Journal: Computer Physics Communications

Volume 183, Issue 9

1845 -- 1848Barbara Schmidt, Matthias Steinhauser. CRunDec: A C++ package for running and decoupling of the strong coupling and quark masses
1849 -- 1859Wanxiang Feng, Jun Wen, Jinjian Zhou, Di Xiao, Yugui Yao. 2 topological invariants within the FP-LAPW formalism
1860 -- 1868Luigi Brugnano, Felice Iavernaro, Donato Trigiante. A two-step, fourth-order method with energy preserving properties
1869 -- 1876Elizabeth Williams, James Tickner. Efficient Monte Carlo simulation of coincidence effects in radioisotope decays including y-y angular correlations
1877 -- 1883Jose Luis Velasco, Andrés Bustos, Francisco Castejón, L. A. Fernandez, Victor Martin-Mayor, Alfonso Tarancón. ISDEP: Integrator of stochastic differential equations for plasmas
1884 -- 1889Topi Siro, Ari Harju. Exact diagonalization of the Hubbard model on graphics processing units
1890 -- 1898Saeed Ovaysi, Mohammad Piri. Multi-GPU acceleration of direct pore-scale modeling of fluid flow in natural porous media
1899 -- 1903Tomasz M. Gwizdalla. The hybrid algorithm for the study of geometric configurations of 2D clusters of uniformly charged classical particles
1904 -- 1910Alberto Talamo, Zhaopeng Zhong, Yousry Gohar. Monte Carlo and deterministic calculation of the Bell and Glasstone spatial correction factor
1911 -- 1919Kevin Jorissen, Fernando D. Vila, John J. Rehr. A high performance scientific cloud computing environment for materials simulations
1920 -- 1927Ydalia Delgado Mercado, Hans Gerd Evertz, Christof Gattringer. Worm algorithms for the 3-state Potts model with magnetic field and chemical potential
1928 -- 1936André Barka, Nicolas Douchin. Asymptotic simplifications for hybrid BEM/GO/PO/PTD techniques based on a Generalized Scattering Matrix approach
1937 -- 1946Siham Tabik, Luis F. Romero, Petar Mimica, Oscar G. Plata, Emilio L. Zapata. VLBI-resolution radio-map algorithms: Performance analysis of different levels of data-sharing on multi-socket, multi-core architectures
1947 -- 1955Enying Li, Hu Wang, Guangyao Li. High dimensional model representation (HDMR) coupled intelligent sampling strategy for nonlinear problems
1956 -- 1965Haochen Li, Jianqiang Sun. A new multi-symplectic scheme for the generalized Kadomtsev-Petviashvili equation
1966 -- 1973M. Gherardi, T. Jourdan, S. Le Bourdiec, G. Bencteux. Hybrid deterministic/stochastic algorithm for large sets of rate equations
1974 -- 1985S. Dalena, P. Chuychai, R. L. Mace, A. Greco, G. Qin, W. H. Matthaeus. Streamline generation code for particle dynamics description in numerical models of turbulence
1986 -- 1992S. Maeyama, A. Ishizawa, Tomohiko Watanabe, N. Nakajima, S. Tsuji-Iio, H. Tsutsui. A hybrid method of semi-Lagrangian and additive semi-implicit Runge-Kutta schemes for gyrokinetic Vlasov simulations
1993 -- 2000Waseem Kamleh, Mike Peardon. Polynomial filtered HMC-an algorithm for lattice QCD with dynamical quarks
2001 -- 2005Evandro F. da Silva, Mário J. de Oliveira. Two versions of the threshold contact model in two dimensions
2006 -- 2013Carroll L. Wainwright. CosmoTransitions: Computing cosmological phase transition temperatures and bubble profiles with multiple fields
2014 -- 2018Timothy J. McIntyre, Alexis I. Bishop. Fringe - A Java-based finite fringe analysis package
2019 -- 2020J. Avellar, L. G. S. Duarte, L. A. C. P. da Mota, N. de Melo, J. E. F. Skea. The Ndynamics package - Numerical analysis of dynamical systems and the fractal dimension of boundaries
2021 -- 2025Dusan Vudragovic, Ivana Vidanovic, Antun Balaz, Paulsamy Muruganandam, Sadhan K. Adhikari. C programs for solving the time-dependent Gross-Pitaevskii equation in a fully anisotropic trap

Volume 183, Issue 8

1563 -- 1567Andrey Asadchev, Mark S. Gordon. Mixed-precision evaluation of two-electron integrals by Rys quadrature
1568 -- 1573Junqi Yin, D. P. Landau. Massively parallel Wang-Landau sampling on multiple GPUs
1574 -- 1577Su Do Yi, Beom Jun Kim. Force correlations in molecular and stochastic dynamics
1578 -- 1587Ezequiel E. Ferrero, Juan Pablo De Francesco, Nicolás Wolovick, Sergio A. Cannas. q-state Potts model metastability study using optimized GPU-based Monte Carlo algorithms
1588 -- 1595Yan Zhao, Xuesong Li, Lin Ma. Multidimensional Monte Carlo model for two-photon laser-induced fluorescence and amplified spontaneous emission
1596 -- 1608Kun-Chang Tseng, T. C. Kuo, S.-C. Lin, C. C. Su, Jong-Shinn Wu. Simulations of subsonic vortex-shedding flow past a 2D vertical plate in the near-continuum regime by the parallelized DSMC code
1609 -- 1616Liquan Mei, Yaping Chen. Numerical solutions of RLW equation using Galerkin method with extrapolation techniques
1617 -- 1633R.-L. Jiang, C. Fang, P. F. Chen. A new MHD code with adaptive mesh refinement and parallelization for astrophysics
1634 -- 1640Adnane Hamiaz, Rudy Klein, Xavier Ferrières, Olivier Pascal, Jean-Pierre Boeuf, Jean-Rene Poirier. Finite Volume Time Domain modelling of microwave breakdown and plasma formation in a metallic aperture
1641 -- 1653Andrea Colagrossi, B. Bouscasse, M. Antuono, S. Marrone. Particle packing algorithm for SPH schemes
1654 -- 1657Hanz Y. Ramírez, Alejandro Santana. Two interacting electrons confined in a 3D parabolic cylindrically symmetric potential, in presence of axial magnetic field: A finite element approach
1658 -- 1663Xi Chen, Z. J. Ding. Solving extra-high-order Rubik's Cube problem by a dynamic simulated annealing
1664 -- 1673Nobuko Ohba, Shuji Ogata, Takahisa Kouno, Tomoyuki Tamura, Ryo Kobayashi. Linear scaling algorithm of real-space density functional theory of electrons with correlated overlapping domains
1674 -- 1682Edoardo Di Napoli, Stefan Blügel, Paolo Bientinesi. Correlations in sequences of generalized eigenproblems arising in Density Functional Theory
1683 -- 1695Georgios Kalantzis, Dimitrios Emfietzoglou, Panagiotis E. Hadjidoukas. A unified spatio-temporal parallelization framework for accelerated Monte Carlo radiobiological modeling of electron tracks and subsequent radiation chemistry
1696 -- 1701Asimina Maniopoulou, Erlend R. M. Davidson, Ricardo Grau-Crespo, Aron Walsh, Ian J. Bush, C. Richard A. Catlow, Scott M. Woodley. Introducing k-point parallelism into VASP
1702 -- 1713B. Pekmen, M. Tezer-Sezgin. Differential quadrature solution of nonlinear Klein-Gordon and sine-Gordon equations
1714 -- 1718Isaac Gabriel Salib, Shimon Haber. Is the cutoff radius in DPD simulations with a fluid of constant density arbitrary?
1719 -- 1727Jukka A. Heikkinen, T. Korpilo, Salomon J. Janhunen, Timo P. Kiviniemi, S. Leerink, Francisco Ogando. Interpolation for momentum conservation in 3D toroidal gyrokinetic particle simulation of plasmas
1728 -- 1743Pengfei Wei, Zhenzhou Lu, Wenrui Hao, Jun Feng, Bintuan Wang. Efficient sampling methods for global reliability sensitivity analysis
1744 -- 1748Gary Yuan, François Gygi. A distributed approach to verification and validation of electronic structure simulation data using ESTEST
1749 -- 1752Gui-Yang Huang, Chong-yu Wang, Jian-Tao Wang. Detailed check of the LDA + U and GGA + U corrected method for defect calculations in wurtzite ZnO
1753 -- 1759Elena Eremina, Yuri Eremin, Natalia Grishina, Thomas Wriedt. New scheme of the Discrete Sources Method for investigation of a near field enhancement by coupled particles
1760 -- 1772J. R. Johansson, P. D. Nation, Franco Nori. QuTiP: An open-source Python framework for the dynamics of open quantum systems
1773 -- 1782A. Jablonski. An effective algorithm for calculating the Chandrasekhar function
1783 -- 1792Moti Umansky, Daphne Weihs. Novel algorithm and MATLAB-based program for automated power law analysis of single particle, time-dependent mean-square displacement
1793 -- 1802Carsten Svaneborg. LAMMPS framework for dynamic bonding and an application modeling DNA
1803 -- 1812Jingjing Zheng, Steven L. Mielke, Kenneth L. Clarkson, Donald G. Truhlar. MSTor: A program for calculating partition functions, free energies, enthalpies, entropies, and heat capacities of complex molecules including torsional anharmonicity
1813 -- 1821T. Pálmai. Regularization of multi-soliton form factors in sine-Gordon model
1822 -- 1831A. Arbey. AlterBBN: A program for calculating the BBN abundances of the elements in alternative cosmologies
1832 -- 1840M. F. Ciappina, T. Kirchner. SymbMat: Symbolic computation of quantum transition matrix elements
1841 -- 1842Russell M. Pitzer. Atomic self-consistent-field program by the basis set expansion method: Columbus version
1843 -- 1844Christian Clason, Gregory von Winckel. A general spectral method for the numerical simulation of one-dimensional interacting fermions

Volume 183, Issue 7

1403 -- 1415François Fillion-Gourdeau, Emmanuel Lorin, André D. Bandrauk. Numerical solution of the time-dependent Dirac equation in coordinate space without fermion-doubling
1416 -- 1421Massimo Bernaschi, Massimiliano Fatica, Giorgio Parisi, L. Parisi. Multi-GPU codes for spin systems simulations
1422 -- 1426Maxwell Hutchinson, Michael Widom. VASP on a GPU: Application to exact-exchange calculations of the stability of elemental boron
1427 -- 1442Haokai Lu, Peng Li. Stochastic projective methods for simulating stiff chemical reacting systems
1443 -- 1447Andreas Mayer, Hanna Salopaasi, Katariina Pussi, Renee D. Diehl. A novel method for the extraction of intensity-energy spectra from low-energy electron diffraction patterns
1448 -- 1467I. Akushevich, O. F. Filoti, A. Ilyichev, N. Shumeiko. Monte Carlo generator ELRADGEN 2.0 for simulation of radiative events in elastic ep-scattering of polarized particles
1468 -- 1480J. M. Cherfils, G. Pinon, Elie Rivoalen. JOSEPHINE: A parallel SPH code for free-surface flows
1481 -- 1490Birgit Hischenhuber, Florian Frommlet, Wolfgang Schreiner, Bernhard Knapp. 2c: Characterization of major histocompatibility α-helices - an information criterion approach
1491 -- 1501Benjamin Lindner, Jeremy C. Smith. Sassena - X-ray and neutron scattering calculated from molecular dynamics trajectories using massively parallel computers
1502 -- 1510C. Schimeczek, D. Engel, G. Wunner. A highly optimized code for calculating atomic data at neutron star magnetic field strengths using a doubly self-consistent Hartree-Fock-Roothaan method
1511 -- 1518Luiz C. Mostaço-Guidolin, Rafael B. Frigori, Leonid Ruchko, Ricardo M. O. Galvão. SCTE: An open-source Perl framework for testing equipment control and data acquisition
1519 -- 1524Feng Feng. A recursive method to calculate UV-divergent parts at one-loop level in dimensional regularization
1525 -- 1559S. Fritzsche. The Ratip program for relativistic calculations of atomic transition, ionization and recombination properties
1560 -- 1561Daniel J. Sindhikara. Modular reweighting software for statistical mechanical analysis of biased equilibrium data

Volume 183, Issue 6

1155 -- 1161Yukihiro Komura, Yutaka Okabe. GPU-based Swendsen-Wang multi-cluster algorithm for the simulation of two-dimensional classical spin systems
1162 -- 1171Wanjie Xiong, Fan Zhong, Shuangli Fan. Positive specific-heat critical exponent of a three-dimensional three-state random-bond Potts model
1172 -- 1181Fengshun Lu, Junqiang Song, Fukang Yin, Xiaoqian Zhu. Performance evaluation of hybrid programming patterns for large CPU/GPU heterogeneous clusters
1182 -- 1191D. Melazzi, D. Curreli, M. Manente, J. Carlsson, D. Pavarin. SPIREs: A Finite-Difference Frequency-Domain electromagnetic solver for inhomogeneous magnetized plasma cylinders
1192 -- 1200Xingang Ren, Zhixiang Huang, Xianliang Wu, Silong Lu, Hui Wang, Lei Wu, Shen Li. High-order unified symplectic FDTD scheme for the metamaterials
1201 -- 1214Céline Degrande, Claude Duhr, Benjamin Fuks, David Grellscheid, Olivier Mattelaer, Thomas Reiter. UFO - The Universal FeynRules Output
1215 -- 1224C. Alexandrou, K. Hadjiyiannakou, G. Koutsou, A. O'Cais, A. Strelchenko. Evaluation of fermion loops applied to the calculation of the η mass and the nucleon scalar and electromagnetic form factors
1225 -- 1236Kun-Mo Lin, Chieh-Tsan Hung, Feng-Nan Hwang, Matthew R. Smith, Y. W. Yang, Jong-Shinn Wu. Development of a parallel semi-implicit two-dimensional plasma fluid modeling code using finite-volume method
1237 -- 1245Janis Timoshenko, Alexei Kuzmin, Juris Purans. Reverse Monte Carlo modeling of thermal disorder in crystalline materials from EXAFS spectra
1246 -- 1249Michaël Magoga, Fabien Archambault, Jorge I. Cerdá. Nt_STM: A step forward in Scanning Tunneling Microscopy (STM) simulations
1250 -- 1258Wei Shi, Xinyuan Wu. On symplectic and symmetric ARKN methods
1259 -- 1268Reza Mokhtari, Majid Mohseni. A meshless method for solving mKdV equation
1269 -- 1289Jack Deslippe, Georgy Samsonidze, David A. Strubbe, Manish Jain, Marvin L. Cohen, Steven G. Louie. BerkeleyGW: A massively parallel computer package for the calculation of the quasiparticle and optical properties of materials and nanostructures
1290 -- 1320Markus Q. Huber, Jens Braun. Algorithmic derivation of functional renormalization group equations and Dyson-Schwinger equations
1321 -- 1335Albert Deuzeman, Siebren Reker, Carsten Urbach. Lemon: An MPI parallel I/O library for data encapsulation using LIME
1336 -- 1353Simon Catterall, Anosh Joseph. An object oriented code for simulating supersymmetric Yang-Mills theories
1354 -- 1362Pawel Jakubczyk, Andrzej Wal, D. Jakubczyk, Tadeusz Lulek. Computer implementation of the Kerov-Kirillov-Reshetikhin algorithm
1363 -- 1380H. P. Nilles, S. Ramos-Sánchez, P. K. S. Vaudrevange, A. Wingerter. The orbifolder: A tool to study the low-energy effective theory of heterotic orbifolds
1381 -- 1396András Vukics. C++QEDv2: The multi-array concept and compile-time algorithms in the definition of composite quantum systems
1397 -- 1401A. Deveikis. A computer program for two-particle intrinsic coefficients of fractional parentage

Volume 183, Issue 5

1061 -- 1072Stefano Tarantola, William Becker, Dirk Zeitz. A comparison of two sampling methods for global sensitivity analysis
1073 -- 1081Omar Awile, Ferit Büyükkeçeci, Sylvain Reboux, Ivo F. Sbalzarini. Fast neighbor lists for adaptive-resolution particle simulations
1082 -- 1093Yiqiang Xu, Luming Zhang. Alternating direction implicit method for solving two-dimensional cubic nonlinear Schrödinger equation
1094 -- 1100Takayuki Umeda, Yasuhiro Nariyuki, Daichi Kariya. A non-oscillatory and conservative semi-Lagrangian scheme with fourth-degree polynomial interpolation for solving the Vlasov equation
1101 -- 1106Omar Ramadan. Unified matrix-exponential FDTD formulations for modeling electrically and magnetically dispersive materials
1107 -- 1123A. Bierwage, C. Di Troia, Sergio Briguglio, Gregorio Vlad. Orbit-based representation of equilibrium distribution functions for low-noise initialization of kinetic simulations of toroidal plasmas
1124 -- 1138Tomoyoshi Shimobaba, Jiantong Weng, Takahiro Sakurai, Naohisa Okada, Takashi Nishitsuji, Naoki Takada, Atsushi Shiraki, Nobuyuki Masuda, Tomoyoshi Ito. Computational wave optics library for C++: CWO++ library
1139 -- 1154Constantinos Voglis, Konstantinos E. Parsopoulos, Dimitris G. Papageorgiou, Isaac E. Lagaris, Michael N. Vrahatis. MEMPSODE: A global optimization software based on hybridization of population-based algorithms and local searches

Volume 183, Issue 4

847 -- 852Juraci P. Reis, Artur F. Menezes, Edmilson M. Souza, Alessandro Facure, Jose A. C. C. Medeiros, Ademir X. Silva. 125I permanent prostate seed implants using the Monte Carlo method
853 -- 863C. Bonati, G. Cossu, M. D'Elia, P. Incardona. QCD simulations with staggered fermions on GPUs
864 -- 879Francisco de la Hoz, Fernando Vadillo. Numerical simulation of the N-dimensional sine-Gordon equation via operational matrices
880 -- 889Mathias Winkel, Robert Speck, Helge Hübner, Lukas Arnold, Rolf Krause, Paul Gibbon. A massively parallel, multi-disciplinary Barnes-Hut tree code for extreme-scale N-body simulations
890 -- 903Nathan Schmid, Clara D. Christ, Markus Christen, Andreas P. Eichenberger, Wilfred F. van Gunsteren. Architecture, implementation and parallelisation of the GROMOS software for biomolecular simulation
904 -- 912Cristóbal Bertoglio, Boris N. Khoromskij. Low-rank quadrature-based tensor approximation of the Galerkin projected Newton/Yukawa kernels
913 -- 921Feng-Gong Lang, Xiao-Ping Xu. Quintic B-spline collocation method for second order mixed boundary value problem
922 -- 930F. Merz, C. Kowitz, Eloy Romero, José E. Román, Frank Jenko. Multi-dimensional gyrokinetic parameter studies based on eigenvalue computations
931 -- 936Vitaliy Ogarko, Stefan Luding. A fast multilevel algorithm for contact detection of arbitrarily polydisperse objects
937 -- 946Sergei Kucherenko, Stefano Tarantola, Paola Annoni. Estimation of global sensitivity indices for models with dependent variables
947 -- 959J. Seebacher, A. Kendl. Towards a unified linear kinetic transport model with the trace ion module for EIRENE
960 -- 970A. Buckley, A. Shilton, M. J. White. Fast supersymmetry phenomenology at the Large Hadron Collider using machine learning techniques
971 -- 979M. Fitzgerald, J. Khachan. A 2-D PIC/MC/Vlasov method for electrostatic fusion discharges
980 -- 985Eiji Tsuchida, Yoong-Kee Choe. Iterative diagonalization of symmetric matrices in mixed precision and its application to electronic structure calculations
986 -- 992Christian Ringl, Herbert M. Urbassek. A LAMMPS implementation of granular mechanics: Inclusion of adhesive and microscopic friction forces
993 -- 997C. A. Duarte. Compact expressions for the magnetoresistance and the electron/hole density of states under the application of magnetic fields
998 -- 1001Yueh-Cheng Kuo, Shih-Feng Shieh, Weichung Wang. Rotational quotient procedure: A tracking control continuation method for PDEs on radially symmetric domains
1002 -- 1013M. Hirai, S. Kumano. 2 evolution equations for fragmentation functions
1014 -- 1028Shigeru Odaka, Yoshimasa Kurihara. GR@PPA 2.8: Initial-state jet matching for weak-boson production processes at hadron collisions
1029 -- 1035R. J. Casperson. IBAR: Interacting boson model calculations for large system sizes
1036 -- 1043M. Kachelrieß, S. Ostapchenko, R. Tomàs. ELMAG: A Monte Carlo simulation of electromagnetic cascades on the extragalactic background light and in magnetic fields
1044 -- 1054K. T. Vu, G. F. Jefferson, J. Carminati. Finding higher symmetries of differential equations using the MAPLE package DESOLVII
1055 -- 1059I. V. Grossu, C. Besliu, Al. Jipa, E. Stan, T. Esanu, D. Felea, C. C. Bordeianu. Code C# for chaos analysis of relativistic many-body systems with reactions
1060 -- 0Tobias Huber, Daniel Maître. HypExp 2, expanding hypergeometric functions about half-integer parameters

Volume 183, Issue 3

449 -- 459W. Michael Brown, Axel Kohlmeyer, Steven J. Plimpton, Arnold N. Tharrington. Implementing molecular dynamics on hybrid high performance computers - Particle-particle particle-mesh
460 -- 469T. Hahn. The high-energy physicistʼs guide to MathLink
470 -- 479A. A. Kosti, Zacharias A. Anastassi, Tom E. Simos. An optimized explicit Runge-Kutta-Nyström method for the numerical solution of orbital and related periodical initial value problems
480 -- 485C. Espejo, T. Rangel, Yann Pouillon, A. H. Romero, Xavier Gonze. Wannier functions approach to van der Waals interactions in ABINIT
486 -- 496Manamohan Prusty, Jia Ning Leaw, Shan Shang Chong, Siew Ann Cheong. Stochastic boundary conditions for grand-canonical-like molecular dynamics simulations of open systems
497 -- 505Grady Schofield, James R. Chelikowsky, Yousef Saad. A spectrum slicing method for the Kohn-Sham problem
506 -- 519U. D. Jentschura, E. Lötstedt. Numerical calculation of Bessel, Hankel and Airy functions
520 -- 529A. Gray, I. Bethune, R. Kenway, L. Smith, Martyn F. Guest, Christine A. Kitchen, P. Calleja, A. Korzynski, S. Rankin, Mike Ashworth, A. Porter, Ilian T. Todorov, M. Plummer, E. Jones, L. Steenman-Clark, B. Ralston, C. Laughton. Mapping application performance to HPC architecture
530 -- 542A. Kopp, I. Büsching, R. D. Strauss, M. S. Potgieter. A stochastic differential equation code for multidimensional Fokker-Planck type problems
543 -- 546S. Ihnatsenka. Computation of electron quantum transport in graphene nanoribbons using GPU
547 -- 551Qiao-Hong Sui, Zhong-Jun Ding, Rui Jiang, Wei Huang, Duo Sun, Bing-Hong Wang. Slow-to-start effect in two-dimensional traffic flow
552 -- 569Shu-Sen Xie, Su-Cheol Yi, Tae In Kwon. Fourth-order compact difference and alternating direction implicit schemes for telegraph equations
570 -- 587Andrei Bourchtein, Ludmila Bourchtein. A semi-implicit time-splitting scheme for a regional nonhydrostatic atmospheric model
588 -- 593Chunye Gong, Jie Liu, Haowei Huang, Zhenghu Gong. Particle transport with unstructured grid on GPU
594 -- 599B. Roostaei, Walter C. Ermler. Electric dipole transition moments and permanent dipole moments for spin-orbit configuration interaction wave functions
600 -- 616Ram Jiwari, Sapna Pandit, R. C. Mittal. Numerical simulation of two-dimensional sine-Gordon solitons by differential quadrature method
617 -- 627Jan L. Cieslinski, Boguslaw Ratkiewicz. Discrete gradient algorithms of high order for one-dimensional systems
628 -- 636Lorenzo Pardini, Valerio Bellini, Franca Manghi, Claudia Ambrosch-Draxl. First-principles calculation of X-ray dichroic spectra within the full-potential linearized augmented planewave method: An implementation into the Wien2k code
637 -- 655R. Ramis, K. Eidmann, J. Meyer-ter-Vehn, S. Hüller. MULTI-fs - A computer code for laser-plasma interaction in the femtosecond regime
656 -- 668Aldée Charbonnier, Céline Combet, David Maurin. clumpy: A code for γ-ray signals from dark matter structures
669 -- 676I. O. Bespamyatnov, W. L. Rowan, K. T. Liao. ALCBEAM - Neutral beam formation and propagation code for beam-based plasma diagnostics
677 -- 689Gundra Kondayya, Alok Shukla. A Fortran 90 Hartree-Fock program for one-dimensional periodic π-conjugated systems using Pariser-Parr-Pople model
690 -- 697David C. Lonie, Eva Zurek. Identifying duplicate crystal structures: XtalComp, an open-source solution
698 -- 704T. C. Petersen, S. P. Ringer. Local electron tomography using angular variations of surface tangents: Stomo version 2
705 -- 710A. Babaev, Yu. L. Pivovarov. Resonant coherent excitation of hydrogen-like ions planar channeled in a crystal; Transition into the first excited state
711 -- 732Dean Lambert, Alasdair C. Hamilton, George Constable, Harsh Snehanshu, Sharvil Talati, Johannes Courtial. TIM, a ray-tracing program for METATOY research and its dissemination
733 -- 736A. V. Nikitin. An efficient code for calculation of the 6C, 9C and 12C symbols for C3v, Td, and Oh point groups
737 -- 745Bruno Juliá-Díaz, Tobias Graß. Strongdeco: Expansion of analytical, strongly correlated quantum states into a many-body basis
746 -- 773Mikolaj Chojnacki, Adam Kisiel, Wojciech Florkowski, Wojciech Broniowski. THERMINATOR 2: THERMal heavy IoN generATOR 2
774 -- 779Debottam Das, Ulrich Ellwanger, Ana M. Teixeira. NMSDECAY: A Fortran code for supersymmetric particle decays in the Next-to-Minimal Supersymmetric Standard Model
780 -- 784Thomas Fischbacher. Numerical tools to validate stationary points of SO(8)-gauged N=8D=4 supergravity
785 -- 793Benjamin C. Allanach, C. H. Kom, M. Hanussek. Computation of neutrino masses in R-parity violating supersymmetry: SOFTSUSY3.2
794 -- 799Amparo Gil, Javier Segura, Nico M. Temme. -1/2+iτ(x)
800 -- 812Tomasz Dziubak, Jacek Matulewski. An object-oriented implementation of a solver of the time-dependent Schrödinger equation using the CUDA technology
813 -- 820Stefan Weinzierl. The SISCone jet algorithm optimised for low particle multiplicities
821 -- 843N. Davidson, G. Nanava, T. Przedzinski, Elzbieta Richter-Was, Z. Was. Universal interface of TAUOLA: Technical and physics documentation
844 -- 845Evgeny Z. Liverts, Nir Barnea. S-states of helium-like ions
846 -- 0Daniel Maître. Extension of HPL to complex arguments

Volume 183, Issue 2

213 -- 230Andrzej Daniluk. Visual modeling for scientific software architecture design. A practical approach
231 -- 244Carlos Alberto Jara, Francisco Esquembre, Wolfgang Christian, Francisco A. Candelas Herías, Fernando Torres, Sebastián Dormido. A new 3D visualization Java framework based on physics principles
245 -- 250Luciano M. de Andrade Filho, José Manoel de Seixas, Roberto Agostino Vitillo, Brian Thomas Martin. Three-dimensional event visualization for the ATLAS calorimeter
251 -- 260K. Roeller, S. Herminghaus, A. Hager-Fingerle. Sinusoidal shaking in event-driven simulations
261 -- 265Yubao Zhen, Chengbiao Chu. A deformation-fluctuation hybrid method for fast evaluation of elastic constants with many-body potentials
266 -- 277S. A. Galindo-Torres, D. M. Pedroso, D. J. Williams, L. Li. Breaking processes in three-dimensional bonded granular materials with general shapes
278 -- 284Yong Gan, J.-K. Chen. A hybrid method for integrated atomistic-continuum simulation of ultrashort-pulsed laser interaction with semiconductors
285 -- 298F. Mahmoudi, Sven Heinemeyer, A. Arbey, A. Bharucha, T. Goto, Thomas Hahn, U. Haisch, S. Kraml, M. Mühlleitner, J. Reuter, P. Skands, P. Slavich. Flavour Les Houches Accord: Interfacing flavour related codes
299 -- 304Georg Bergner, Jaïr Wuilloud. Acceleration of the Arnoldi method and real eigenvalues of the non-Hermitian Wilson-Dirac operator
305 -- 308R. Kleiber, Roman Hatzky. A partly matrix-free solver for the gyrokinetic field equation in three-dimensional geometry
309 -- 315Xuesong Li, Lin Ma. Minimizing binary functions with simulated annealing algorithm with applications to binary tomography
316 -- 319Mingzhe Liu, Xianguo Tuo, Zhe Li, Jianbo Yang, Yang Gao 0001. Asymmetric exclusion process for modeling of information flow
320 -- 323Aleksander A. Stanislavsky, Karina Weron. Numerical scheme for calculating of the fractional two-power relaxation laws in time-domain of measurements
324 -- 332P. M. C. Rourke, S. R. Julian. Numerical extraction of de Haas-van Alphen frequencies from calculated band energies
333 -- 346Ben-Hao Sa, Dai-Mei Zhou, Yu-Liang Yan, Xiao-Mei Li, Sheng-Qin Feng, Bao-Guo Dong, Xu Cai. PACIAE 2.0: An updated parton and hadron cascade model (program) for the relativistic nuclear collisions
347 -- 362S. Kaprzyk. An algebraic formulation and implementation of the tetrahedron linear method for the Brillouin zone integration of spectral functions
363 -- 369T. Hynninen, C. L. Dias, A. Mkrtchyan, V. Heinonen, M. Karttunen, A. S. Foster, T. Ala-Nissila. A molecular dynamics implementation of the 3D Mercedes-Benz water model
370 -- 381Ulrich Hohenester, Andreas Trügler. MNPBEM - A Matlab toolbox for the simulation of plasmonic nanoparticles
382 -- 389Joseph E. Curtis, Sindhu Raghunandan, Hirsh Nanda, Susan Krueger. SASSIE: A program to study intrinsically disordered biological molecules and macromolecular ensembles using experimental scattering restraints
390 -- 397Dennis M. Elking, Lalith E. Perera, Lee G. Pedersen. HPAM: Hirshfeld partitioned atomic multipoles
398 -- 404Matej Batic, Maria Grazia Pia, Sam J. Cipolla. ISICSoo: A class for the calculation of ionization cross sections from ECPSSR and PWBA theory
405 -- 417Christian Clason, Gregory von Winckel. A general spectral method for the numerical simulation of one-dimensional interacting fermions
418 -- 421N. D. Gagunashvili. CHIWEI: A code of goodness of fit tests for weighted and unweighted histograms
422 -- 430Dominik Stöckinger, Philipp Varso. FeynArts model file for MSSM transition counterterms from DREG to DRED
431 -- 437Sami Heinäsmäki. IONIS: Approximate atomic photoionization intensities
438 -- 439Paolo Barletta. COOL: A code for Dynamic Monte Carlo Simulation of molecular dynamics
440 -- 441Kwang Jin Oh, Ji-Hoon Kang, Hun Joo Myung. mm_par2.0: An object-oriented molecular dynamics simulation program parallelized using a hierarchical scheme with MPI and OPENMP
442 -- 445Xian-You Wang, Xing-Gang Wu. A trick to improve the efficiency of generating unweighted Bc events from BCVEGPY
446 -- 447Min Hyung Cho, Wei Cai. Revision of wFMM - A Wideband Fast Multipole Method for the two-dimensional complex Helmholtz equation

Volume 183, Issue 12

2499 -- 2512Beatrice Paternoster. Present state-of-the-art in exponential fitting. A contribution dedicated to Liviu Ixaru on his 70th birthday
2513 -- 2518Liang Chen, Cheng Lv, Xunya Jiang. A re-formulation of the transfer matrix method for calculating wave-functions in higher dimensional disordered open systems
2519 -- 2527Valentin V. Karasiev, Samuel B. Trickey. Issues and challenges in orbital-free density functional calculations
2528 -- 2534Marcelo Fiori, J. E. Miraglia. New approach for approximating the continuum wave function by Gaussian basis set
2535 -- 2541Suzanne Varet, Sidonie Lefebvre, Gérard Durand, Antoine Roblin, Serge Cohen. Effective discrepancy and numerical experiments
2542 -- 2549C. S. Bresolin, A. A. M. Oliveira. An algorithm based on collision theory for the lattice Boltzmann simulation of isothermal mass diffusion with chemical reaction
2550 -- 2560Kun-Mo Lin, M.-H. Hu, Chieh-Tsan Hung, Jong-Shinn Wu, F.-N. Hwang, Y. S. Chen, Gary C. Cheng. A parallel hybrid numerical algorithm for simulating gas flow and gas discharge of an atmospheric-pressure plasma jet
2561 -- 2569Gabriel Voitcu, Marius Echim, Richard Marchand. Comparative study of forward and backward test-kinetic simulation approaches
2570 -- 2580M. Antuono, Andrea Colagrossi, S. Marrone. Numerical diffusive terms in weakly-compressible SPH schemes
2581 -- 2588Alejandro Soba, Edgar Alejandro Bea, Guillaume Houzeaux, Hadrien Calmet, José María Cela. Real-space density functional theory and time dependent density functional theory using finite/infinite element methods
2589 -- 2593E. Hirvijoki, A. Snicker, T. Korpilo, P. Lauber, E. Poli, M. Schneller, T. Kurki-Suonio. Alfvén Eigenmodes and Neoclassical tearing modes for orbit-following implementations
2594 -- 2600Santos B. Yuste, Joaquín Quintana-Murillo. A finite difference method with non-uniform timesteps for fractional diffusion equations
2601 -- 2607R. Krivec. Numerical regularization of Klauder effect in QLM
2608 -- 2615Jean-Luc Fattebert, David F. Richards, James N. Glosli. Dynamic load balancing algorithm for molecular dynamics based on Voronoi cells domain decompositions
2616 -- 2621Suman Sinha. Performance of Wang-Landau algorithm in lattice model of liquid crystals
2622 -- 2628Darko Veberic. Lambert W function for applications in physics
2629 -- 2646T. A. Heltemes, G. A. Moses. BADGER v1.0: A Fortran equation of state library

Volume 183, Issue 11

2315 -- 2321Tarik Hadzibeganovic, F. Welington S. Lima, Dietrich Stauffer. Evolution of tag-mediated altruistic behavior in one-shot encounters on large-scale complex networks
2322 -- 2336Mario Arioli, Serge Gratton. Linear regression models, least-squares problems, normal equations, and stopping criteria for the conjugate gradient method
2337 -- 2345T. V. S. Sekhar, B. Hema Sundar Raju. An efficient higher order compact scheme to capture heat transfer solutions in spherical geometry
2346 -- 2363P. J. Knight, A. Thyagaraja, T. D. Edwards, J. Hein, M. Romanelli, K. G. McClements. CENTORI: A global toroidal electromagnetic two-fluid plasma turbulence code
2364 -- 2369Ki Hwan Kim, Q.-Han Park. Overlapping computation and communication of three-dimensional FDTD on a GPU cluster
2370 -- 2375Alan R. Levin, Deyin Zhang, Eric Polizzi. FEAST fundamental framework for electronic structure calculations: Reformulation and solution of the muffin-tin problem
2376 -- 2385Shin-ichi Satake, Hajime Yoshimori, Takayuki Suzuki. Optimizations of a GPU accelerated heat conduction equation by a programming of CUDA Fortran from an analysis of a PTX file
2386 -- 2391Fernando Casas, Ander Murua, Mladen Nadinic. Efficient computation of the Zassenhaus formula
2392 -- 2404Venera Khoromskaia, D. Andrae, Boris N. Khoromskij. Fast and accurate 3D tensor calculation of the Fock operator in a general basis
2405 -- 2412M. Joulaian, A. Pishevar, S. Khajepor, F. Schmid, Y. Afshar. A new algorithm for simulating flows of conducting fluids in the presence of electric fields
2413 -- 2423Ram Jiwari. A Haar wavelet quasilinearization approach for numerical simulation of Burgers' equation
2424 -- 2433Tiziano Leidi, Giulio Scocchi, Loris Grossi, Simone Pusterla, Claudio D'Angelo, Jean-Philippe Thiran, Alberto Ortona. Computing effective properties of random heterogeneous materials on heterogeneous parallel processors
2434 -- 2440Frederick Ira Moxley III, Tim Byrnes, Fumitaka Fujiwara, Weizhong Dai. A generalized finite-difference time-domain quantum method for the N-body interacting Hamiltonian
2441 -- 2457Markus Q. Huber, Mario Mitter. CrasyDSE: A framework for solving Dyson-Schwinger equations
2458 -- 2469Werner Porod, Florian Staub. SPheno 3.1: extensions including flavour, CP-phases and models beyond the MSSM
2470 -- 2479A. A. Azooz, S. H. Al-Nia'emi, M. A. Al-Jubbori. A parameterization of nuclear track profiles in CR-39 detector
2480 -- 2493Anton Nazarov. Affine.m - Mathematica package for computations in representation theory of finite-dimensional and affine Lie algebras
2494 -- 2497Ján Busa Jr., Shura Hayryan, Ming-Chya Wu, Ján Busa, Chin-Kun Hu. ARVO-CL: The OpenCL version of the ARVO package - An efficient tool for computing the accessible surface area and the excluded volume of proteins via analytical equations

Volume 183, Issue 10

2027 -- 2034Masaharu Matsumoto, Yoshihiro Kajimura, Hideyuki Usui, Ikkoh Funaki, Iku Shinohara. Application of a total variation diminishing scheme to electromagnetic hybrid particle-in-cell plasma simulation
2035 -- 2041N. Dubray, D. Regnier. Numerical search of discontinuities in self-consistent potential energy surfaces
2042 -- 2053D. Viganò, J. A. Pons, J. A. Miralles. A new code for the Hall-driven magnetic evolution of neutron stars
2054 -- 2062Kevin B. Daly, Jay B. Benziger, Pablo G. Debenedetti, Athanassios Z. Panagiotopoulos. Massively parallel chemical potential calculation on graphics processing units
2063 -- 2070Yanchao Wang, Jian Lv, Li Zhu, Yanming Ma. CALYPSO: A method for crystal structure prediction
2071 -- 2080Cathal Ó Broin, L. A. A. Nikolopoulos. An OpenCL implementation for the solution of the time-dependent Schrödinger equation on GPUs and CPUs
2081 -- 2088Bokui Chen, Chuanfei Dong, Yike Liu, Wei Tong, Wenyao Zhang, Jie Liu, Binghong Wang. Real-time information feedback based on a sharp decay weighted function
2089 -- 2097Alejandro León. An efficient model for studying the dynamics of frustrated systems
2098 -- 2106Ram K. Pandey, Om P. Singh, Vipul K. Baranwal, Manoj P. Tripathi. An analytic solution for the space-time fractional advection-dispersion equation using the optimal homotopy asymptotic method
2107 -- 2115Hyun Geun Lee, Junseok Kim. An efficient and accurate numerical algorithm for the vector-valued Allen-Cahn equations
2116 -- 2127H. Kohno, J. R. Myra, D. A. D'Ippolito. A finite element procedure for radio-frequency sheath-plasma interactions in the ion cyclotron range of frequencies
2128 -- 2135Alexei Deinega, Sajeev John. Finite difference discretization of semiconductor drift-diffusion equations for nanowire solar cells
2136 -- 2144Fukuko Yuasa, Elise de Doncker, Nobuyuki Hamaguchi, Tadashi Ishikawa, K. Kato, Yoshimasa Kurihara, Junpei Fujimoto, Yoshimitsu Shimizu. Numerical computation of two-loop box diagrams with masses
2145 -- 2157Bernd A. Berg, Hao Wu. Fortran code for SU(3) lattice gauge theory with and without MPI checkerboard parallelization
2158 -- 2164Feng Feng. $Apart: A generalized Mathematica Apart function
2165 -- 2206Florian Staub, Thorsten Ohl, Werner Porod, Christian Speckner. A tool box for implementing supersymmetric models
2207 -- 2213Lutz Foucar, Anton Barty, Nicola Coppola, Robert Hartmann, Peter Holl, Uwe Hoppe, Stephan Kassemeyer, Nils Kimmel, Jochen Küpper, Mirko Scholz, Simone Techert, Thomas A. White, Lothar Strüder, Joachim Ullrich. CASS - CFEL-ASG software suite
2214 -- 2225Alfonso García-Parrado Gómez-Lobo, José M. Martín-García. Spinors: A Mathematica package for doing spinor calculus in General Relativity
2226 -- 2232Gonzalo Alvarez. Implementation of the SU(2) Hamiltonian symmetry for the DMRG algorithm
2233 -- 2244Victor Liu, Shanhui Fan. 4 : A free electromagnetic solver for layered periodic structures
2245 -- 2253A. Buraczewski, M. Stobinska. Numerical model for macroscopic quantum superpositions based on phase-covariant quantum cloning
2254 -- 2263Priscila de Aquino, William Link, Fabio Maltoni, Olivier Mattelaer, Tim Stelzer. ALOHA: Automatic libraries of helicity amplitudes for Feynman diagram computations
2264 -- 2271Piotr Magierski, Gabriel Wlazlowski. LINPRO: Linear inverse problem library for data contaminated by statistical noise
2272 -- 2281Miguel A. L. Marques, Micael J. T. Oliveira, Tobias Burnus. Libxc: A library of exchange and correlation functionals for density functional theory
2282 -- 2290Daniel Kuchelmeister, Thomas Müller 0005, Marco Ament, Günter Wunner, Daniel Weiskopf. GPU-based four-dimensional general-relativistic ray tracing
2291 -- 2297Amna Noreen, Kåre Olaussen. High precision series solutions of differential equations: Ordinary and regular singular points of second order ODEs
2298 -- 2306Renato M. Fonseca. Calculating the renormalisation group equations of a SUSY model with Susyno
2307 -- 2312H. Hluchá, H. Eberl, W. Frisch. SFOLD - A program package for calculating two-body sfermion decays at full one-loop level in the MSSM
2313 -- 2314J. Avellar, L. G. S. Duarte, L. A. C. P. da Mota. PSsolver: A Maple implementation to solve first order ordinary differential equations with Liouvillian solutions

Volume 183, Issue 1

1 -- 7Matthew G. Reuter, Judith C. Hill, Robert J. Harrison. Solving PDEs in irregular geometries with multiresolution methods I: Embedded Dirichlet boundary conditions
8 -- 14Nobuya Maeshima, Ken-ichi Hino. Parallelization of the R-matrix propagation method for the study of intense-laser-driven semiconductor superlattices
15 -- 19Zhijie Xu, Hai Huang, Xiaoyi Li, Paul Meakin. Phase field and level set methods for modeling solute precipitation and/or dissolution
20 -- 25S. Kaprzyk. An algebraic formulation of the simplex linear method for multiple integrals over the d-dimensional domain
26 -- 29Filip A. Sala. Mobile phone as a platform for numerical simulation
30 -- 33Chuan-Hui Zhang, Qiong Ran, Jiang Shen. Structural stability of silicene-like nanotubes
34 -- 37Y. Nakamura, K.-I. Ishikawa, Y. Kuramashi, Tetsuya Sakurai, Hiroto Tadano. Modified block BiCGSTAB for lattice QCD
38 -- 45Nicolas Bigaouette, Edward Ackad, Lora Ramunno. Nonlinear grid mapping applied to an FDTD-based, multi-center 3D Schrödinger equation solver
46 -- 49Jiantong Weng, Tomoyoshi Shimobaba, Minoru Oikawa, Nobuyuki Masuda, Tomoyoshi Ito. Fast recurrence relation for computer-generated-hologram
50 -- 62Tao Jiang, Jie Ouyang, Jin-Lian Ren, Bin-Xin Yang, Xiao-Yang Xu. A mixed corrected symmetric SPH (MC-SSPH) method for computational dynamic problems
63 -- 69L. Gr. Ixaru. Runge-Kutta method with equation dependent coefficients
70 -- 79J. Waltz, T. A. Gianakon. A comparison of mix models for the Rayleigh-Taylor instability
80 -- 85Roberto Barrio, Marcos Rodríguez, Fernando Blesa. Computer-assisted proof of skeletons of periodic orbits
86 -- 98Zhaoxia Chen, Xiong You, Wei Shi, Zhongli Liu. Symmetric and symplectic ERKN methods for oscillatory Hamiltonian systems
99 -- 105M. S. Reis. Models for one-dimensional molecular magnets
106 -- 117Yezhi Lin, Yinping Liu, Zhibin Li. Symbolic computation of analytic approximate solutions for nonlinear differential equations with initial conditions
118 -- 124Jaroslaw Adam Miszczak. Generating and using truly random quantum states in Mathematica
125 -- 146Valerio Novaresio, María García-Camprubí, Salvador-Izquierdo, Pietro Asinari, Norberto Fueyo. An open-source library for the numerical modeling of mass-transfer in solid oxide fuel cells
147 -- 154Guillem Carles, Carme Ferran, Artur Carnicer, Salvador Bosch. Design and implementation of a scene-dependent dynamically selfadaptable wavefront coding imaging system
155 -- 165Beat Röthlisberger, Jörg Lehmann, Daniel Loss. libCreme: An optimization library for evaluating convex-roof entanglement measures
166 -- 192Nicolas Schunck, J. Dobaczewski, J. McDonnell, W. Satula, J. A. Sheikh, Andrzej Staszczak, M. V. Stoitsov, P. Toivanen. Solution of the Skyrme-Hartree-Fock-Bogolyubov equations in the Cartesian deformed harmonic-oscillator basis.: (VII) hfodd (v2.49t): A new version of the program
193 -- 196N. D. Gagunashvili. CHICOM: A code of tests for comparing unweighted and weighted histograms and two weighted histograms
197 -- 202A. E. Botha. General R-matrix approach for integrating the multiband k.p equation in layered semiconductor structures
203 -- 211Xevi Biarnés, Fabio Pietrucci, Fabrizio Marinelli, Alessandro Laio. METAGUI. A VMD interface for analyzing metadynamics and molecular dynamics simulations