| 0 | -- | 0 | Anna Gambin, Monika Heiner. Preface |
| 1 | -- | 25 | Mathieu Pagé Fortin, Simon V. Hardy. A Hybrid Petri Net Model of the Akt-Wnt-mTOR-p70S6K Signalling Network in Neurons |
| 27 | -- | 52 | Paolo Baldan, Martina Bocci, Daniele Brigolin, Nicoletta Cocco, Monika Heiner, Marta Simeoni. Petri Nets for Modelling and Analysing Trophic Networks |
| 53 | -- | 80 | Mostafa Herajy, Monika Heiner. Adaptive and Bio-semantics of Continuous Petri Nets: Choosing the Appropriate Interpretation |
| 81 | -- | 100 | Jure Bordon, Miha Moskon, Nikolaj Zimic, Miha Mraz. Semi-quantitative Modelling of Gene Regulatory Processes with Unknown Parameter Values Using Fuzzy Logic and Petri Nets |
| 101 | -- | 118 | Fei Liu, Siyuan Chen. Colored Fuzzy Petri Nets for Dealing with Genetic Regulatory Networks |
| 119 | -- | 142 | Franck Delaplace, Cinzia Di Giusto, Jean-Louis Giavitto, Hanna Klaudel, Antoine Spicher. Activity Networks with Delays an Application to Toxicity Analysis |
| 143 | -- | 165 | Dorota Formanowicz, Agnieszka Rybarczyk, Piotr Formanowicz. Factors Influencing Essential Hypertension and Cardiovascular Disease Modeled and Analyzed using Stochastic Petri Nets |
| 167 | -- | 179 | Rza Bashirov, Nimet Ilke Akçay. Stochastic Simulation-based Prediction of the Behavior of the p16-mediated Signaling Pathway |
| 181 | -- | 198 | Christian Rohr. Discrete-Time Leap Method For Stochastic Simulation |
| 199 | -- | 219 | Marek Grabowski, Grzegorz Bokota, Jacek Sroka, Andrzej M. Kierzek. Verification of Dynamic Behaviour in Qualitative Molecular Networks Describing Gene Regulation, Signalling and Whole-cell Metabolism |
| 221 | -- | 254 | Mary Ann Blätke, Christian Rohr. BioModelKit: Spatial Modelling of Complex Multiscale Molecular Biosystems Based on Modular Models |