marker gating for single-cell multiplexed imaging
0 -- 0Jonathan Chacko, Hakan Özadam, Can Cenik. RiboGraph: an interactive visualization system for ribosome profiling data at read length resolution
0 -- 0Xiying Chen, Jinsha Huang, Tianqiao Shen, Houjin Zhang, Li Xu, Min Yang, Xiaoman Xie, Yunjun Yan, Jinyong Yan. DEAttentionDTA: protein-ligand binding affinity prediction based on dynamic embedding and self-attention
0 -- 0Yueyu Jiang, Daniel McDonald, Daniela Perry, Rob Knight 0001, Siavash Mirarab. Scaling DEPP phylogenetic placement to ultra-large reference trees: a tree-aware ensemble approach
0 -- 0Aditya K. Mishra, Iqbal Mahmud, Philip L. Lorenzi, Robert R. Jenq, Jennifer A Wargo, Nadim J. Ajami, Christine B. Peterson. TARO: tree-aggregated factor regression for microbiome data integration
0 -- 0Delaney K. Sullivan, Lior Pachter. splitcode
0 -- 0Xingjian Chen, Jiecong Lin, Yuchen Wang, Weitong Zhang, Weidun Xie, Zetian Zheng, Ka Chun Wong. HE2Gene: image-to-RNA translation via multi-task learning for spatial transcriptomics data