Jaydeep P. Bardhan - researchr alias

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Viewing Publication 1 - 17 from 17

2021

DOE Computational Science Graduate Fellowship Research ShowcaseJaydeep P. Bardhan, Mary Ann E. Leung, Eileen Martin, Amanda Randles. cse, 23(6):5-8, 2021. [doi]

2020

High-performance transformation of protein structure representation from internal to Cartesian coordinatesMahsa Bayati, Miriam Leeser, Jaydeep P. Bardhan. jcc, 41(24):2104-2114, 2020. [doi]

2018

Dirichlet Priors for MAP Inference of Protein Conformation Abundances from SAXSA. Emre Onuk, Murat Akçakaya, Jaydeep P. Bardhan, Deniz Erdogmus, Dana H. Brooks, Lee Makowski. vlsisp, 90(2):167-174, 2018. [doi]

2016

A framework to optimize protein structure from solution scattering using ADMM and an elastic subdomain networkBiel Roig-Solvas, Jaydeep P. Bardhan, Deniz Erdogmus, Dana H. Brooks, Lee Makowski. isbi 2016: 145-149 [doi]

2015

2014

Accelerating protein coordinate conversion using GPUsMahsa Bayati, Jaydeep P. Bardhan, David M. King, Miriam Leeser. hpec 2014: 1-6 [doi]

A biomolecular electrostatics solver using Python, GPUs and boundary elements that can handle solvent-filled cavities and Stern layersChristopher D. Cooper, Jaydeep P. Bardhan, Lorena A. Barba. cphysics, 185(3):720-729, 2014. [doi]

2012

Fast Solvers for Molecular Science and EngineeringJaydeep P. Bardhan. dt, 29(3):40-48, 2012. [doi]

2011

A fast solver for nonlocal electrostatic theory in biomolecular science and engineeringJaydeep P. Bardhan, Andreas Hildebrandt. dac 2011: 801-805 [doi]

Biomolecular electrostatics using a fast multipole BEM on up to 512 gpus and a billion unknownsRio Yokota, Jaydeep P. Bardhan, Matthew G. Knepley, Lorena A. Barba, Tsuyoshi Hamada. cphysics, 182(6):1272-1283, 2011. [doi]

2009

Accurate solution of multi-region continuum biomolecule electrostatic problems using the linearized Poisson-Boltzmann equation with curved boundary elementsMichael D. Altman, Jaydeep P. Bardhan, Jacob K. White, Bruce Tidor. jcc, 30(1):132-153, 2009. [doi]

2007

Efficient optimization of electrostatic interactions between biomoleculesJaydeep P. Bardhan, Michael D. Altman, Jacob K. White, Bruce Tidor. cdc 2007: 4563-4569 [doi]

2006

FFTSVD: A Fast Multiscale Boundary-Element Method Solver Suitable for Bio-MEMS and Biomolecule SimulationMichael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White. tcad, 25(2):274-284, 2006. [doi]

Efficient numerical algorithms for surface formulations of mathematical models for biomolecule analysis and designJaydeep P. Bardhan. PhD thesis, Massachusetts Institute of Technology, Cambridge, MA, USA, 2006. [doi]

2002

Fast methods for simulation of biomolecule electrostaticsShihhsien S. Kuo, Michael D. Altman, Jaydeep P. Bardhan, Bruce Tidor, Jacob K. White. iccad 2002: 466-473 [doi]

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