Journal: Computer Physics Communications

Volume 185, Issue 9

2313 -- 2321Seikichi Matsuoka, Shinsuke Satake. Application of an improved control-variate scheme to local neoclassical transport simulations
2322 -- 2339Benjamin C. Allanach, P. Athron, Lewis C. Tunstall, A. Voigt, A. G. Williams. Next-to-minimal SOFTSUSY
2340 -- 2349Mikael Leetmaa, Natalia V. Skorodumova. KMCLib: A general framework for lattice kinetic Monte Carlo (KMC) simulations
2350 -- 2368M. Januszewski, M. Kostur. Sailfish: A flexible multi-GPU implementation of the lattice Boltzmann method
2369 -- 2379P. Halder, A. Chakraborty, P. Deb Roy, H. S. Das. Java application for the superposition T-matrix code to study the optical properties of cosmic dust aggregates
2380 -- 2382Raimar Sandner, András Vukics. C++QEDv2 Milestone 10: A C++/Python application-programming framework for simulating open quantum dynamics

Volume 185, Issue 8

2221 -- 2231Jeremy Witzens. Ab initio calculation of the deformation potential and photoelastic coefficients of silicon with a non-uniform finite-difference solver based on the local density approximation
2232 -- 2239Rafael B. Frigori. Nonextensive lattice gauge theories: Algorithms and methods
2240 -- 2249Hong-lin Liao, Han-sheng Shi, Ying Zhao. Numerical study of fourth-order linearized compact schemes for generalized NLS equations
2250 -- 2300Adam Alloul, Neil D. Christensen, Céline Degrande, Claude Duhr, Benjamin Fuks. FeynRules 2.0 - A complete toolbox for tree-level phenomenology
2301 -- 2308Thomas Müller. GeoViS - Relativistic ray tracing in four-dimensional spacetimes
2309 -- 2310Arash A. Mostofi, Jonathan R. Yates, Giovanni Pizzi, Young-Su Lee, Ivo Souza, David Vanderbilt, Nicola Marzari. An updated version of wannier90: A tool for obtaining maximally-localised Wannier functions
2311 -- 2312Giovanni Pizzi, Dmitri Volja, Boris Kozinsky, Marco Fornari, Nicola Marzari. An updated version of BoltzWann: A code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis

Volume 185, Issue 7

1857 -- 1864Bertrand Rouet-Leduc, Kipton Barros, Emmanuel Cieren, Venmugil Elango, Christoph Junghans, Turab Lookman, Jamaludin Mohd-Yusof, Robert S. Pavel, Axel Y. Rivera, Dominic Roehm, Allen L. McPherson, Timothy C. Germann. Spatial adaptive sampling in multiscale simulation
1865 -- 1874J. E. McClure, J. F. Prins, C. T. Miller. A novel heterogeneous algorithm to simulate multiphase flow in porous media on multicore CPU-GPU systems
1875 -- 1885Kai Kratzer, Joshua T. Berryman, Aaron Taudt, Johannes Zeman, Axel Arnold. The Flexible Rare Event Sampling Harness System (FRESHS)
1886 -- 1892Wei Choon Tay, Eng Leong Tan. Pentadiagonal alternating-direction-implicit finite-difference time-domain method for two-dimensional Schrödinger equation
1893 -- 1900Zhong-Li Liu. Muse: Multi-algorithm collaborative crystal structure prediction
1901 -- 1913Un-Hong Wong, Takayuki Aoki, Hon-Cheng Wong. Efficient magnetohydrodynamic simulations on distributed multi-GPU systems using a novel GPU Direct-MPI hybrid approach
1914 -- 1925D. Melazzi, V. Lancellotti. ADAMANT: A surface and volume integral-equation solver for the analysis and design of helicon plasma sources
1926 -- 1931Pjotrs Grisins, Igor E. Mazets. Metropolis-Hastings thermal state sampling for numerical simulations of Bose-Einstein condensates
1932 -- 1937Attila Boer. GPU-based simulation of the long-range Potts model via parallel tempering
1938 -- 1946H. Doerk, F. Jenko. Towards optimal explicit time-stepping schemes for the gyrokinetic equations
1947 -- 1954Sunil Kumar, Mohammad Mehdi Rashidi. New analytical method for gas dynamics equation arising in shock fronts
1955 -- 1964F. D. Colavecchia. Accelerating spectral atomic and molecular collisions methods with graphics processing units
1965 -- 1980Xueshang Feng, Changqing Xiang, Dingkun Zhong, Yufen Zhou, Liping Yang, Xiaopeng Ma. SIP-CESE MHD model of solar wind with adaptive mesh refinement of hexahedral meshes
1981 -- 1986Cedric Schreiner, Felix Spanier. Wave-particle-interaction in kinetic plasmas
1987 -- 1998James P. Larentzos, John K. Brennan, Joshua D. Moore, Martin Lísal, William D. Mattson. Parallel implementation of isothermal and isoenergetic Dissipative Particle Dynamics using Shardlow-like splitting algorithms
1999 -- 2007Kai Liu, Xinyuan Wu. Multidimensional ARKN methods for general oscillatory second-order initial value problems
2008 -- 2019S. Gowrisankar, Srinivasan Natesan. Robust numerical scheme for singularly perturbed convection-diffusion parabolic initial-boundary-value problems on equidistributed grids
2020 -- 2028Weipeng Hu, Zichen Deng, Yu Zhang. Multi-symplectic method for peakon-antipeakon collision of quasi-Degasperis-Procesi equation
2029 -- 2033H. Wan Chan Tseung, C. Beltran. A graphics processor-based intranuclear cascade and evaporation simulation
2034 -- 2045A. Idesman, D. Pham. Accurate finite element modeling of acoustic waves
2046 -- 2055A. Valentim, M. G. E. da Luz, Carlos E. Fiore. Determining efficient temperature sets for the simulated tempering method
2056 -- 2079M. Petran, Jean Letessier, Johann Rafelski, Giorgio Torrieri. SHARE with CHARM
2080 -- 2089Xiaochuan Ge, Simon J. Binnie, Dario Rocca, Ralph Gebauer, Stefano Baroni. turboTDDFT 2.0 - Hybrid functionals and new algorithms within time-dependent density-functional perturbation theory
2090 -- 2100A. V. Smirnov. FIESTA 3: Cluster-parallelizable multiloop numerical calculations in physical regions
2101 -- 2114Danilo T. Alves, Edney R. Granhen. A computer algebra package for calculation of the energy density produced via the dynamical Casimir effect in one-dimensional cavities
2115 -- 2126Luigi Del Debbio, Nathan Hartland, Steffen Schumann. MCgrid: Projecting cross section calculations on grids
2127 -- 2137Elena Akhmatskaya, Dmitri Sokolovski, C. Echeverría-Arrondo. Numerical Regge pole analysis of resonance structures in elastic, inelastic and reactive state-to-state integral cross sections
2138 -- 2150Max J. Hoffmann, Sebastian Matera, Karsten Reuter. kmos: A lattice kinetic Monte Carlo framework
2151 -- 2194S. Zaghi. OFF, Open source Finite volume Fluid dynamics code: A free, high-order solver based on parallel, modular, object-oriented Fortran API
2195 -- 2216J. A. Maruhn, P.-G. Reinhard, P. D. Stevenson, A. S. Umar. The TDHF code Sky3D
2217 -- 2219Panagiotis E. Hadjidoukas, P. Angelikopoulos, Costas Voglis, Dimitris G. Papageorgiou, Isaac E. Lagaris. NDL-v2.0: A new version of the numerical differentiation library for parallel architectures

Volume 185, Issue 6

1501 -- 1514Sebastian Wouters, Ward Poelmans, Paul W. Ayers, Dimitri Van Neck. CheMPS2: A free open-source spin-adapted implementation of the density matrix renormalization group for ab initio quantum chemistry
1515 -- 1528Ameneh Taleei, Mehdi Dehghan. Time-splitting pseudo-spectral domain decomposition method for the soliton solutions of the one- and multi-dimensional nonlinear Schrödinger equations
1529 -- 1545T. Fritzsche, Thomas Hahn, Sven Heinemeyer, F. von der Pahlen, Heidi Rzehak, C. Schappacher. The implementation of the renormalized complex MSSM in FeynArts and FormCalc
1546 -- 1553Pierre de Buyl, Peter H. Colberg, Felix Höfling. H5MD: A structured, efficient, and portable file format for molecular data
1554 -- 1563Nathan J. Quinlan, Libor Lobovský, Ruairi M. Nestor. Development of the meshless finite volume particle method with exact and efficient calculation of interparticle area
1564 -- 1569Tzu-Liang Chan, Alex J. Lee, James R. Chelikowsky. An effective capacitance model for computing the electronic properties of charged defects in crystals
1570 -- 1581Csaba Nemes, Gergely Barcza, Zoltán Nagy, Örs Legeza, Péter Szolgay. The density matrix renormalization group algorithm on kilo-processor architectures: Implementation and trade-offs
1582 -- 1588Naofumi Kitsunezaki, Atsushi Okabe. Higher-order correction to the FDTD method based on the integral form of Maxwell's equations
1589 -- 1594Veerle Ledoux, Marnix Van Daele. The accurate numerical solution of the Schrödinger equation with an explicitly time-dependent Hamiltonian
1595 -- 1605Ales Vítek, René Kalus. Two-dimensional multiple-histogram method applied to isothermal-isobaric Monte Carlo simulations of molecular clusters
1606 -- 1615Hongwei Li, Xiaonan wu, Jiwei Zhang. Local artificial boundary conditions for Schrödinger and heat equations by using high-order azimuth derivatives on circular artificial boundary
1616 -- 1627Ozlem Ozgun, Mustafa Kuzuoglu. A coordinate transformation approach for efficient repeated solution of Helmholtz equation pertaining to obstacle scattering by shape deformations
1628 -- 1638James Tickner. Arbitrary perturbations in Monte Carlo neutral-particle transport
1639 -- 1646Guido Falk von Rudorff, Christoph Wehmeyer, Daniel Sebastiani. Efficient implementation and application of the artificial bee colony algorithm to low-dimensional optimization problems
1647 -- 1668Valerio Bertone, Stefano Carrazza, Juan Rojo. APFEL: A PDF evolution library with QED corrections
1669 -- 1680S. R. Haskey, B. D. Blackwell, D. G. Pretty. Clustering of periodic multichannel timeseries data with application to plasma fluctuations
1681 -- 1696Alejandro M. Aragón. A C++11 implementation of arbitrary-rank tensors for high-performance computing
1697 -- 1718S. Fritzsche. The Feynman tools for quantum information processing: Design and implementation
1719 -- 1738Teake Nutma. xTras: A field-theory inspired xAct package for mathematica
1739 -- 1746Qingang Xiong, Soroush Aramideh, Alberto Passalacqua, Song-Charng Kong. BIOTC: An open-source CFD code for simulating biomass fast pyrolysis
1747 -- 1758Wu Li, Jesús Carrete, Nebil A. Katcho, Natalio Mingo. ShengBTE: A solver of the Boltzmann transport equation for phonons
1759 -- 1772Maciej Rybczynski, Grzegorz Stefanek, Wojciech Broniowski, Piotr Bozek. GLISSANDO 2: GLauber Initial-State Simulation AND mOre..., ver. 2
1773 -- 1790Florian Staub. SARAH 4: A tool for (not only SUSY) model builders
1791 -- 1807Cathal Ó Broin, L. A. A. Nikolopoulos. A GPGPU based program to solve the TDSE in intense laser fields through the finite difference approach
1808 -- 1821T. Niksic, N. Paar, D. Vretenar, P. Ring. DIRHB - A relativistic self-consistent mean-field framework for atomic nuclei
1822 -- 1827Pierre de Buyl. The vmf90 program for the numerical resolution of the Vlasov equation for mean-field systems
1828 -- 1834J.-Ph. Guillet, G. Heinrich, J. F. von Soden-Fraunhofen. Tools for NLO automation: Extension of the golem95C integral library
1835 -- 1853Tobias Toll, Thomas Ullrich. The dipole model Monte Carlo generator Sartre 1
1854 -- 1855G. Opletal, T. C. Petersen, S. P. Russo. HRMC_2.1: Hybrid Reverse Monte Carlo method with silicon, carbon, germanium and silicon carbide potentials

Volume 185, Issue 5

1355 -- 1363Americo Cunha Jr., Rafael Nasser, Rubens Sampaio, Hélio Lopes, Karin Breitman. Uncertainty quantification through the Monte Carlo method in a cloud computing setting
1364 -- 1369Tarcísio M. Rocha Filho. Molecular dynamics for long-range interacting systems on graphic processing units
1370 -- 1382C. Alexandrou, M. Constantinou, Vincent Drach, K. Hadjiyiannakou, Karl Jansen, G. Koutsou, A. Strelchenko, A. Vaquero. Evaluation of disconnected quark loops for hadron structure using GPUs
1383 -- 1388I.-Lin Ho, Chung-Hsien Chou, Yia-Chung Chang. Theoretical study of electronic transport through quasicrystalline nanotubes using mesh inflation approach
1389 -- 1393Kyle Jay Michel, C. Wolverton. Symmetry building Monte Carlo-based crystal structure prediction
1394 -- 1398M. Bilal, Banaras Khan, H. A. Rahnamaye Aliabad, M. Maqbool, S. Jalai Asadabadi, I. Ahmad. 3 for thermoelectric devices and alternative energy applications
1399 -- 1409Wenting Shao, Xionghua Wu. The numerical solution of the nonlinear Klein-Gordon and Sine-Gordon equations using the Chebyshev tau meshless method
1410 -- 1414D. A. Pigg, A. S. Umar, V. E. Oberacker. Eulerian rotations of deformed nuclei for TDDFT calculations
1415 -- 1421E. C. Howell, C. R. Sovinec. Solving the Grad-Shafranov equation with spectral elements
1422 -- 1428Ken-Ming Lin, Yu-Hui Huang, W. S. Su, T. C. Leung. Strain effects on the band gap and work function of zigzag single-walled carbon nanotubes and graphene: A comparative study
1429 -- 1438Daniel Tapiador, William O'Mullane, A. G. A. Brown, Xavier Luri, Eduardo Huedo, P. Osuna. A framework for building hypercubes using MapReduce
1439 -- 1442Rui Jiang, Mao-Bin Hu, Bin Jia, ZiYou Gao. A new mechanism for metastability of under-saturated traffic responsible for time-delayed traffic breakdown at the signal
1443 -- 1460Z. Bern, L. J. Dixon, F. Febres Cordero, S. Höche, H. Ita, D. A. Kosower, D. Maître. Ntuples for NLO events at hadron colliders
1461 -- 1472Asif Mushtaq, Kåre Olaussen. Automatic code generator for higher order integrators
1473 -- 1476Philipp Kant. Finding linear dependencies in integration-by-parts equations: A Monte Carlo approach
1477 -- 1485Andrew J. Morris, Rebecca J. Nicholls, Chris J. Pickard, Jonathan R. Yates. OptaDOS: A tool for obtaining density of states, core-level and optical spectra from electronic structure codes
1486 -- 1495Daisuke Nishiura, Miki Y. Matsuo, Hide Sakaguchi. ppohDEM: Computational performance for open source code of the discrete element method
1496 -- 1497J. Avellar, M. S. Cardoso, L. G. S. Duarte, L. A. C. P. da Mota. Determining Liouvillian first integrals for dynamical systems in the plane and an integrability analysis
1498 -- 1499C. Schimeczek, D. Engel, G. Wunner. A highly optimized code for calculating atomic data at neutron star magnetic field strengths using a doubly self-consistent Hartree-Fock-Roothaan method

Volume 185, Issue 4

1195 -- 1199Andrew R. Siegel, Kord Smith, Kyle G. Felker, Paul K. Romano, Benoit Forget, P. Beckman. Improved cache performance in Monte Carlo transport calculations using energy banding
1200 -- 1206Pierluigi Amodio, T. Levitina, Giuseppina Settanni, E. B. Weinmüller. Numerical simulation of the whispering gallery modes in prolate spheroids
1207 -- 1216S. V. Dolgov, Boris N. Khoromskij, Ivan V. Oseledets, D. V. Savostyanov. Computation of extreme eigenvalues in higher dimensions using block tensor train format
1217 -- 1222Guo-Kang Er. Probabilistic solutions of some multi-degree-of-freedom nonlinear stochastic dynamical systems excited by filtered Gaussian white noise
1223 -- 1229C. Batistakis, A. V. Lyulin. Simulated glass transition in thin polymer films: Influence of truncating the non-bonded interaction potentials
1230 -- 1236Higinio Ramos, Jesús Vigo-Aguiar. A trigonometrically-fitted method with two frequencies, one for the solution and another one for the derivative
1237 -- 1245Andrew J. Wickersham, Xuesong Li, Lin Ma. Comparison of Fourier, principal component and wavelet analyses for high speed flame measurements
1246 -- 1254François Jollet, Marc Torrent, Natalie Holzwarth. Generation of Projector Augmented-Wave atomic data: A 71 element validated table in the XML format
1255 -- 1264Xu Qian, Songhe Song, Yaming Chen. A semi-explicit multi-symplectic splitting scheme for a 3-coupled nonlinear Schrödinger equation
1265 -- 1272Pedro Valero-Lara, Alfredo Pinelli, Manuel Prieto-Matías. Fast finite difference Poisson solvers on heterogeneous architectures
1273 -- 1281Ilya Valuev, Alexei Deinega, Sergey Belousov. Implementation of the iterative finite-difference time-domain technique for simulation of periodic structures at oblique incidence
1282 -- 1289Randhir Singh, Jitendra Kumar. An efficient numerical technique for the solution of nonlinear singular boundary value problems
1290 -- 1298A. Bouazra, S. Mnasri, S. Abdi-Ben Nasrallah, M. Said. Numerical modeling of the InAs quantum dot with application of coordinate transformation and the finite difference method
1299 -- 1309José Wilson M. Pinto, Luiz N. Oliveira. Recursive computation of matrix elements in the numerical renormalization group
1310 -- 1321E. Hirvijoki, O. Asunta, T. Koskela, T. Kurki-Suonio, J. Miettunen, S. Sipilä, A. Snicker, S. Äkäslompolo. ASCOT: Solving the kinetic equation of minority particle species in tokamak plasmas
1322 -- 1338Mihailo Backovic, José Juknevich. TemplateTagger v1.0.0: A template matching tool for jet substructure
1339 -- 1342I. V. Grossu, C. Besliu, D. Felea, Al. Jipa. High precision framework for chaos many-body engine
1343 -- 1353L. Yu. Barash, L. N. Shchur. PRAND: GPU accelerated parallel random number generation library: Using most reliable algorithms and applying parallelism of modern GPUs and CPUs

Volume 185, Issue 3

697 -- 707Ianik Plante, Luc Devroye, Francis A. Cucinotta. Calculations of distance distributions and probabilities of binding by ligands between parallel plane membranes comprising receptors
708 -- 719Viktor K. Decyk, Tajendra V. Singh. Particle-in-Cell algorithms for emerging computer architectures
720 -- 729Christopher D. Cooper, Jaydeep P. Bardhan, Lorena A. Barba. A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layers
730 -- 735Daniele Barettin, Paolo Sibani. Optimization by record dynamics
736 -- 743D. L. Green, L. A. Berry. Iterative addition of parallel temperature effects to finite-difference simulation of radio-frequency wave propagation in plasmas
744 -- 753X. Pang, L. Rybarcyk. GPU accelerated online multi-particle beam dynamics simulator for ion linear particle accelerators
754 -- 761Bo Li, Keisuke Fujii, Yuanning Gao. Kalman-filter-based track fitting in non-uniform magnetic field with segment-wise helical track model
762 -- 763David W. Schwenke. On the computation of high order Rys quadrature weights and nodes
764 -- 776H. Grimm-Strele, Friedrich Kupka, H. J. Muthsam. Curvilinear grids for WENO methods in astrophysical simulations
777 -- 789Truong Vinh Truong Duy, Taisuke Ozaki. A three-dimensional domain decomposition method for large-scale DFT electronic structure calculations
790 -- 797Hai-wei Sun, Leonard Z. Li. A CCD-ADI method for unsteady convection-diffusion equations
798 -- 808Yufeng Nie, Weiwei Zhang, Nan Qi, Yiqiang Li. Parallel node placement method by bubble simulation
809 -- 817Manoj Kumar, Sapna Pandit. A composite numerical scheme for the numerical simulation of coupled Burgers' equation
818 -- 825Ravishankar Sundararaman, T. A. Arias. Efficient classical density-functional theories of rigid-molecular fluids and a simplified free energy functional for liquid water
826 -- 835Sabrina Stella, Roberto Chignola, Edoardo Milotti. Efficient and extendible class scheme for the combined reaction-diffusion of multiple molecular species
836 -- 840Hailing Xiong, Hang Li, Weiping Chen, Laosheng Wu. Data structure for on-lattice cluster-cluster aggregation model performance optimization
841 -- 846Kasper R. Kuijpers, Lilian de Martín, J. Ruud van Ommen. Optimizing off-lattice Diffusion-Limited Aggregation
847 -- 855Matt Landreman, Adam Stahl, Tünde Fülöp. Numerical calculation of the runaway electron distribution function and associated synchrotron emission
856 -- 861Miao Gao, Gui-Ping Zhang, Zhong-Yi Lu. Electronic transport of a large scale system studied by renormalized transfer matrix method: Application to armchair graphene nanoribbons between quantum wires
862 -- 872Hui Wang, Bo Wu, Zhixiang Huang, Xianliang Wu. A symplectic FDTD algorithm for the simulations of lossy dispersive materials
873 -- 883Fabiano Corsetti. The orbital minimization method for electronic structure calculations with finite-range atomic basis sets
884 -- 899Lukasz Walewski, Harald Forbert, Dominik Marx. Reactive path integral quantum simulations of molecules solvated in superfluid helium
900 -- 907Ivan Cimrák, Markus Gusenbauer, I. Jancigová. An ESPResSo implementation of elastic objects immersed in a fluid
908 -- 916Wei Jiang, James C. Phillips, Lei Huang, Mikolai Fajer, Yilin Meng, James C. Gumbart, Yun Luo, Klaus Schulten, Benoît Roux. Generalized scalable multiple copy algorithms for molecular dynamics simulations in NAMD
917 -- 932Reza Mohammadi. An exponential spline solution of nonlinear Schrödinger equations with constant and variable coefficients
933 -- 938V. B. Zlokazov. Confidence interval optimization for testing hypotheses under data with low statistics
939 -- 947Bohumir Jelinek, Mohsen Eshraghi, Sergio Felicelli, John F. Peters. Large-scale parallel lattice Boltzmann-cellular automaton model of two-dimensional dendritic growth
948 -- 959K. Jansen, H. Leovey, A. Ammon, A. Griewank, M. Müller-Preussker. Quasi-Monte Carlo methods for lattice systems: A first look
960 -- 985G. Bélanger, F. Boudjema, Alexander Pukhov, A. Semenov. micrOMEGAs_3: A program for calculating dark matter observables
986 -- 997Nabil L. Youssef, S. G. Elgendi. New Finsler package
998 -- 1006Jelena Smiljanic, M. Zezelj, V. Milanovic, J. Radovanovic, Igor Stankovic. MATLAB-based program for optimization of quantum cascade laser active region parameters and calculation of output characteristics in magnetic field
1007 -- 1018A. Otero-de-la-Roza, Erin R. Johnson, Víctor Luaña. Critic2: A program for real-space analysis of quantum chemical interactions in solids
1019 -- 1026Michele Ceriotti, Joshua More, David E. Manolopoulos. i-PI: A Python interface for ab initio path integral molecular dynamics simulations
1027 -- 1037Stephen Oxburgh, Tomás Tyc, Johannes Courtial. Dr TIM: Ray-tracer TIM, with additional specialist scientific capabilities
1038 -- 1043Yukihiro Komura, Yutaka Okabe. CUDA programs for the GPU computing of the Swendsen-Wang multi-cluster spin flip algorithm: 2D and 3D Ising, Potts, and XY models
1044 -- 1052Bruno Golosio, Tom Schoonjans, Antonio Brunetti, Piernicola Oliva, Giovanni Luca Masala. Monte Carlo simulation of X-ray imaging and spectroscopy experiments using quadric geometry and variance reduction techniques
1053 -- 1073S. Vanaverbeke, Rony Keppens, Stefaan Poedts. GRADSPMHD: A parallel MHD code based on the SPH formalism
1074 -- 1080Upakarasamy Lourderaj, Rui Sun, Swapnil C. Kohale, George L. Barnes, Wibe A. deJong, Theresa L. Windus, William L. Hase. The VENUS/NWChem software package. Tight coupling between chemical dynamics simulations and electronic structure theory
1081 -- 1084J. Kaspar. Elegent - An elastic event generator
1085 -- 1099David Kauzlaric, Marek Dynowski, Lars Pastewka, Andreas Greiner, Jan G. Korvink. SYMPLER: SYMbolic ParticLE simulatoR with grid-computing interface
1100 -- 1108Thomas Müller. MPPhys - A many-particle simulation package for computational physics education
1109 -- 1114Toni Giorgino. PLUMED-GUI: An environment for the interactive development of molecular dynamics analysis and biasing scripts
1115 -- 1129H. Carli, L. G. S. Duarte, L. A. C. P. da Mota. A Maple package for improved global mapping forecast
1130 -- 1152F. Lyonnet, I. Schienbein, F. Staub, A. Wingerter. PyR@TE: Renormalization group equations for general gauge theories
1153 -- 1171Peter Marquard, Nikolai Zerf. SLAM, a Mathematica interface for SUSY spectrum generators
1172 -- 1176Nicholas V. Sarlis, Stavros-Richard G. Christopoulos. Visualization of the significance of Receiver Operating Characteristics based on confidence ellipses
1177 -- 1187Ulrich Hohenester. Simulating electron energy loss spectroscopy with the MNPBEM toolbox
1188 -- 1191David A. Bonhommeau, Marius Lewerenz, Marie-Pierre Gaigeot. 2 (version 1.1): A Monte Carlo code for multiply-charged clusters
1192 -- 0Santos B. Yuste, Joaquín Quintana-Murillo. Corrigendum to "A finite difference method with non-uniform timesteps for fractional diffusion equations" [Computer Physics Communications 183 (12) (2012) 2594-2600]
1193 -- 0Zhaopeng Zhong, Alberto Talamo, Yousry Gohar. Corrigendum to "Monte Carlo and deterministic computational methods for the calculation of the effective delayed neutron fraction" [Computer Physics Communications 184 (2013) 1660-1665]

Volume 185, Issue 2

445 -- 447Uday K. Khankhoje, Thomas A. Cwik. A mesh reconfiguration scheme for speeding up Monte Carlo simulations of electromagnetic scattering by random rough surfaces
448 -- 458Nicolas Crouseilles, Giovanni Manfredi. Asymptotic preserving schemes for the Wigner-Poisson-BGK equations in the diffusion limit
459 -- 471Yunbao Huang, Shaoen Jiang, Haiyan Li, Qifu Wang, Liping Chen. Compressive analysis applied to radiation symmetry evaluation and optimization for laser-driven inertial confinement fusion
472 -- 478David Greynat, Javier Sesma. A new approach to the epsilon expansion of generalized hypergeometric functions
479 -- 488Ghislain Tchuen, Ferdinand Fogang, Yves Burtschell, Paul Woafo. A hybrid numerical method and its application to inviscid compressible flow problems
489 -- 494Tian Qiu, Teng-Yue Han, Li-Xin Zhong, Zi-Ke Zhang, Guang Chen. Redundant correlation effect on personalized recommendation
495 -- 503E. Westphal, S. P. Singh, C.-C. Huang, Gerhard Gompper, Roland G. Winkler. Multiparticle collision dynamics: GPU accelerated particle-based mesoscale hydrodynamic simulations
504 -- 511Andrzej Ziólkowski. A numerical approach to nonlinear propagation of light in photorefractive media
512 -- 523G. A. Panopoulos, T. E. Simos. A new phase-fitted eight-step symmetric embedded predictor-corrector method (EPCM) for orbital problems and related IVPs with oscillating solutions
524 -- 527Niels Grønbech-Jensen, Natha Robert Hayre, Oded Farago. Application of the G-JF discrete-time thermostat for fast and accurate molecular simulations
528 -- 539Maik Höschele, Jens Hoff, Alexey Pak, Matthias Steinhauser, Takahiro Ueda. MT: A Mathematica package to compute convolutions
540 -- 549Michele Tuttafesta, A. D'Angola, Annarita Laricchiuta, P. Minelli, Mario Capitelli, Gianpiero Colonna. GPU and Multi-core based Reaction Ensemble Monte Carlo method for non-ideal thermodynamic systems
550 -- 559M. Baity-Jesi, Rachel A. Baños, A. Cruz, L. A. Fernandez, J. M. Gil-Narvion, Antonio Gordillo-Guerrero, David Iñiguez, Andrea Maiorano, Filippo Mantovani, Enzo Marinari, Victor Martin-Mayor, J. Monforte-Garcia, Antonio Munoz Sudupe, Denis Navarro, Giorgio Parisi, Sergio Perez Gaviro, Marcello Pivanti, Federico Ricci-Tersenghi, Juan Jesus Ruiz-Lorenzo, Sebastiano Fabio Schifano, B. Seoane, Alfonso Tarancón, Raffaele Tripiccione, David Yllanes. Janus II: A new generation application-driven computer for spin-system simulations
560 -- 571S. Alioli, Simon Badger, J. Bellm, Benedikt Biedermann, F. Boudjema, G. Cullen, A. Denner, H. van Deurzen, S. Dittmaier, R. Frederix, S. Frixione, M. V. Garzelli, S. Gieseke, E. W. N. Glover, N. Greiner, G. Heinrich, V. Hirschi, S. Höche, J. Huston, H. Ita, N. Kauer, F. Krauss, G. Luisoni, D. Maître, F. Maltoni, P. Nason, C. Oleari, R. Pittau, S. Plätzer, S. Pozzorini, L. Reina, C. Reuschle, T. Robens, J. Schlenk, M. Schönherr, F. Siegert, J. F. von Soden-Fraunhofen, F. Tackmann, F. Tramontano, Peter Uwer, G. Salam, P. Skands, S. Weinzierl, J. Winter, Valery Yundin, G. Zanderighi, M. Zaro. Update of the Binoth Les Houches Accord for a standard interface between Monte Carlo tools and one-loop programs
560 -- 571S. Alioli, Simon Badger, J. Bellm, Benedikt Biedermann, F. Boudjema, G. Cullen, A. Denner, H. van Deurzen, S. Dittmaier, R. Frederix, S. Frixione, M. V. Garzelli, S. Gieseke, E. W. N. Glover, N. Greiner, G. Heinrich, V. Hirschi, S. Höche, J. Huston, H. Ita, N. Kauer, F. Krauss, G. Luisoni, D. Maître, F. Maltoni, P. Nason, C. Oleari, R. Pittau, S. Plätzer, S. Pozzorini, L. Reina, C. Reuschle, T. Robens, J. Schlenk, M. Schönherr, F. Siegert, J. F. von Soden-Fraunhofen, F. Tackmann, F. Tramontano, Peter Uwer, G. Salam, P. Skands, S. Weinzierl, J. Winter, Valery Yundin, G. Zanderighi, M. Zaro. Update of the Binoth Les Houches Accord for a standard interface between Monte Carlo tools and one-loop programs
572 -- 577Yueh-Cheng Kuo, Tsung-Lin Lee. Tracking local optimality for cost parameterized optimization problems
578 -- 589J. M. TenBarge, Gregory G. Howes, William Dorland, G. W. Hammett. An oscillating Langevin antenna for driving plasma turbulence simulations
590 -- 594L. J. Höök, T. Johnson. Composition schemes for the stochastic differential equation describing collisional pitch-angle diffusion
595 -- 598Antonio Souto-Iglesias, Fabricio Macià, Leo M. González, Jose L. Cercos-Pita. Addendum to "On the consistency of MPS" [Comput. Phys. Comm. 184 (3) (2013) 732-745]
599 -- 603I. M. Sitnik. Development of the FUMILI minimization package
604 -- 613Gareth A. Tribello, Massimiliano Bonomi, Davide Branduardi, Carlo Camilloni, Giovanni Bussi. PLUMED 2: New feathers for an old bird
614 -- 621C. Schimeczek, G. Wunner. Accurate 2d finite element calculations for hydrogen in magnetic fields of arbitrary strength
622 -- 637Brandon Murakami. SuperLFV: An SLHA tool for lepton flavor violating observables in supersymmetric models
638 -- 650A. Bueno, A. Gascón. CORSIKA implementation of heavy quark production and propagation in extensive air showers
651 -- 660D. Schick, A. Bojahr, M. Herzog, R. Shayduk, C. von Korff Schmising, M. Bargheer. udkm1Dsim - A simulation toolkit for 1D ultrafast dynamics in condensed matter
661 -- 669S. Rama, C. Surendra Dilip, Rajesh Narayana Perumal. A software program to investigate the nucleation kinetics of solution grown crystals using MATLAB platform
670 -- 675Hua-sheng Xie. PDRF: A general dispersion relation solver for magnetized multi-fluid plasma
676 -- 683Sandro Giuseppe Chiodo, Monica Leopoldini. MolSOC: A spin-orbit coupling code
684 -- 694David A. Bonhommeau, Marie-Pierre Gaigeot. 2: A molecular dynamics code for investigating the fragmentation dynamics of multiply charged clusters
695 -- 0M. D. J. Hollis, M. Tessenyi, G. Tinetti. tau: A 1D radiative transfer code for transmission spectroscopy of extrasolar planet atmospheres

Volume 185, Issue 12

3069 -- 3078Sibo Wang, Junbo Xu, Hao Wen. The aggregation and diffusion of asphaltenes studied by GPU-accelerated dissipative particle dynamics
3079 -- 3089Dmitry S. Efremenko, Diego G. Loyola, Adrian Doicu, Robert J. D. Spurr. Multi-core-CPU and GPU-accelerated radiative transfer models based on the discrete ordinate method
3090 -- 3093Diego González, Sergio Davis. Fitting of interatomic potentials without forces: A parallel particle swarm optimization algorithm
3094 -- 3098Omar Ramadan. Unconditionally stable split-step finite difference time domain formulations for double-dispersive electromagnetic materials
3099 -- 3108Xiaopeng Luo, Zhenzhou Lu, Xin Xu. Reproducing kernel technique for high dimensional model representations (HDMR)
3109 -- 3118Hylke C. Donker, Hans De Raedt, Kristel Michielsen. Event-by-event simulation of a quantum delayed-choice experiment
3119 -- 3126N. Yahyaoui, N. Sfina, S. Abdi-Ben Nasrallah, J.-L. Lazzari, M. Said. Electron transport through cubic InGaN/AlGaN resonant tunneling diodes
3127 -- 3140D. Pfefferlé, W. A. Cooper, J. P. Graves, C. Misev. VENUS-LEVIS and its spline-Fourier interpolation of 3D toroidal magnetic field representation for guiding-centre and full-orbit simulations of charged energetic particles
3141 -- 3150Yuri Eremin, Thomas Wriedt. New scheme of the Discrete Sources Method for light scattering analysis of a particle breaking interface
3151 -- 3155Z. Kalogiratou, Th. Monovasilis, Theodore E. Simos. A fourth order modified trigonometrically fitted symplectic Runge-Kutta-Nyström method
3156 -- 3161Ellen Fischermeier, Dominik Bartuschat, Tobias Preclik, Matthieu Marechal, Klaus Mecke. Simulation of a hard-spherocylinder liquid crystal with the pe
3162 -- 3174Venera Khoromskaia, Boris N. Khoromskij. Grid-based lattice summation of electrostatic potentials by assembled rank-structured tensor approximation
3175 -- 3188Johannes M. Dieterich, David B. Krisiloff, Alexander Gaenko, Florian Libisch, Theresa L. Windus, Mark S. Gordon, Emily A. Carter. Shared-memory parallelization of a local correlation multi-reference CI program
3189 -- 3203Jacek Narski, Maurizio Ottaviani. Asymptotic Preserving scheme for strongly anisotropic parabolic equations for arbitrary anisotropy direction
3204 -- 3214David P. Starinshak, J. M. Owen, J. N. Johnson. A new parallel algorithm for constructing Voronoi tessellations from distributed input data
3215 -- 3227Grigor Aslanyan. Cosmo++: An object-oriented C++ library for cosmology
3228 -- 3239Andreas Krämer, Marco Hülsmann, Thorsten Köddermann, Dirk Reith. Automated parameterization of intermolecular pair potentials using global optimization techniques
3240 -- 3249Valentin V. Karasiev, Travis Sjostrom, Samuel B. Trickey. Finite-temperature orbital-free DFT molecular dynamics: Coupling Profess and Quantum Espresso
3250 -- 3258Bernd A. Berg. Detection of a small shift in a broad distribution
3259 -- 3268Kolahal Bhattacharya, Arnab K. Pal, Gobinda Majumder, Naba K. Mondal. Error propagation of the track model and track fitting strategy for the Iron CALorimeter detector in India-based neutrino observatory
3269 -- 3290Orlando Ayala, Hossein Parishani, Liu Chen, Bogdan Rosa, Lian-Ping Wang. DNS of hydrodynamically interacting droplets in turbulent clouds: Parallel implementation and scalability analysis using 2D domain decomposition
3291 -- 3301B. Ph. Van Milligen, P. D. Bons. Simplified numerical model for clarifying scaling behavior in the intermediate dispersion regime in homogeneous porous media
3302 -- 3306Colin W. Glass, Steffen Reiser, Gábor Rutkai, Stephan Deublein, Andreas Köster, Gabriela Guevara-Carrion, Amer Wafai, Martin Horsch, Martin Bernreuther, Thorsten Windmann, Hans Hasse, Jadran Vrabec. ms2: A molecular simulation tool for thermodynamic properties, new version release
3307 -- 3316T. Loke, J.-B. Wang, Y. H. Chen. OptQC: An optimized parallel quantum compiler
3317 -- 3330Michael Borinsky. Feynman graph generation and calculations in the Hopf algebra of Feynman graphs
3331 -- 3340A. Gehrmann-De Ridder, T. Gehrmann, E. W. N. Glover, G. Heinrich. 3
3341 -- 3343Alexander Gusev, Ochbadrakh Chuluunbaatar, Sergey I. Vinitsky, A. G. Abrashkevich. KANTBP 3.0: New version of a program for computing energy levels, reflection and transmission matrices, and corresponding wave functions in the coupled-channel adiabatic approach
3344 -- 3357Huy Nguyen, Hao Shi, Jie Xu, Shiwei Zhang. CPMC-Lab: A Matlab package for Constrained Path Monte Carlo calculations
3358 -- 3371L. Orgogozo, N. Renon, C. Soulaine, F. Hénon, S. K. Tomer, D. Labat, O. S. Pokrovsky, M. Sekhar, R. Ababou, M. Quintard. An open source massively parallel solver for Richards equation: Mechanistic modelling of water fluxes at the watershed scale
3372 -- 3391J. Baglio, R. Gröber, M. Mühlleitner, D. T. Nhung, H. Rzehak, M. Spira, J. Streicher, K. Walz. NMSSMCALC: A program package for the calculation of loop-corrected Higgs boson masses and decay widths in the (complex) NMSSM
3392 -- 3397Yanbiao Chu, Pierre Gautreau, Tarek Ragab, Cemal Basaran. An accelerated algorithm for full band electron-phonon scattering rate computation
3398 -- 3405Yukinobu Koyama, Atsuki Shinbori, Yoshimasa Tanaka, Tomoaki Hori, Masahito Nose, Satoshi Oimatsu. An Interactive Data Language software package to calculate ionospheric conductivity by using numerical models
3406 -- 3411George F. Bertsch, L. M. Robledo. Combinatorial level densities by the real-time method
3412 -- 3423Roberto Contino, Margherita Ghezzi, Christophe Grojean, Margarete Mühlleitner, Michael Spira. eHDECAY: An implementation of the Higgs effective Lagrangian into HDECAY
3424 -- 3429Chao Li, Hailing Xiong. 3D simulation of the Cluster-Cluster Aggregation model
3430 -- 3440Michele Dolfi, Bela Bauer, Sebastian Keller, Alexandr Kosenkov, Timothée Ewart, Adrian Kantian, Thierry Giamarchi, Matthias Troyer. Matrix product state applications for the ALPS project

Volume 185, Issue 11

2803 -- 2808Hanquan Wang, Zhiguo Xu. Projection gradient method for energy functional minimization with a constraint and its application to computing the ground state of spin-orbit-coupled Bose-Einstein condensates
2809 -- 2822Yu-Hang Tang, George E. Karniadakis. Accelerating dissipative particle dynamics simulations on GPUs: Algorithms, numerics and applications
2823 -- 2828Yu-qing Wang, Rui Jiang, Mao-Bin Hu, Qing-Song Wu. Phase transition in a mesoscopic ring with multiple diffusive channels
2829 -- 2833Iftikhar Ahmad, Muhammad Maqbool. Investigation of the optical properties of P, As and Sb incorporated AlGaX alloys using full potential linearized augmented plane wave method
2834 -- 2840Ch. Tsitouras, Vasilios N. Katsikis. ∞ approximations to the matrix cosine
2841 -- 2850Hongli Yang, Xianyang Zeng, Xinyuan Wu, Zhengliang Ru. A simplified Nyström-tree theory for extended Runge-Kutta-Nyström integrators solving multi-frequency oscillatory systems
2851 -- 2858E. G. Evstatiev. Application of the phase space action principle to finite-size particle plasma simulations in the drift-kinetic approximation
2859 -- 2864Nabil L. Youssef, S. G. Elgendi. Computing nullity and kernel vectors using NF-package: Counterexamples
2865 -- 2873Lukas Einkemmer, Matthias Wiesenberger. A conservative discontinuous Galerkin scheme for the 2D incompressible Navier-Stokes equations
2874 -- 2878Iulian Petrila, Vasile Manta. Metropolis Monte Carlo analysis of all-optical switching
2879 -- 2884S. V. Utyuzhnikov. Towards development of unsteady near-wall interface boundary conditions for turbulence modeling
2885 -- 2892Jesper Kristensen, Nicholas Zabaras. Bayesian uncertainty quantification in the evaluation of alloy properties with the cluster expansion method
2893 -- 2902Jakub Benda, Karel Houfek. Collisions of electrons with hydrogen atoms I. Package outline and high energy code
2903 -- 2912Jakub Benda, Karel Houfek. Collisions of electrons with hydrogen atoms II. Low-energy program using the method of the exterior complex scaling
2913 -- 2919K. Pachucki, M. Puchalski, V. A. Yerokhin. Extended Gaussian quadratures for functions with an end-point singularity of logarithmic type
2920 -- 2929Cristina Paissoni, Dimitrios Spiliotopoulos, Giovanna Musco, Andrea Spitaleri. GMXPBSA 2.0: A GROMACS tool to perform MM/PBSA and computational alanine scanning
2930 -- 2938Michal Czakon, Alexander Mitov. Top++: A program for the calculation of the top-pair cross-section at hadron colliders
2939 -- 2949Lu-Ping Wan, Jian-xiong Wang. FDCHQHP: A Fortran package for heavy quarkonium hadroproduction
2950 -- 2968Yi Wang, Long-Qing Chen, Zi-Kui Liu. YPHON: A package for calculating phonons of polar materials
2969 -- 2991Xavier Antoine, Romain Duboscq. GPELab, a Matlab toolbox to solve Gross-Pitaevskii equations I: Computation of stationary solutions
2992 -- 3000Sebastian Boblest, Dirk Meyer, Günter Wunner. Multi-electron systems in strong magnetic fields II: A fixed-phase diffusion quantum Monte Carlo application based on trial functions from a Hartree-Fock-Roothaan method
3001 -- 3009Andrzej Daniluk. RHEED intensities from two-dimensional heteroepitaxial nanoscale systems
3010 -- 3015Joseph E. Curtis, Hailiang Zhang, Hirsh Nanda. SLDMOL: A tool for the structural characterization of thermally disordered membrane proteins
3016 -- 3027Iurii Karpenko, Pasi Huovinen, Marcus Bleicher. A 3+1 dimensional viscous hydrodynamic code for relativistic heavy ion collisions
3028 -- 3040Freddie D. Witherden, Antony M. Farrington, Peter E. Vincent. PyFR: An open source framework for solving advection-diffusion type problems on streaming architectures using the flux reconstruction approach
3041 -- 3058Vladimir V. Bytev, Mikhail Yu. Kalmykov, Sven-Olaf Moch. S Horn-type hypergeometric functions of three variables
3059 -- 3061I. V. Grossu, D. Felea, Al. Jipa, C. Besliu, E. Stan, O. Ristea, C. Ristea, M. Calin, T. Esanu, C. C. Bordeianu, N. Tuturas. CMBE v05 - Implementation of a toy-model for chaos analysis of relativistic nuclear collisions at the present BNL energies
3062 -- 3064A. Stepsys, S. Mickevicius, D. Germanas, R. K. Kalinauskas. HOTB: High precision parallel code for calculation of four-particle harmonic oscillator transformation brackets
3065 -- 3066Alejandro M. Aragón. A C++11 implementation of arbitrary-rank tensors for high-performance computing
3067 -- 3068B. Mohammed-Azizi, D. E. Medjadi. Single particle calculations for a Woods-Saxon potential with triaxial deformations, and large Cartesian oscillator basis (TRIAXIAL 2014, Third version of the code Triaxial)

Volume 185, Issue 10

2383 -- 2386R. F. Abdul, R. L. Mace. A method to generate kappa distributed random deviates for particle-in-cell simulations
2387 -- 2390Zhong Peng, Hong Wei Yang, Rui Weng, Yingjie Gao, Ze Kun Yang. A research on the CN-ICCG-FDTD algorithm of plasma photonic crystals and the transmission coefficient of electromagnetic wave
2391 -- 2402Guangye Chen, Luis Chacón. An energy- and charge-conserving, nonlinearly implicit, electromagnetic 1D-3V Vlasov-Darwin particle-in-cell algorithm
2403 -- 2411Wenjun Cai, Yushun Wang, Yongzhong Song. Derivation of the multisymplectic Crank-Nicolson scheme for the nonlinear Schrödinger equation
2412 -- 2426K. C. Ng, Y.-H. Hwang, T. W. H. Sheu. On the accuracy assessment of Laplacian models in MPS
2427 -- 2435Jean Michel D. Sellier, Ivan Dimov. The Wigner-Boltzmann Monte Carlo method applied to electron transport in the presence of a single dopant
2436 -- 2448Andreas Eitzlmayr, Gerold Koscher, Johannes Khinast. A novel method for modeling of complex wall geometries in smoothed particle hydrodynamics
2449 -- 2455Shuying Zhai, Xinlong Feng, Yinnian He. Numerical simulation of the three dimensional Allen-Cahn equation by the high-order compact ADI method
2456 -- 2466S. J. Eder, D. Bianchi, U. Cihak-Bayr, A. Vernes, G. Betz. An analysis method for atomistic abrasion simulations featuring rough surfaces and multiple abrasive particles
2467 -- 2478Ye Fang, Sheng Feng, Ka-Ming Tam, Zhifeng Yun, Juana Moreno, Jagannathan Ramanujam, Mark Jarrell. Parallel tempering simulation of the three-dimensional Edwards-Anderson model with compact asynchronous multispin coding on GPU
2479 -- 2486Jerome P. Nilmeier, Jaime Marian. A rigorous sequential update strategy for parallel kinetic Monte Carlo simulation
2487 -- 2494Benjamin Ragan-Kelley, John P. Verboncoeur, Ming-Chieh Lin. Optimizing physical parameters in 1-D particle-in-cell simulations with Python
2495 -- 2503Massimo Bernaschi, Mauro Bisson, Francesco Salvadore. Multi-Kepler GPU vs. multi-Intel MIC for spin systems simulations
2504 -- 2509Yi-an Huang, Yu-Ting Hung, Snow H. Tseng. An optical target to eliminate impinging light in a light scattering simulation
2510 -- 2518Walter Rodrigues, A. Pecchia, M. Lopez, M. Auf der Maur, A. Di Carlo. Accelerating atomistic calculations of quantum energy eigenstates on graphic cards
2519 -- 2526M. Robinson, N. A. Marks. NanoCap: A framework for generating capped carbon nanotubes and fullerenes
2527 -- 2537J. M. Franco, I. Gómez, L. Rández. Optimization of explicit two-step hybrid methods for solving orbital and oscillatory problems
2538 -- 2557Andrea Lani, Mehmet Sarp Yalim, Stefaan Poedts. A GPU-enabled Finite Volume solver for global magnetospheric simulations on unstructured grids
2558 -- 2565Miguel Cárdenas Montes, Juan José Rodríguez-Vázquez, Miguel A. Vega-Rodríguez, Ignacio Sevilla-Noarbe, Eusebio Sánchez Álvaro. Performance and precision of histogram calculation on GPUs: Cosmological analysis as a case study
2566 -- 2574Mark Mawson, Alistair Revell. Memory transfer optimization for a lattice Boltzmann solver on Kepler architecture nVidia GPUs
2575 -- 2585Yousuke Ohno, Rio Yokota, Hiroshi Koyama, Gentaro Morimoto, Aki Hasegawa, Gen Masumoto, Noriaki Okimoto, Yoshinori Hirano, Huda Ibeid, Tetsu Narumi, Makoto Taiji. Petascale molecular dynamics simulation using the fast multipole method on K computer
2586 -- 2597Ulf D. Schiller. A unified operator splitting approach for multi-scale fluid-particle coupling in the lattice Boltzmann method
2598 -- 2608Jungpyo Lee, John C. Wright. A block-tridiagonal solver with two-level parallelization for finite element-spectral codes
2609 -- 2621Matteo Antuono, B. Bouscasse, Andrea Colagrossi, Salvatore Marrone. A measure of spatial disorder in particle methods
2622 -- 2628S. Safaei Arshi, A. Zolfaghari, S. M. Mirvakili. A multi-objective shuffled frog leaping algorithm for in-core fuel management optimization
2629 -- 2635S. V. Chekanov, E. May, K. Strand, Peter van Gemmeren. ProMC: Input-output data format for HEP applications using varint encoding
2636 -- 2654A. A. Gusev, Ochbadrakh Chuluunbaatar, Sergey I. Vinitsky, A. G. Abrashkevich. POTHEA: A program for computing eigenvalues and eigenfunctions and their first derivatives with respect to the parameter of the parametric self-adjoined 2D elliptic partial differential equation
2655 -- 2662C. Schimeczek, G. Wunner. Multi-electron systems in strong magnetic fields I: The 2D Landau-Hartree-Fock-Roothaan method
2663 -- 2682E. Francisco, A. Martín Pendás. Electron number distribution functions from molecular wavefunctions. Version 2
2683 -- 2696M. Molero-Armenta, Ursula Iturrarán-Viveros, S. Aparicio, M. G. Hernández. Optimized OpenCL implementation of the Elastodynamic Finite Integration Technique for viscoelastic media
2697 -- 2702A. H. Markosyan, A. Luque, F. J. Gordillo-Vázquez, U. Ebert. PumpKin: A tool to find principal pathways in plasma chemical models
2703 -- 2713Stephan Buehler, Claude Duhr. CHAPLIN - Complex Harmonic Polylogarithms in Fortran
2714 -- 2723Xin Guan, Kristina D. Launey, Mingxia Xie, Lina Bao, Feng Pan, Jerry P. Draayer. Numerical algorithm for the standard pairing problem based on the Heine-Stieltjes correspondence and the polynomial approach
2724 -- 2729Israel Joel Koenka, Jorge Sáiz, Peter C. Hauser. Instrumentino: An open-source modular Python framework for controlling Arduino based experimental instruments
2730 -- 2741Chun Shen, Fengxian Sun, Xinlin Xia. Implementation of density-based solver for all speeds in the framework of OpenFOAM
2742 -- 2757Koki Murano, Tomoyoshi Shimobaba, Atsushi Sugiyama, Naoki Takada, Takashi Kakue, Minoru Oikawa, Tomoyoshi Ito. Fast computation of computer-generated hologram using Xeon Phi coprocessor
2758 -- 2770Juan J. Galiana-Merino, C. Pla, A. Fernandez-Cortes, S. Cuezva, J. Ortiz, D. Benavente. EnvironmentalWaveletTool: Continuous and discrete wavelet analysis and filtering for environmental time series
2771 -- 2797Tiziano Peraro. Ninja: Automated integrand reduction via Laurent expansion for one-loop amplitudes
2798 -- 2799Thomas Müller. Motion4D-library extended
2800 -- 0I. M. Sitnik. Development of the FUMILI minimization package
2801 -- 2802Mikhail S. Litsarev, Ivan V. Oseledets. The DEPOSIT computer code based on the low rank approximations

Volume 185, Issue 1

2 -- 10Venera Khoromskaia, Boris N. Khoromskij. Møller-Plesset (MP2) energy correction using tensor factorization of the grid-based two-electron integrals
11 -- 18Miguel Cárdenas Montes, Miguel A. Vega-Rodríguez, Christopher Bonnett, Ignacio Sevilla-Noarbe, Rafael Ponce, Eusebio Sánchez Álvaro, Juan José Rodríguez-Vázquez. GPU-based shear-shear correlation calculation
19 -- 27Xiaopeng Luo, Zhenzhou Lu, Xin Xu. A fast computational method for moment-independent uncertainty importance measure
28 -- 39Zheyong Fan, Andreas Uppstu, Topi Siro, Ari Harju. Efficient linear-scaling quantum transport calculations on graphics processing units and applications on electron transport in graphene
40 -- 52René Hammer, Walter Pötz. Staggered grid leap-frog scheme for the (2+1) D Dirac equation
53 -- 62Xin Bian, Marco Ellero. A splitting integration scheme for the SPH simulation of concentrated particle suspensions
63 -- 78Zhenlin Guo, Ping Lin, Yangfan Wang. Continuous finite element schemes for a phase field model in two-layer fluid Bénard-Marangoni convection computations
79 -- 85Akira Kageyama, Tomoki Yamada. An approach to exascale visualization: Interactive viewing of in-situ visualization
86 -- 95A. Perona, D. Borgogno, Lars-Goran Eriksson. A test electron model for the study of three dimensional magnetic reconnection effects
96 -- 105Wenjun Deng, Guo-Yong Fu. Optimization by marker removal for δf particle simulations
106 -- 127Rooholah Abedian, Hojatollah Adibi, Mehdi Dehghan. A high-order symmetrical weighted hybrid ENO-flux limiter scheme for hyperbolic conservation laws
128 -- 135J. Squire, J. Burby, H. Qin. VEST: Abstract vector calculus simplification in Mathematica
136 -- 143Edgar A. Gómez, Saravana Prakash Thirumuruganandham, Alejandro Santana. Split-operator technique for propagating phase space functions: Exploring chaotic, dissipative and relativistic dynamics
144 -- 152Un-Hong Wong, Hon-Cheng Wong, Yonghui Ma. Global magnetohydrodynamic simulations on multiple GPUs
153 -- 164Truong Vinh Truong Duy, Taisuke Ozaki. A decomposition method with minimum communication amount for parallelization of multi-dimensional FFTs
165 -- 176N. B. Marushchenko, Y. Turkin, H. Maassberg. Ray-tracing code TRAVIS for ECR heating, EC current drive and ECE diagnostic
177 -- 180M. Dima. Flash vertexing algorithms for trigger applications
181 -- 193Steven F. Henke, Sachin Shanbhag. Mesh sensitivity in peridynamic simulations
194 -- 216Ulrich Hohenester. OCTBEC - A Matlab toolbox for optimal quantum control of Bose-Einstein condensates
217 -- 228S. Eder, A. Vernes, G. Betz. Methods and numerical aspects of nanoscopic contact area estimation in atomistic tribological simulations
229 -- 235Nhan Phan-Thien, Nam Mai-Duy, Dingyi Pan, B. C. Khoo. Exponential-time differencing schemes for low-mass DPD systems
236 -- 243V. P. Druzhinin, L. V. Kardapoltsev, V. A. Tayursky. -+) in the single-tag mode
244 -- 253Daniel X. Ogburn, Colin L. Waters, Murray D. Sciffer, Jeff A. Hogan, Paul C. Abbott. A finite difference construction of the spheroidal wave functions
254 -- 267K. D. Launey, S. Sarbadhicary, Tomás Dytrych, Jerry P. Draayer. Program in C for studying characteristic properties of two-body interactions in the framework of spectral distribution theory
268 -- 273Richard W. Bowman, Graham M. Gibson, Anna Linnenberger, David B. Phillips, James A. Grieve, David M. Carberry, Steven Serati, Mervyn J. Miles, Miles Padgett. "Red Tweezers": Fast, customisable hologram generation for optical tweezers
274 -- 293Eduardo X. Miqueles, Tiago A. Coimbra, Bruno D. Amaro, J. J. S. de Figueiredo. Analytical ray tracing system: Introducing art, a C-library designed for seismic applications
294 -- 301Aaron M. Tagliaboschi, Jeremy B. Maddox. POTLIB2Math: A Mathematica interface to the potential energy surface library for chemical systems
302 -- 306Soubhadra Sen, N. Mohankumar. Migpore, a code package for the estimation of migration of radioactive species in a porous medium
307 -- 316J. Avellar, L. G. S. Duarte, L. A. C. P. da Mota. A Maple package to find first order differential invariants of 2ODEs via a Darboux approach
317 -- 322Toni Giorgino. Computing 1-D atomic densities in macromolecular simulations: The density profile tool for VMD
323 -- 329Karol Kolodziej. carlomat, version 2 of the program for automatic computation of lowest order cross sections
330 -- 338J. Buckeridge, D. O. Scanlon, Aron Walsh, C. Richard A. Catlow. Automated procedure to determine the thermodynamic stability of a material and the range of chemical potentials necessary for its formation relative to competing phases and compounds
339 -- 349Yuan-Pin Chang, Frank Filsinger, Boris G. Sartakov, Jochen Küpper. CMIstark: Python package for the Stark-effect calculation and symmetry classification of linear, symmetric and asymmetric top wavefunctions in dc electric fields
350 -- 356A. A. Azooz, Y. A. Al-Jawaady, Z. T. Ali. Langmuir probe RF plasma compensation using a simulation method
357 -- 367Qian Miao, Yunhu Wang, Yong Chen, Yunqing Yang. PDEBellII: A Maple package for finding bilinear forms, bilinear Bäcklund transformations, Lax pairs and conservation laws of the KdV-type equations
368 -- 379A. A. Babaev. Parallel code NSBC: Simulations of relativistic nuclei scattering by a bent crystal
380 -- 391E. V. Correa Silva, G. A. Monerat, G. de Oliveira Neto, L. G. Ferreira Filho. Spectral: Solving Schroedinger and Wheeler-DeWitt equations in the positive semi-axis by the spectral method
392 -- 397Claudio A. Gelmi, Héctor Jorquera. IDSOLVER: A general purpose solver for nth-order integro-differential equations
398 -- 406M. F. Ciappina, J. A. Pérez-Hernández, M. Lewenstein. ClassSTRONG: Classical simulations of strong field processes
407 -- 414Claude M. Dion, A. Hashemloo, G. Rahali. Program for quantum wave-packet dynamics with time-dependent potentials
415 -- 421Petros Souvatzis. Uquantchem: A versatile and easy to use quantum chemistry computational software
422 -- 429Giovanni Pizzi, Dmitri Volja, Boris Kozinsky, Marco Fornari, Nicola Marzari. BoltzWann: A code for the evaluation of thermoelectric and electronic transport properties with a maximally-localized Wannier functions basis
430 -- 441G. F. Jefferson, J. Carminati. FracSym: Automated symbolic computation of Lie symmetries of fractional differential equations
442 -- 443Erhan Okuyan, Ugur Güdükbay. BilKristal 2.0: A tool for pattern information extraction from crystal structures