Journal: J. Biomedical Semantics

Volume 3, Issue S-3

0 -- 0Lana Yeganova, Won Kim, Donald C. Comeau, W. John Wilbur. ®
0 -- 0Rohit J. Kate. Unsupervised grammar induction of clinical report sublanguage
0 -- 0Sun Kim, W. John Wilbur. Thematic clustering of text documents using an EM-based approach
0 -- 0K. E. Ravikumar, Haibin Liu, Judith D. Cohn, Michael E. Wall, Karin Verspoor. Literature mining of protein-residue associations with graph rules learned through distant supervision
0 -- 0Rezarta Islamaj Dogan, Lana Yeganova. Topics in machine learning for biomedical literature analysis and text retrieval
0 -- 0Simon Clematide, Fabio Rinaldi. Ranking relations between diseases, drugs and genes for a curation task

Volume 3, Issue S-2

0 -- 0Johannes Röhl. Mechanisms in biomedical ontology
0 -- 0Georgios V. Gkoutos, Robert Hoehndorf. Ontology-based cross-species integration and analysis of Saccharomyces cerevisiae phenotypes
0 -- 0Niels Grewe. Continuation-like semantics for modeling structural process anomalies
0 -- 0Filipe Santana, Fred Freitas, Roberta Fernandes, Zulma Medeiros, Daniel Schober. Towards an ontological representation of morbidity and mortality in Description Logics
0 -- 0Anika Oellrich, Georgios V. Gkoutos, Robert Hoehndorf, Dietrich Rebholz-Schuhmann. Quantitative comparison of mapping methods between Human and Mammalian Phenotype Ontology
0 -- 0Aleksandra Sojic, Oliver Kutz. Open biomedical pluralism: formalising knowledge about breast cancer phenotypes
0 -- 0Djamila Seddig-Raufie, Ludger Jansen, Daniel Schober, Martin Boeker, Niels Grewe, Stefan Schulz. Proposed actions are no actions: re-modeling an ontology design pattern with a realist top-level ontology
0 -- 0Frank Loebe, Frank Stumpf, Robert Hoehndorf, Heinrich Herre. Towards improving phenotype representation in OWL
0 -- 0Daniel Schober, Ilinca Tudose, Vojtech Svátek, Martin Boeker. OntoCheck: verifying ontology naming conventions and metadata completeness in Protégé 4

Volume 3, Issue S-1

0 -- 0Elena Beisswanger, Udo Hahn. Towards valid and reusable reference alignments - ten basic quality checks for ontology alignments and their application to three different reference data sets
0 -- 0George Tsatsaronis, Natalia Macari, Sunna Torge, Heiko Dietze, Michael Schroeder. A Maximum-Entropy approach for accurate document annotation in the biomedical domain
0 -- 0Paea LePendu, Srinivasan Iyer, Cédrick Fairon, Nigam H. Shah. Annotation Analysis for Testing Drug Safety Signals using Unstructured Clinical Notes
0 -- 0Simon Jupp, Robert Stevens, Robert Hoehndorf. Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
0 -- 0Paolo Ciccarese, Marco Ocana, Tim Clark. Open semantic annotation of scientific publications using DOMEO
0 -- 0Benjamin M. Good, Erik L. Clarke, Salvatore Loguercio, Andrew I. Su. Linking genes to diseases with a SNPedia-Gene Wiki mashup
0 -- 0Larisa N. Soldatova, Susanna-Assunta Sansone, Michel Dumontier, Nigam H. Shah. Selected papers from the 14th Annual Bio-Ontologies Special Interest Group Meeting
0 -- 0Olga Tcheremenskaia, Romualdo Benigni, Ivelina Nikolova, Nina Jeliazkova, Sylvia Escher, Monika Batke, Thomas Baier 0005, Vladimir Poroikov, Alexey Lagunin, Micha Rautenberg, Barry J. Hardy. OpenTox predictive toxicology framework: toxicological ontology and semantic media wiki-based OpenToxipedia