Journal: IEEE Design & Test of Computers

Volume 31, Issue 1

8 -- 18Turbo Majumder, Partha Pratim Pande, Ananth Kalyanaraman. Hardware Accelerators in Computational Biology: Application, Potential, and Challenges
19 -- 30Srinivas Aluru, N. Jammula. A Review of Hardware Acceleration for Computational Genomics
31 -- 39Yongchao Liu, Bertil Schmidt. CUSHAW2-GPU: Empowering Faster Gapped Short-Read Alignment Using GPU Computing
40 -- 50S. Schlachter, S. Herbein, Shuching Ou, J. S. Logan, Sandeep Patel, Michela Taufer. Pursuing Coordinated Trajectory Progression and Efficient Resource Utilization of GPU-Enabled Molecular Dynamics Simulations
51 -- 61I. Savran, Yang Gao, Jason D. Bakos. Large-Scale Pairwise Sequence Alignments on a Large-Scale GPU Cluster
62 -- 73Grigorios Chrysos, Euripides Sotiriades, Christos Rousopoulos, K. Pramataris, Ioannis Papaefstathiou, Apostolos Dollas, Agathoklis Papadopoulos, Ioannis Kirmitzoglou, Vasilis J. Promponas, Theo Theocharides, George Petihakis, Jacques Lagnel. Reconfiguring the Bioinformatics Computational Spectrum: Challenges and Opportunities of FPGA-Based Bioinformatics Acceleration Platforms
75 -- 82Ender Yilmaz, Afsaneh Nassery, Sule Ozev. Built-In EVM Measurement With Negligible Hardware Overhead
83 -- 92Maksim Jenihhin, Anton Tsepurov, Valentin Tihhomirov, Jaan Raik, Hanno Hantson, Raimund Ubar, Gunter Bartsch, Jorge H. Meza Escobar, Heinz-Dietrich Wuttke. Automated Design Error Localization in RTL Designs
93 -- 104Frederic T. Chong, Martijn J. R. Heck, P. Ranganathan, A. A. M. Saleh, Hassan M. G. Wassel. Data Center Energy Efficiency: Improving Energy Efficiency in Data Centers Beyond Technology Scaling