Andrzej M. Kierzek - researchr alias

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Viewing Publication 1 - 11 from 11

2018

Verification of Dynamic Behaviour in Qualitative Molecular Networks Describing Gene Regulation, Signalling and Whole-cell MetabolismMarek Grabowski, Grzegorz Bokota, Jacek Sroka, Andrzej M. Kierzek. FUIN, 160(1-2):199-219, 2018. [doi]

Industrial applications of the PetriDotNet modelling and analysis toolKamil Kedzia, Wojtek Ptak, Jacek Sroka, Andrzej M. Kierzek. SCP, 157:3-16, 2018. [doi]

2016

AB-QSSPN: Integration of Agent-Based Simulation of Cellular Populations with Quasi-Steady State Simulation of Genome Scale Intracellular NetworksWojciech Ptak, Andrzej M. Kierzek, Jacek Sroka. apn 2016: 113-122 [doi]

2013

QSSPN: dynamic simulation of molecular interaction networks describing gene regulation, signalling and whole-cell metabolism in human cellsCiarán P. Fisher, Nicholas J. Plant, J. Bernadette Moore, Andrzej M. Kierzek. bioinformatics, 29(24):3181-3190, 2013. [doi]

2012

Equation-Free Analysis of Two-Component System Signalling Model Reveals the Emergence of Co-Existing Phenotypes in the Absence of MultistationarityRebecca B. Hoyle, Daniele Avitabile, Andrzej M. Kierzek. ploscb, 8(6), 2012. [doi]

2011

M. tuberculosisBhushan K. Bonde, Dany J. V. Beste, Emma Laing, Andrzej M. Kierzek, Johnjoe McFadden. ploscb, 7(6), 2011. [doi]

SurreyFBA: a command line tool and graphics user interface for constraint-based modeling of genome-scale metabolic reaction networksAlbert Gevorgyan, Michael E. Bushell, Claudio Avignone-Rossa, Andrzej M. Kierzek. bioinformatics, 27(3):433-434, 2011. [doi]

Taverna workbenchJacek Sroka, Lukasz Krupa, Andrzej M. Kierzek, Jerzy Tyszkiewicz. bioinformatics, 27(18):2618-2619, 2011. [doi]

Acorn: A grid computing system for constraint based modeling and visualization of the genome scale metabolic reaction networks via a web interfaceJacek Sroka, Lukasz Bieniasz-Krzywiec, Szymon Gwozdz, Dariusz Leniowski, Jakub Lacki, Mateusz Markowski, Claudio Avignone-Rossa, Michael E. Bushell, Johnjoe McFadden, Andrzej M. Kierzek. bmcbi, 12:196, 2011. [doi]

2006

XQTav: an XQuery processor for Taverna environmentJacek Sroka, Grzegorz Kaczor, Jerzy Tyszkiewicz, Andrzej M. Kierzek. bioinformatics, 22(10):1280-1281, 2006. [doi]

2002

STOCKS: STOChastic Kinetic Simulations of biochemical systems with Gillespie algorithmAndrzej M. Kierzek. bioinformatics, 18(3):470-481, 2002.

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