Journal: Computer Physics Communications

Volume 180, Issue 9

1429 -- 1433Songxin Liang, David J. Jeffrey. New travelling wave solutions to modified CH and DP equations
1434 -- 1441Carlos E. Fiore, Mário J. de Oliveira. Extending the use of canonical and microcanonical Monte Carlo algorithms to spin models
1442 -- 1447Luca Argenti, Renato Colle. On the B-splines effective completeness
1448 -- 1457Tatiana V. Levitina, Erkki J. Brändas. Filter diagonalization: Filtering and postprocessing with prolates
1458 -- 1466Mehdi Dehghan, Davoud Mirzaei. Meshless local boundary integral equation (LBIE) method for the unsteady magnetohydrodynamic (MHD) flow in rectangular and circular pipes
1467 -- 1480B. D. Dudson, M. V. Umansky, X. Q. Xu, P. B. Snyder, H. R. Wilson. BOUT++: A framework for parallel plasma fluid simulations
1481 -- 1488Huanmin Yao. Solution of the Duffing equation involving both integral and non-integral forcing terms
1495 -- 1502Massimo Bernaschi, Simone Melchionna, Sauro Succi, Maria Fyta, Efthimios Kaxiras, Joy K. Sircar. MUPHY: A parallel MUlti PHYsics/scale code for high performance bio-fluidic simulations
1503 -- 1510James E. Magee, Helen Dutton, Flor R. Siperstein. CaSPA - an algorithm for calculation of the size of percolating aggregates
1511 -- 1515Hua Yang, Yuchao Nie, Hongbin Zhang, Zengru Di, Ying Fan. Insight to the express transport network
1516 -- 1523Alper Korkmaz, Idris Dag. Solitary wave simulations of Complex Modified Korteweg-de Vries Equation using differential quadrature method
1524 -- 1533W. A. Cooper, S. P. Hirshman, P. Merkel, J. P. Graves, J. Kisslinger, H. F. G. Wobig, Y. Narushima, S. Okamura, K. Y. Watanabe. Three-dimensional anisotropic pressure free boundary equilibria
1534 -- 1538Nobuaki Ohno, Akira Kageyama. Visualization of spherical data by Yin-Yang grid
1539 -- 1544M. M. Rashidi, E. Erfani. New analytical method for solving Burgers and nonlinear heat transfer equations and comparison with HAM
1545 -- 1549Xinyuan Wu, Xiong You, Jiyong Li. Note on derivation of order conditions for ARKN methods for perturbed oscillators
1550 -- 1557Manabu Yagi, Kanako Seki, Yosuke Matsumoto. Development of a magnetohydrodynamic simulation code satisfying the solenoidal magnetic field condition
1558 -- 1565Michael Weyrauch, Daniel Scholz. Computing the Baker-Campbell-Hausdorff series and the Zassenhaus product
1566 -- 1571Qingjie Zhao, Baojun Zhang, Huosheng Hu. Novel two-step filtering scheme for a logging-while-drilling system
1572 -- 1578G. Alvarez. The density matrix renormalization group for strongly correlated electron systems: A generic implementation
1579 -- 1613F. Mahmoudi. SuperIso v2.3: A program for calculating flavor physics observables in supersymmetry
1614 -- 1641Neil D. Christensen, Claude Duhr. FeynRules - Feynman rules made easy
1642 -- 1653Boris Tomásik. DRAGON: Monte Carlo generator of particle production from a fragmented fireball in ultrarelativistic nuclear collisions
1654 -- 1660Rafael López, Jaime Fernández Rico, Guillermo Ramírez, Ignacio Ema, David Zorrilla. DAMQT: A package for the analysis of electron density in molecules
1661 -- 1670K. Arnold, M. Bähr, G. Bozzi, F. Campanario, C. Englert, T. Figy, N. Greiner, C. Hackstein, V. Hankele, B. Jäger, G. Klämke, M. Kubocz, C. Oleari, S. Plätzer, S. Prestel, M. Worek, D. Zeppenfeld. Vbfnlo: A parton level Monte Carlo for processes with electroweak bosons
1671 -- 1680Karol Kolodziej. carlomat: A program for automatic computation of lowest order cross sections
1681 -- 1693T. Hahn. SUSY Les Houches Accord 2 I/O made easy
1700 -- 1708S. A. Chin, S. Janecek, E. Krotscheck. An arbitrary order diffusion algorithm for solving Schrödinger equations
1709 -- 1715D. Binosi, J. Collins, C. Kaufhold, L. Theußl. JaxoDraw: A graphical user interface for drawing Feynman diagrams. Version 2.0 release notes
1716 -- 1717Sam J. Cipolla. ISICS2008: An expanded version of ISICS for calculating K-, L-, and M-shell cross sections from PWBA and ECPSSR theory
1718 -- 1719F. Mahmoudi. SuperIso v3.0, flavor physics observables calculations: extension to NMSSM

Volume 180, Issue 8

1221 -- 1229Tirath Ramdas, Gregory K. Egan, David Abramson, Kim Baldridge. ERI sorting for emerging processor architectures
1230 -- 1241M. M. Becker, D. Loffhagen, W. Schmidt. A stabilized finite element method for modeling of gas discharges
1242 -- 1250Otmar Ertl, Siegfried Selberherr. A fast level set framework for large three-dimensional topography simulations
1251 -- 1258Yongzhi Chen, Yuefan Deng. A detailed analysis of communication load balance on BlueGene supercomputer
1259 -- 1270Jee-Gong Chang, Yu-Bin Fang, Shin-Pon Ju. Using a generalized molecular dynamics force model for random microstructure generation of different aspect-ratios and orientation for use in the optical design of an LED edge-lit backlight
1277 -- 1281X. Ferrieres, G. Klysz, P. Mazet, J. P. Balayssac. Evaluation of the concrete electromagnetics properties by using radar measurements in a context of building sustainability
1282 -- 1304Nobuyuki Aiba, Shinji Tokuda, M. Furukawa, P. B. Snyder, M. S. Chu. MINERVA: Ideal MHD stability code for toroidally rotating tokamak plasmas
1305 -- 1314Hong-Yu Wang, Wei Jiang, You-Nian Wang. Parallelization and optimization of electrostatic Particle-in-Cell/Monte-Carlo Coupled codes as applied to RF discharges
1315 -- 1337Dhiranjan Roy. Global approximation for some functions
1338 -- 1357Stephan Dürr. Logarithmic link smearing for full QCD
1358 -- 1375Ochbadrakh Chuluunbaatar, A. A. Gusev, Sergey I. Vinitsky, A. G. Abrashkevich. ODPEVP: A program for computing eigenvalues and eigenfunctions and their first derivatives with respect to the parameter of the parametric self-adjoined Sturm-Liouville problem
1376 -- 1381Rajan K. Chakrabarty, Mark A. Garro, Shammah Chancellor, Christopher Herald, Hans Moosmüller. FracMAP: A user-interactive package for performing simulation and orientation-specific morphology analysis of fractal-like solid nano-agglomerates
1382 -- 1391Chuanfu Luo, Jens-Uwe Sommer. Coding coarse grained polymer model for LAMMPS and its application to polymer crystallization
1392 -- 1403Andrea Marini, Conor Hogan, Myrta Grüning, Daniele Varsano. yambo: An ab initio tool for excited state calculations
1404 -- 1415Constantinos Voglis, Panagiotis E. Hadjidoukas, Isaac E. Lagaris, D. G. Papageorgiou. A numerical differentiation library exploiting parallel architectures
1416 -- 1425Layla Martin-Samos, Giovanni Bussi. SaX: An open source package for electronic-structure and optical-properties calculations in the GW approximation
1426 -- 1427Thomas Hahn, Sven Heinemeyer, Wolfgang Hollik, Heidi Rzehak, Georg Weiglein. FeynHiggs: A program for the calculation of MSSM Higgs-boson observables - Version 2.6.5

Volume 180, Issue 7

1013 -- 1040W. Younes. Gaussian matrix elements in a cylindrical harmonic oscillator basis
1041 -- 1053N. D. M. Hine, P. D. Haynes, Arash A. Mostofi, C.-K. Skylaris, M. C. Payne. Linear-scaling density-functional theory with tens of thousands of atoms: Expanding the scope and scale of calculations with ONETEP
1054 -- 1062Jianying Zhang, Guangwu Yan. A lattice Boltzmann model for the Korteweg-de Vries equation with two conservation laws
1063 -- 1071Jian Wang. Multisymplectic numerical method for the Zakharov system
1072 -- 1085T. E. Simos. P-stability, Trigonometric-fitting and the numerical solution of the radial Schrödinger equation
1086 -- 1097Franck Assous, Felix Tsipis. Numerical paraxial approximation for highly relativistic beams
1098 -- 1103G. A. Nemnes, K. H. Hoffmann. Spin-box algorithm for low temperature dynamics of short range disordered Ising spin systems
1104 -- 1108Zhen Wang. Discrete tanh method for nonlinear difference-differential equations
1109 -- 1115Elisa Stevanato, Roberto Stroili. A case study for the handling of data in a skimming control system
1116 -- 1124Om P. Singh, Rajesh K. Pandey, Vineet K. Singh. An analytic algorithm of Lane-Emden type equations arising in astrophysics using modified Homotopy analysis method
1125 -- 1133Miguel A. García-March, Miguel Arevalillo-Herráez, Francisco R. Villatoro, Fernando Giménez, Pedro Fernández de Córdoba. A generalized finite difference method using Coatmèlec lattices
1134 -- 1136José M. Soler, Eduardo Anglada. Optimal Fourier filtering of a function that is strictly confined within a sphere
1137 -- 1144Gui-qiong Xu. A note on the Painlevé test for nonlinear variable-coefficient PDEs
1145 -- 1149Kensuke Yokoi. A variational approach to multi-phase motion of gas, liquid and solid based on the level set method
1150 -- 1163M. A. Caprio, D. J. Rowe, T. A. Welsh. Construction of SO(5) SUPERSET OF SO(3) spherical harmonics and Clebsch-Gordan coefficients
1164 -- 1182S. Vanaverbeke, Rony Keppens, Stefaan Poedts, H. Boffin. GRADSPH: A parallel smoothed particle hydrodynamics code for self-gravitating astrophysical fluid dynamics
1183 -- 1187María Eugenia Castro, Alfonso Niño, Camelia Muñoz-Caro. Gmat. A software tool for the computation of the rovibrational G matrix
1188 -- 1195Kei Moritsugu, Jeremy C. Smith. REACH: A program for coarse-grained biomolecular simulation
1196 -- 1205Min Gao, Masaaki Ito. A Maple package for verifying ultradiscrete soliton solutions
1206 -- 1218Olga Shekhovtsova, Graziano Venanzoni, Giulia Pancheri. -->pipigamma at DAPhiNE
1219 -- 1220Andrzej Daniluk. Multithreaded transactions in scientific computing. The Growth06_v2 program

Volume 180, Issue 6

813 -- 818Michele Della Morte, Leonardo Giusti. Exploiting symmetries for exponential error reduction in path integral Monte Carlo
819 -- 826Michele Della Morte, Leonardo Giusti. Symmetries and exponential error reduction in Yang-Mills theories on the lattice
827 -- 834Sumie Yamamoto, Keisuke Fujii, Akiya Miyamoto. A handy tool for history keeping of Geant4 tracks - J4HistoryKeeper
835 -- 841L. Welser-Sherrill, J. H. Cooley, D. C. Wilson. Interactive tools designed to study mix in inertial confinement fusion implosions
842 -- 849Zhongcheng Wang, Hezhu Shao. A new kind of discretization scheme for solving a two-dimensional time-independent Schrödinger equation
850 -- 853C. Timbó, L. A. R. da Rosa, M. Gonçalves, S. B. Duarte. Computational cancer cells identification by fractal dimension analysis
854 -- 860Rong Zeng, Yanzhi Zhang. Efficiently computing vortex lattices in rapid rotating Bose-Einstein condensates
861 -- 872Diego Molteni, Andrea Colagrossi. A simple procedure to improve the pressure evaluation in hydrodynamic context using the SPH
873 -- 878Mehdi Dehghan, Narges Rastegar. On the global behavior of a high-order rational difference equation
879 -- 886Charlotte Froese Fischer, Oleg Zatsarinny. A B-spline Galerkin method for the Dirac equation
887 -- 903M. V. Umansky, X. Q. Xu, B. Dudson, L. L. LoDestro, J. R. Myra. Status and verification of edge plasma turbulence code BOUT
904 -- 911Kui Fu Chen, Jing Tao Jiang, Stephen Crowsen. Against the long-range spectral leakage of the cosine window family
912 -- 919Adrian Alexandrescu, Alfonso Bueno-Orovio, José R. Salgueiro, Víctor M. Pérez-García. Mapped Chebyshev pseudospectral method for the study of multiple scale phenomena
920 -- 925Janis Timoshenko, Alexei Kuzmin. Wavelet data analysis of EXAFS spectra
926 -- 947S.-L. Chang, C.-S. Chien. Computing multiple peak solutions for Bose-Einstein condensates in optical lattices
948 -- 964Frank Tabakin, Bruno Juliá-Díaz. QCMPI: A parallel environment for quantum computing
965 -- 976R. Alkofer, M. Q. Huber, K. Schwenzer. Algorithmic derivation of Dyson-Schwinger equations
977 -- 994R. Ramis, J. Meyer-ter-Vehn, J. Ramírez. MULTI2D - a computer code for two-dimensional radiation hydrodynamics
995 -- 1003Vladimir Horvat. ERCS08: A FORTRAN program equipped with a Windows graphics user interface that calculates ECPSSR cross sections for the removal of atomic electrons
1004 -- 1010Ling Ti Kong, Guido Bartels, Carlos Campañá, Colin Denniston, Martin H. Müser. Implementation of Green s function molecular dynamics: An extension to LAMMPS
1011 -- 0Ochbadrakh Chuluunbaatar, A. A. Gusev, Vladimir P. Gerdt, V. A. Rostovtsev, Sergey I. Vinitsky, A. G. Abrashkevich, Michail S. Kaschiev, V. V. Serov. Erratum to: Program AEAA_v1_0, POTHMF: A program for computing potential curves and matrix elements of the coupled adiabatic radial equations for a hydrogen-like atom in a homogeneous magnetic field [Computer Physics Communications 178 (2008) 301]
1012 -- 0Ochbadrakh Chuluunbaatar, A. A. Gusev, Sergey I. Vinitsky, A. G. Abrashkevich. Erratum to: Program ADZH_v2_0, KANTBP 2.0: New version of a program for computing energy levels, reaction matrix and radial wave functions in the coupled-channel hyperspherical adiabatic approach [Computer Physics Communications 179 (2008) 685]

Volume 180, Issue 5

669 -- 674Tao Wei, Shengjing Mu, Aiichiro Nakano, Katherine Shing. A hybrid multi-loop genetic-algorithm/simplex/spatial-grid method for locating the optimum orientation of an adsorbed protein on a solid surface
675 -- 698S. Jadach, W. Placzek, M. Skrzypek, P. Stephens, Z. Was. Constrained MC for QCD evolution with rapidity ordering and minimum kT
699 -- 707Shyamal Bhar, Soumen Kumar Roy. Computer simulation of two continuous spin models using Wang-Landau-Transition-Matrix Monte Carlo algorithm
708 -- 711A. S. V. Ravi Kanth, K. Aruna. Differential transform method for solving the linear and nonlinear Klein-Gordon equation
712 -- 723Jacinto Javier Ibáñez, Vicente Hernández, Enrique Arias, P. A. Ruiz. Solving Initial Value Problems for Ordinary Differential Equations by two approaches: BDF and piecewise-linearized methods
724 -- 734Sridhar Sahu, Alok Shukla. Fortran 90 implementation of the Hartree-Fock approach within the CNDO/2 and INDO models
735 -- 746A. V. Smirnov, M. N. Tentyukov. Feynman Integral Evaluation by a Sector decomposiTion Approach (FIESTA)
747 -- 767G. Bélanger, F. Boudjema, A. Pukhov, A. Semenov. Dark matter direct detection rate in a generic model with micrOMEGAs_2.2
779 -- 799I. P. Lokhtin, L. V. Malinina, S. V. Petrushanko, A. M. Snigirev, I. Arsene, K. Tywoniuk. Heavy ion event generator HYDJET++ (HYDrodynamics plus JETs)
800 -- 812A. Otero-de-la-Roza, Víctor Luaña. Runwien: a text-based interface for the WIEN package

Volume 180, Issue 4

0 -- 0J. A. Plascak, A. T. Bernardes. CCP2008 - Modeling a better world
475 -- 479T. Wüst, D. P. Landau, C. Gervais, Y. Xu. Monte Carlo simulations of systems with complex energy landscapes
480 -- 484Mário J. de Oliveira. Glassy states in the stochastic Potts model
485 -- 487Shan-Ho Tsai, D. P. Landau. Phase diagram of a two-dimensional large-Q Potts model in an external field
488 -- 492Ernesto S. Loscar, Ezequiel V. Albano. Hysteretic effects in the first-order irreversible phase transition of the ZGB model
493 -- 496B. Berche, P. Butera, W. Janke, L. Shchur. Universal ratios of critical amplitudes in the Potts model universality class
497 -- 502Marco G. Mazza, Kevin Stokely, Elena G. Strekalova, H. Eugene Stanley, Giancarlo Franzese. Cluster Monte Carlo and numerical mean field analysis for the water liquid-liquid phase transition
503 -- 508L. Nduwayo, R. Lindebaum, Nithaya Chetty. Suppressed bond-site percolation
509 -- 511T. E. Booth, J. E. Gubernatis. Sewing algorithm
512 -- 516T. Tallinen, J. A. Åström, J. Timonen. Discrete element simulations of crumpling of thin sheets
517 -- 522J. M. Kumpula, Jukka-Pekka Onnela, Jari Saramäki, J. Kertész, Kimmo Kaski. Model of community emergence in weighted social networks
523 -- 526Mary Luz Mouronte, R. M. Benito, J. P. Cárdenas, A. Santiago, Vicente Feliú Batlle, P. van Wijngaarden, Luis Gregorio Moyano. Complexity in Spanish optical fiber and SDH transport networks
527 -- 531Gabriel Baglietto, Ezequiel V. Albano. Computer simulations of the collective displacement of self-propelled agents
532 -- 535Enrique Burgos, Horacio Ceva, Laura Hernández, R. P. J. Perazzo. Understanding and characterizing nestedness in mutualistic bipartite networks
536 -- 539Tânia Tomé, Áttila L. Rodrigues, Everaldo Arashiro, Mário J. de Oliveira. The stochastic nature of predator-prey cycles
540 -- 544Marcos Rigol, Rajiv R. P. Singh. Thermodynamic properties of quantum lattice models from numerical linked cluster expansions
545 -- 548P. Klosiewicz, J. Broeckhove, W. Vanroose. Using pseudo-arclength continuation to trace the resonances of the Schrödinger equation
549 -- 554Myoung Won Cho, Sul-Ah Ahn. Efficient and exact computation of Hubbard and t-J models using quantum diagonalization method
555 -- 558Norbert Attig. Computational physics with PetaFlops computers
559 -- 563Jamie Shiers. Grid today, clouds on the horizon
564 -- 573G. Krein, J. M. Machado, A. O. Pereira. Dynamics of the deconfinement transition of quarks and gluons in a finite volume
574 -- 579R. L. S. Farias, Rudnei O. Ramos, L. A. da Silva. Numerical solutions for non-Markovian stochastic equations of motion
580 -- 582Joan Adler, Polina Pine. Visualization techniques for modelling carbon allotropes
583 -- 586A. G. Cunha-Netto, Ronald Dickman, A. A. Caparica. Two-dimensional lattice polymers: Adaptive windows simulations
587 -- 589D. T. Seaton, T. Wüst, D. P. Landau. A Wang-Landau study of the phase transitions in a flexible homopolymer
590 -- 593Cláudio José DaSilva, A. G. Cunha-Netto, Ronald Dickman, A. A. Caparica. Constructing ground state configurations of lattice polymers
594 -- 599A. G. Bailey, C. P. Lowe, A. P. Sutton. REVLD: A coarse-grained model for polymers
600 -- 604M. Müller, C. Pastorino, J. Servantie. Hydrodynamic boundary condition of polymer melts at simple and complex surfaces
605 -- 608Burkhard Dünweg, Ulf D. Schiller, Anthony J. C. Ladd. Progress in the understanding of the fluctuating lattice Boltzmann equation
609 -- 611Eric J. R. Parteli, Murilo P. Almeida, Orencio Durán, José S. Andrade Jr., Hans J. Herrmann. Sand transport on Mars
612 -- 615A. P. F. Atman, P. Claudin, G. Combe. Departure from elasticity in granular layers: Investigation of a crossover overload force
616 -- 620W. F. Oquendo, J. D. Muñoz, A. Lizcano. Oedometric test, Bauer s law and the micro-macro connection for a dry sand
621 -- 624Reinaldo R. Rosa, Fernando M. Ramos, Cesar A. Caretta, Haroldo F. de Campos Velho. Extreme event dynamics in the formation of galaxy-sized dark matter structures
625 -- 627Naoki Yoshida. Supercomputer simulations of structure formation in the Universe
628 -- 635Sang Ki Nam, John P. Verboncoeur. Global model for high power microwave breakdown at high pressure in air
636 -- 641Seung Min Lee, Yong Jun Hong, Young Sik Seo, Felipe Iza, Gyoo Cheon Kim, Jae Koo Lee. Simulations of biomedical atmospheric-pressure discharges
642 -- 650T. Kroetz, F. A. Marcus, M. Roberto, Iberê L. Caldas, Ricardo L. Viana, E. C. da Silva. Transport control in fusion plasmas by changing electric and magnetic field spatial profiles
651 -- 655Min Sup Hur, Jonathan S. Wurtele. Two-dimensional simulations of the amplification and focusing of intense laser pulses in the kinetic regime of Raman backward amplification in plasmas
656 -- 658Y. C. Chuang, J. Y. Hsu. Particle-in-cell study of microwave confined plasma
659 -- 663J. Y. Lin, Y.-H. Tang, M.-H. Tsai. Electronic structures of the Si(001) thin film under (110)- and (010)-direction uniaxial tensile strains
664 -- 668Fortunato Silva de Menezes, Davi Geiger, Ricardo Martins Abreu e Silva, George Distler, Arefin Hu. Forward-backward study of the stereo vision problem

Volume 180, Issue 3

339 -- 346V. A. Kudryavtsev. Muon simulation codes MUSIC and MUSUN for underground physics
347 -- 359Christoph Friedrich, Arno Schindlmayr, Stefan Blügel. Efficient calculation of the Coulomb matrix and its expansion around k=0 within the FLAPW method
360 -- 364Pedro Gonnet, Jens H. Walther, Petros Koumoutsakos. theta-SHAKE: An extension to SHAKE for the explicit treatment of angular constraints
365 -- 374Takayuki Umeda, Kentaro Togano, Tatsuki Ogino. Two-dimensional full-electromagnetic Vlasov code with conservative scheme and its application to magnetic reconnection
375 -- 383Chia-Chien Huang. Semiconductor nanodevice simulation by multidomain spectral method with Chebyshev, prolate spheroidal and Laguerre basis functions
384 -- 391Simone Orlandini, Isabella Baccarelli, Francesco A. Gianturco. Variational calculations of structures and energetics in very floppy trimers: A new computational implementation
401 -- 417Alessandro Ballestrero, Aissa Belhouari, Giuseppe Bevilacqua, Vladimir Kashkan, Ezio Maina. PHANTOM: A Monte Carlo event generator for six parton final states at high energy colliders
418 -- 426J. Brandon Keith, Jacob R. Fennick, Chad E. Junkermeier, Daniel R. Nelson, James P. Lewis. A web-deployed interface for performing ab initio molecular dynamics, optimization, and electronic structure in Fireball
427 -- 430Michele Caffo, Henryk Czyz, Michal Gunia, Ettore Remiddi. BOKASUN: A fast and precise numerical program to calculate the Master Integrals of the two-loop sunrise diagrams
455 -- 458F. Reinhard, Oliver F. Lange, Jochen S. Hub, Jürgen Haas, Helmut Grubmüller. g_permute: Permutation-reduced phase space density compaction
459 -- 465Dimitris Skouteris, Osvaldo Gervasi, Antonio Laganà. A program for performing exact quantum dynamics calculations using cylindrical polar coordinates: A nanotube application
466 -- 473Zhe Yuan, Shiwu Gao. Linear response approach to collective electronic excitations of solids and surfaces
474 -- 0Bruno Juliá-Díaz, Joseph M. Burdis, Frank Tabakin. QDENSITY - A Mathematica quantum computer simulation

Volume 180, Issue 2

167 -- 176Z. Kalogiratou, Th. Monovasilis, Tom E. Simos. Computation of the eigenvalues of the Schrödinger equation by exponentially-fitted Runge-Kutta-Nyström methods
177 -- 179J. G. Jiang, Y.-N. Huang. Simulation of distribution of random walks on a lattice
180 -- 191Nigel Cundy. Low-lying Wilson Dirac operator eigenvector mixing in dynamical overlap hybrid Monte Carlo
192 -- 196Guang-hui Cheng, Ting-Zhu Huang, Shu-Qian Shen. Block triangular preconditioners for the discretized time-harmonic Maxwell equations in mixed form
201 -- 208Nigel Cundy, Stefan Krieg, Thomas Lippert, Andreas Schäfer. Topological tunnelling with dynamical overlap fermions
209 -- 214Y. Duan, P. F. Tang, T. Z. Huang, S. J. Lai. Coupling projection domain decomposition method and Kansa s method in electrostatic problems
215 -- 225Attilio Cucchieri, Axel Maas, Tereza Mendes. Linear covariant gauges on the lattice
226 -- 230D. Portes Jr., H. Rodrigues, B. Baseia, S. B. Duarte. Computational procedure to determine quantum state evolution in Fock space
231 -- 237Byoungseon Jeon, Niels Grønbech-Jensen. Efficient parallel algorithm for statistical ion track simulations in crystalline materials
238 -- 240Armen H. Poghosyan, Aram A. Shahinyan. A new parameter for validation molecular dynamics simulation (MD) data
241 -- 250Veerle Ledoux, Marnix Van Daele, Guido Vanden Berghe. Efficient computation of high index Sturm-Liouville eigenvalues for problems in physics
251 -- 255Panagiotis Vlachos, Ioannis Karafyllidis. Simulation of quantum key expansion using quantum cellular automata
256 -- 268Khatuna Kakhiani, Kakha Tsereteli, Paata Tsereteli. A program to generate a basis set adaptive radial quadrature grid for density functional theory
269 -- 275A. Nappi. A pitfall in the use of extended likelihood for fitting fractions of pure samples in a mixed sample
276 -- 301M. Souaille, H. Loirat, D. Borgis, Marie-Pierre Gaigeot. MDVRY: a polarizable classical molecular dynamics package for biomolecules
302 -- 311D. Engel, M. Klews, G. Wunner. A fast parallel code for calculating energies and oscillator strengths of many-electron atoms at neutron star magnetic field strengths in adiabatic approximation
312 -- 331J. S. Lee, M. Carena, J. Ellis, A. Pilaftsis, C. E. M. Wagner. CPsuperH2.0: An improved computational tool for Higgs phenomenology in the MSSM with explicit CP violation
332 -- 338J. D. Talman. NumSBT: A subroutine for calculating spherical Bessel transforms numerically

Volume 180, Issue 12

0 -- 0N. Stanley Scott. Foreword
0 -- 0Phil G. Burke, Val Burke. Establishment of CPC and the Program Library
2401 -- 2409Xiaoxu Guan, C. J. Noble, O. Zatsarinny, K. Bartschat, B. I. Schneider. ALTDSE: An Arnoldi-Lanczos program to solve the time-dependent Schrödinger equation
2410 -- 2423M. Plummer, E. A. G. Armour, A. C. Todd, C. P. Franklin, J. N. Cooper. tripleint_cc : A program for 2-centre variational leptonic Coulomb potential matrix elements using Hylleraas-type trial functions, with a performance optimization study
2424 -- 2449N. Stan Scott, M. Penny Scott, Phil G. Burke, Timothy Stitt, V. Faro-Maza, Christophe Denis, A. Maniopoulou. 2DRMP: A suite of two-dimensional R-matrix propagation codes
2450 -- 2451V. M. Burke, C. J. Noble, V. Faro-Maza, A. Maniopoulou, N. Stan Scott. FARM_2DRMP: A version of FARM for use with 2DRMP
2452 -- 2471Joe Pitt-Francis, Pras Pathmanathan, Miguel O. Bernabeu, Rafel Bordas, Jonathan Cooper, Alexander G. Fletcher, Gary R. Mirams, Philip Murray, James M. Osborne, Alex Walter, S. Jon Chapman, Alan Garny, Ingeborg M. M. van Leeuwen, Philip K. Maini, Blanca Rodríguez, Sarah L. Waters, Jonathan Whiteley, Helen M. Byrne, David Gavaghan. Chaste: A test-driven approach to software development for biological modelling
2472 -- 2498Iosif Legrand, Harvey B. Newman, Ramiro Voicu, Catalin Cirstoiu, Costin Grigoras, Ciprian Dobre, A. Muraru, Alexandru Costan, M. Dediu, Corina Stratan. MonALISA: An agent based, dynamic service system to monitor, control and optimize distributed systems
2499 -- 2512I. Antcheva, M. Ballintijn, B. Bellenot, M. Biskup, Rene Brun, N. Buncic, Philippe Canal, D. Casadei, O. Couet, V. Fine, L. Franco, G. Ganis, A. Gheata, D. Gonzalez Maline, Masaharu Goto, J. Iwaszkiewicz, A. Kreshuk, D. Marcos Segura, R. Maunder, L. Moneta. ROOT - A C++ framework for petabyte data storage, statistical analysis and visualization
2513 -- 2525Stefan J. Zasada, Peter V. Coveney. Virtualizing access to scientific applications with the Application Hosting Environment
2526 -- 2533Marc Baboulin, Alfredo Buttari, Jack Dongarra, Jakub Kurzak, Julie Langou, Julien Langou, Piotr Luszczek, Stanimire Tomov. Accelerating scientific computations with mixed precision algorithms
2534 -- 2543Danny van Dyk, Markus Geveler, Sven Mallach, Dirk Ribbrock, Dominik Göddeke, Carsten Gutwenger. HONEI: A collection of libraries for numerical computations targeting multiple processor architectures
2544 -- 2549N. Sanna, Isabella Baccarelli, G. Morelli. SCELib3.0: The new revision of SCELib, the parallel computational library of molecular properties in the Single Center Approach
2550 -- 2562N. Sanna, Isabella Baccarelli, G. Morelli. The VOLSCAT package for electron and positron scattering of molecular targets: A new high throughput approach to cross-section and resonances computation
2563 -- 2573Akila Gothandaraman, Gregory D. Peterson, G. Lee Warren, Robert J. Hinde, Robert J. Harrison. A Hardware-Accelerated Quantum Monte Carlo framework (HAQMC) for N-body systems
2574 -- 2581Junkyu Lee, Yu Bi, Gregory D. Peterson, Robert J. Hinde, Robert J. Harrison. HASPRNG: Hardware Accelerated Scalable Parallel Random Number Generators
2582 -- 2615X. Gonze, B. Amadon, P.-M. Anglade, J.-M. Beuken, F. Bottin, P. Boulanger, F. Bruneval, D. Caliste, R. Caracas, M. Côté, T. Deutsch, L. Genovese, Ph. Ghosez, M. Giantomassi, S. Goedecker, D. R. Hamann, P. Hermet, F. Jollet, G. Jomard, S. Leroux. ABINIT: First-principles approach to material and nanosystem properties
2616 -- 2621S. D. Kenny, Andrew P. Horsfield. Plato: A localised orbital based density functional theory code
2622 -- 2633Dario Alfè. PHON: A program to calculate phonons using the small displacement method
2634 -- 2649Y. C. Lee, H. M. Thompson, P. H. Gaskell. FILMPAR: A parallel algorithm designed for the efficient and accurate computation of thin film flow on functional surfaces containing micro-structure
2673 -- 2679Manhui Wang, Andrew J. May, Peter J. Knowles. Parallel programming interface for distributed data
2680 -- 2697Mirco Zerbetto, Antonino Polimeno, Vincenzo Barone. Simulation of electron spin resonance spectroscopy in diverse environments: An integrated approach
2698 -- 2716A. Hart, Georg M. von Hippel, R. R. Horgan, E. H. Müller. Automated generation of lattice QCD Feynman rules
2717 -- 2738Karl Jansen, Carsten Urbach. tmLQCD: A program suite to simulate Wilson twisted mass lattice QCD
2739 -- 2748Peter A. Boyle. The BAGEL assembler generation library

Volume 180, Issue 11

2025 -- 2033J. Suarez, S. C. Farantos, S. Stamatiadis, L. Lathouwers. A method for solving the molecular Schrödinger equation in Cartesian coordinates via angular momentum projection operators
2034 -- 2040Songxin Liang, David J. Jeffrey. An efficient analytical approach for solving fourth order boundary value problems
2041 -- 2065Oleg Zatsarinny, Charlotte Froese Fischer. Atomic structure calculations using MCHF and BSR
2066 -- 2078Rio Yokota, Tetsu Narumi, Ryuji Sakamaki, Shun Kameoka, S. Obi, Kenji Yasuoka. Fast multipole methods on a cluster of GPUs for the meshless simulation of turbulence
2079 -- 2094Dong Xu, Jernej Stare, Andrew L. Cooksy. Solving the vibrational Schrödinger equation on an arbitrary multidimensional potential energy surface by the finite element method
2095 -- 2102Lukas Osterloh, Carlos Pérez, David Böhme, José María Baldasano, Christine Böckmann, Lars Schneidenbach, David Vicente. Parallel software for retrieval of aerosol distribution from LIDAR data in the framework of EARLINET-ASOS
2103 -- 2114Jacinto Javier Ibáñez, Vicente Hernández. Solving Differential Matrix Riccati Equations by a piecewise-linearized method based on the conmutant equation
2115 -- 2122S. Srinivas, R. Gayathri, M. Kothandapani. The influence of slip conditions, wall properties and heat transfer on MHD peristaltic transport
2123 -- 2128Yin-Long Zhao, Yin-Ping Liu, Zhi-Bin Li. A modified WTC algorithm for the Painlevé test of nonlinear variable-coefficient PDEs
2140 -- 2142Anthony J. C. Ladd. A fast random number generator for stochastic simulations
2143 -- 2165Johannes Blümlein, Manuel Kauers, Sebastian Klein, Carsten Schneider. Determining the closed forms of the O(s::S:::::3:::) anomalous dimensions and Wilson coefficients from Mellin moments by means of computer algebra
2166 -- 2174Edoardo Milotti, Alessio Del Fabbro, Roberto Chignola. Numerical integration methods for large-scale biophysical simulations
2175 -- 2196Volker Blum, Ralf Gehrke, Felix Hanke, Paula Havu, Ville Havu, Xinguo Ren, Karsten Reuter, Matthias Scheffler. Ab initio molecular simulations with numeric atom-centered orbitals
2197 -- 2209Allen Caldwell, Daniel Kollár, Kevin Kröninger. BAT - The Bayesian analysis toolkit
2210 -- 2217M. M. Rashidi. The modified differential transform method for solving MHD boundary-layer equations
2218 -- 2249Johannes Blümlein. Structural relations of harmonic sums and Mellin transforms up to weight w=5
2250 -- 2257Xinyuan Wu, Xiong You, Jianlin Xia. Order conditions for ARKN methods solving oscillatory systems
2258 -- 2267Dao Thi Nhung, Le Duc Ninh. D0C: A code to calculate scalar one-loop four-point integrals with complex masses
2268 -- 2282Z.-C. Li, C.-S. Chien, H.-T. Huang, B.-W. Jeng. Superconvergence of bi-k-Lagrange elements for eigenvalue problems
2283 -- 2302Tobias F. Illenseer, Wolfgang J. Duschl. Two-dimensional central-upwind schemes for curvilinear grids and application to gas dynamics with angular momentum
2303 -- 2316Jakub T. Moscicki, Frederic Brochu, J. Ebke, Ulrik Egede, J. Elmsheuser, K. Harrison, R. W. L. Jones, H. C. Lee, Dietrich Liko, A. Maier, A. Muraru, Glen N. Patrick, K. Pajchel, W. Reece, B. H. Samset, M. W. Slater, A. Soroko, C. L. Tan, D. C. van der Ster, M. Williams. Ganga: A tool for computational-task management and easy access to Grid resources
2317 -- 2330T. Binoth, J.-Ph. Guillet, G. Heinrich, E. Pilon, T. Reiter. golem95: A numerical program to calculate one-loop tensor integrals with up to six external legs
2331 -- 2338Jingfang Huang, Jun Jia, Bo Zhang. FMM-Yukawa: An adaptive fast multipole method for screened Coulomb interactions
2339 -- 2347Alexei Bazavov, Bernd A. Berg. Program package for multicanonical simulations of U(1) lattice gauge theory
2348 -- 2354O. Peña, U. Pal. Scattering of electromagnetic radiation by a multilayered sphere
2355 -- 2360Thomas Müller, Frank Grave. Motion4D - A library for lightrays and timelike worldlines in the theory of relativity
2361 -- 2391J. Dobaczewski, W. Satula, B. G. Carlsson, J. Engel, P. Olbratowski, P. Powalowski, M. Sadziak, J. Sarich, N. Schunck, A. Staszczak, M. V. Stoitsov, M. Zalewski, H. Zdunczuk. Solution of the Skyrme-Hartree-Fock-Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis.: (VI) hfodd (v2.40h): A new version of the program
2392 -- 2393S. Nath. TERS v2.0: An improved version of TERS
2394 -- 2397Andrzej Daniluk. Model-Driven Development for scientific computing. An upgrade of the RHEEDGr program
2398 -- 2399C. C. Bordeianu, D. Felea, C. Besliu, Al. Jipa, I. V. Grossu. A new version of Scilab software package for the study of dynamical systems

Volume 180, Issue 10

1721 -- 1729Kartika Chandra Sahoo, Yiming Li, Edward Yi Chang. Numerical calculation of the reflectance of sub-wavelength structures on silicon nitride for solar cell application
1730 -- 1745Nicolas Crouseilles, Thomas Respaud, Eric Sonnendrücker. A forward semi-Lagrangian method for the numerical solution of the Vlasov equation
1746 -- 1752Özgür Ergül, Levent Gürel. Discretization error due to the identity operator in surface integral equations
1753 -- 1759W. F. Perger, J. Criswell, Bartolomeo Civalleri, Roberto Dovesi. Ab-initio calculation of elastic constants of crystalline systems with the CRYSTAL code
1760 -- 1767G. B. Jacobs, J. S. Hesthaven. Implicit-explicit time integration of a high-order particle-in-cell method with hyperbolic divergence cleaning
1768 -- 1776D. G. Pretty, B. D. Blackwell. A data mining algorithm for automated characterisation of fluctuations in multichannel timeseries
1777 -- 1794Hongli Yang, Xinyuan Wu, Xiong You, Yonglei Fang. Extended RKN-type methods for numerical integration of perturbed oscillators
1795 -- 1801Xiaojun Tong, Zhu Wang, Haining Yu. A research using hybrid RBF/Elman neural networks for intrusion detection system secure model
1802 -- 1810J. Martín-Vaquero, B. Janssen. Second-order stabilized explicit Runge-Kutta methods for stiff problems
1811 -- 1820Joe J. Monaghan, Jules B. Kajtar. SPH particle boundary forces for arbitrary boundaries
1821 -- 1831Jiaxiang Cai. Multisymplectic numerical method for the regularized long-wave equation
1832 -- 1838Enza De Lauro, Salvatore De Martino, Mariarosaria Falanga, L. Gr. Ixaru. Limit cycles in nonlinear excitation of clusters of classical oscillators
1839 -- 1846D. F. Papadopoulos, Z. A. Anastassi, T. E. Simos. A phase-fitted Runge-Kutta-Nyström method for the numerical solution of initial value problems with oscillating solutions
1847 -- 1852M. Williams. Numerical object oriented quantum field theory calculations
1853 -- 1859Ting-Zhu Huang, Li-Tao Zhang, Tongxiang Gu, Xian-yu Zuo. New block triangular preconditioner for linear systems arising from the discretized time-harmonic Maxwell equations
1860 -- 1869D. Laveder, D. Borgogno, T. Passot, P. L. Sulem. On a semi-implicit scheme for spectral simulations of dispersive magnetohydrodynamics
1870 -- 1873Noriyuki Tanabe, Yasuyuki Ichihashi, Hirotaka Nakayama, Nobuyuki Masuda, Tomoyoshi Ito. Speed-up of hologram generation using ClearSpeed Accelerator board
1874 -- 1881Alexandre M. Tartakovsky, Kim F. Ferris, Paul Meakin. Lagrangian particle model for multiphase flows
1882 -- 1887B. J. Jackin, P. K. Palanisamy. A completely open source based computing system for computer generation of Fourier holograms
1888 -- 1912P. Muruganandam, S. K. Adhikari. Fortran programs for the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap
1913 -- 1940Miroslav Morhác, Vladislav Matousek. Library of sophisticated functions for analysis of nuclear spectra
1941 -- 1955Alessandro Cafarella, Costas G. Papadopoulos, Malgorzata Worek. Helac-Phegas: A generator for all parton level processes
1956 -- 1960P. Domínguez-García, M. A. Rubio. JChainsAnalyser: an ImageJ-based stand-alone application for the study of magneto-rheological fluids
1961 -- 1972Massimiliano Bonomi, Davide Branduardi, Giovanni Bussi, Carlo Camilloni, Davide Provasi, Paolo Raiteri, Davide Donadio, Fabrizio Marinelli, Fabio Pietrucci, Ricardo A. Broglia, Michele Parrinello. PLUMED: A portable plugin for free-energy calculations with molecular dynamics
1973 -- 1982William J. Brouwer, Michael C. Davis, Karl T. Mueller. Optimized multiple quantum MAS lineshape simulations in solid state NMR
1983 -- 1989Paul Martinsen, Johannes Blaschke, Rainer Künnemeyer, Robert Jordan. ® graphics processor
1990 -- 1998Panagiotis Vlachos, Ioannis Karafyllidis. Quantum game simulator, using the circuit model of quantum computation
1999 -- 2001I. V. Grossu, C. Besliu, M. V. Rusu, Al. Jipa, C. C. Bordeianu, D. Felea. Visual tool for estimating the fractal dimension of images
2002 -- 2012Sergei Manzhos, Koichi Yamashita, Tucker Carrington Jr.. Fitting sparse multidimensional data with low-dimensional terms
2013 -- 2019Evgeni S. Penev, Sotiria Lampoudi, Joan-Emma Shea. TiReX: Replica-exchange molecular dynamics using Tinker
2021 -- 2023S. Fritzsche. Maple procedures for the coupling of angular momenta. An up-date of the Racah module
2024 -- 0T. D. Pointon. Erratum to Second-order, exact charge conservation for electromagnetic particle-in-cell simulation in complex geometry [Computer Physics Communications 179 (2008) 535-544]

Volume 180, Issue 1

1 -- 7Hezhu Shao, Zhongcheng Wang. Arbitrarily precise numerical solutions of the one-dimensional Schrödinger equation
8 -- 25Benjamin C. Allanach, C. Balázs, G. Bélanger, M. Bernhardt, F. Boudjema, D. Choudhury, Klaus Desch, Ulrich Ellwanger, Paolo Gambino, R. Godbole, T. Goto, J. Guasch, M. Guchait, T. Hahn, S. Heinemeyer, Cyril Hugonie, T. Hurth, S. Kraml, S. Kreiss, J. Lykken. SUSY Les Houches Accord 2
26 -- 54Nigel Cundy, Stefan Krieg, Guido Arnold, Andreas Frommer, Thomas Lippert, Klaus Schilling. Numerical methods for the QCD overlap operator IV: Hybrid Monte Carlo
55 -- 60Hong Wei Yang. A FDTD analysis on magnetized plasma of Epstein distribution and reflection calculation
61 -- 68Cong-Feng Qiao, Jian Wang, Jian-xiong Wang, Yangheng Zheng. EtabFDC: An eta::b:: event generator in hadroproduction at LHC
69 -- 83Wojciech Broniowski, Maciej Rybczynski, Piotr Bozek. GLISSANDO: GLauber Initial-State Simulation AND mOre..
107 -- 119James Gray, Yang-Hui He, Anton Ilderton, André Lukas. STRINGVACUA. A Mathematica package for studying vacuum configurations in string phenomenology
120 -- 156G. P. Salam, J. Rojo. A Higher Order Perturbative Parton Evolution Toolkit (HOPPET)
157 -- 166A. Otero-de-la-Roza, M. A. Blanco, A. Martín Pendás, Víctor Luaña. Critic: a new program for the topological analysis of solid-state electron densities