Journal: IJHPCA

Volume 33, Issue 6

0 -- 0Ewa Deelman, Anirban Mandal, Ming Jiang, Rizos Sakellariou. The role of machine learning in scientific workflows
0 -- 0Li Han, Valentin Le Fèvre, Louis-Claude Canon, Yves Robert, Frédéric Vivien. A generic approach to scheduling and checkpointing workflows
0 -- 0Daniel Balouek-Thomert, Eduard Gibert Renart, Ali Reza Zamani, Anthony Simonet, Manish Parashar. Towards a computing continuum: Enabling edge-to-cloud integration for data-driven workflows
0 -- 0Guillaume Aupy, Anne Benoit, Brice Goglin, Loïc Pottier, Yves Robert. Co-scheduling HPC workloads on cache-partitioned CMP platforms
0 -- 0Ana Gainaru, Hongyang Sun, Guillaume Aupy, Yuankai Huo, Bennett A. Landman, Padma Raghavan. On-the-fly scheduling versus reservation-based scheduling for unpredictable workflows
0 -- 0Guillaume Aupy, Brice Goglin, Valentin Honoré, Bruno Raffin. Modeling high-throughput applications for in situ analytics
0 -- 0Franck Cappello, Sheng Di, Sihuan Li, Xin Liang, Ali Murat Gok, Dingwen Tao, Chun Hong Yoon, Xin-Chuan Wu, Yuri Alexeev, Frederic T. Chong. Use cases of lossy compression for floating-point data in scientific data sets
0 -- 0Mark Endrei, Chao Jin, Minh Ngoc Dinh, David Abramson, Heidi Poxon, Luiz DeRose, Bronis R. de Supinski. Statistical and machine learning models for optimizing energy in parallel applications
0 -- 0Dylan Chapp, Danny Rorabaugh, Kento Sato, Dong H. Ahn, Michela Taufer. A three-phase workflow for general and expressive representations of nondeterminism in HPC applications
0 -- 0Alexandre Denis 0001, Julien Jaeger, Emmanuel Jeannot, Marc Pérache, Hugo Taboada. Study on progress threads placement and dedicated cores for overlapping MPI nonblocking collectives on manycore processor
0 -- 0Anand Venkat, Tharindu Rusira, Raj Barik, Mary W. Hall, Leonard Truong. SWIRL: High-performance many-core CPU code generation for deep neural networks
0 -- 0Thiago S. F. X. Teixeira, William Gropp, David A. Padua. Managing code transformations for better performance portability
0 -- 0Jack J. Dongarra, Bernard Tourancheau. Guest editors' note: Special issue on clusters, clouds, and data for scientific computing
0 -- 0Hartwig Anzt, Goran Flegar, Thomas Grützmacher, Enrique S. Quintana-Ortí. Toward a modular precision ecosystem for high-performance computing
0 -- 0Heike Jagode, Anthony Danalis, Hartwig Anzt, Jack J. Dongarra. PAPI software-defined events for in-depth performance analysis
0 -- 0Jungwon Kim, Jeffrey S. Vetter. Implementing efficient data compression and encryption in a persistent key-value store for HPC

Volume 33, Issue 5

0 -- 0Salil Mahajan, Katherine J. Evans, Joseph H. Kennedy, Min Xu, Matthew R. Norman, Marcia L. Branstetter. Ongoing solution reproducibility of earth system models as they progress toward exascale computing
0 -- 0David Strelák, Carlos Oscar Sánchez Sorzano, José María Carazo, Jiri Filipovic. A GPU acceleration of 3-D Fourier reconstruction in cryo-EM
0 -- 0Ibrahim Al-Kharusi, David W. Walker. Locality properties of 3D data orderings with application to parallel molecular dynamics simulations
0 -- 0Masahiro Nakao, Tetsuya Odajima, Hitoshi Murai, Akihiro Tabuchi, Norihisa Fujita, Toshihiro Hanawa, Taisuke Boku, Mitsuhisa Sato. Evaluation of XcalableACC with tightly coupled accelerators/InfiniBand hybrid communication on accelerated cluster
0 -- 0Mohammad Y. Al-Shorman, Majd M. Al-Kofahi. Ultrasonic pulse propagation simulation using OpenCL for environment mapping and discovery
0 -- 0Dominic E. Charrier, Benjamin Hazelwood, Ekaterina Tutlyaeva, Michael Bader, Michael Dumbser, Andrey Kudryavtsev, Alexander A. Moskovsky, Tobias Weinzierl. Studies on the energy and deep memory behaviour of a cache-oblivious, task-based hyperbolic PDE solver
0 -- 0Stefan Lemvig Glimberg, Allan Peter Engsig-Karup, Luke N. Olson. A massively scalable distributed multigrid framework for nonlinear marine hydrodynamics
0 -- 0Kento Sato, Ignacio Laguna, Gregory L. Lee, Martin Schulz 0001, Christopher M. Chambreau, Simone Atzeni, Michael Bentley, Ganesh Gopalakrishnan, Zvonimir Rakamaric, Geof Sawaya, Joachim Protze, Dong H. Ahn. Pruners
0 -- 0Pierre Fortin, Maxime Touche. N-body simulations
0 -- 0Nikola Tchipev, Steffen Seckler, Matthias Heinen, Jadran Vrabec, Fabio Alexander Gratl, Martin Horsch, Martin Bernreuther, Colin W. Glass, Christoph Niethammer, Nicolay Hammer, Bernd Krischok, Michael Resch, Dieter Kranzlmüller, Hans Hasse, Hans-Joachim Bungartz, Philipp Neumann. TweTriS: Twenty trillion-atom simulation
0 -- 0John M. Dennis, Brian Dobbins, Christopher Kerr, Youngsung Kim. Optimizing the HOMME dynamical core for multicore platforms
0 -- 0Jorge Ejarque, Marc Domínguez, Rosa M. Badia. A hierarchic task-based programming model for distributed heterogeneous computing
0 -- 0Roman Iakymchuk, Stef Graillat, David Defour, Enrique S. Quintana-Ortí. Hierarchical approach for deriving a reproducible unblocked LU factorization
0 -- 0Michael Mascagni. IJHPCA
0 -- 0Andrew C. Kirby, Michael J. Brazell, Zhi Yang, Rajib Roy, Behzad R. Ahrabi, Michael K. Stoellinger, Jayanarayanan Sitaraman, Dimitri J. Mavriplis. hp-adaptive approach with blade-resolved turbine models
0 -- 0Milos R. Ivanovic, Ana M. Kaplarevic-Malisic, Boban S. Stojanovic, Marina R. Svicevic, Srboljub M. Mijailovich. Machine learned domain decomposition scheme applied to parallel multi-scale muscle simulation
0 -- 0Katharina Kormann, Klaus Reuter, Markus Rampp. A massively parallel semi-Lagrangian solver for the six-dimensional Vlasov-Poisson equation
0 -- 0Ichitaro Yamazaki, Akihiro Ida, Rio Yokota, Jack J. Dongarra. Distributed-memory lattice H-matrix factorization
0 -- 0Markus Huber 0004, Ulrich Rüde, Barbara I. Wohlmuth. Adaptive control in roll-forward recovery for extreme scale multigrid
0 -- 0Line Pouchard, Sterling Baldwin, Todd Elsethagen, Shantenu Jha, Bibi Raju, Eric G. Stephan, Li Tang, Kerstin Kleese van Dam. Computational reproducibility of scientific workflows at extreme scales
0 -- 0Sergio Iserte, Héctor Martínez, Sergio Barrachina, Maribel Castillo, Rafael Mayo, Antonio J. Peña. Dynamic reconfiguration of noniterative scientific applications: A case study with HPG aligner

Volume 33, Issue 4

0 -- 0Samuel Elliott, Raghu Raj Prasanna Kumar, Natasha Flyer, Tuan Ta, Richard Loft. Implementation of a scalable, performance portable shallow water equation solver using radial basis function-generated finite difference methods
0 -- 0Domenico Rea, Giansimone Perrino, Diego di Bernardo, Livia Marcellino, Diego Romano. A GPU algorithm for tracking yeast cells in phase-contrast microscopy images
0 -- 0Nils Kohl, Johannes Hötzer, Florian Schornbaum, Martin Bauer 0003, Christian Godenschwager, Harald Köstler, Britta Nestler, Ulrich Rüde. A scalable and extensible checkpointing scheme for massively parallel simulations
0 -- 0Lubomir Riha, Michal Merta, Radim Vavrík, Tomás Brzobohatý, Alexandros Markopoulos, Ondrej Meca, Ondrej Vysocky, Tomás Kozubek, Vít Vondrák. A massively parallel and memory-efficient FEM toolbox with a hybrid total FETI solver with accelerator support
0 -- 0Karl-Robert Wichmann, Martin Kronbichler 0002, Rainald Löhner, Wolfgang A. Wall. Practical applicability of optimizations and performance models to complex stencil-based loop kernels in CFD
0 -- 0Thomas Heller, Bryce Adelstein-Lelbach, Kevin A. Huck, John Biddiscombe, Patricia Grubel, Alice E. Koniges, Matthias Kretz, Dominic Marcello, David Pfander, Adrian Serio, Frank J. Seinstra, Geoffrey C. Clayton, Dirk Pflüger, David Eder, Hartmut Kaiser. Harnessing billions of tasks for a scalable portable hydrodynamic simulation of the merger of two stars
0 -- 0Vaibhav Sundriyal, Kristopher Keipert, Masha Sosonkina, Mark S. Gordon. Effect of frequency scaling granularity on energy-saving strategies
0 -- 0Kasia Swirydowicz, Noel Chalmers, Ali Karakus, Tim Warburton. Acceleration of tensor-product operations for high-order finite element methods
0 -- 0Niclas Jansson, Rahul Bale, Keiji Onishi, Makoto Tsubokura. CUBE: A scalable framework for large-scale industrial simulations
0 -- 0Hector Emilio Barrios Molano, Kamy Sepehrnoori. Development of a framework for parallel reservoir simulation
0 -- 0Andrea Borghesi, Andrea Bartolini, Michela Milano, Luca Benini. Pricing schemes for energy-efficient HPC systems: Design and exploration

Volume 33, Issue 3

0 -- 0Anderson Braga de Avila, Renata Hax Sander Reiser, Maurício Lima Pilla, Adenauer Corrêa Yamin. Improving in situ GPU simulation of quantum computing in the D-GM environment
0 -- 0Gabriele Mencagli, Felipe M. G. França, Cristiana Bentes Seidel, Leandro A. J. Marzulo, Maurício Lima Pilla. in-situ computing on the next-generation computing platforms
0 -- 0Joao Vicente Ferreira Lima, Issam Raïs, Laurent Lefèvre, Thierry Gautier. Performance and energy analysis of OpenMP runtime systems with dense linear algebra algorithms
0 -- 0Matheus da Silva Serpa, Eduardo H. M. Cruz, Matthias Diener, Arthur M. Krause, Philippe O. A. Navaux, Jairo Panetta, Albert Farrés, Claudia Rosas, Mauricio Hanzich. Optimization strategies for geophysics models on manycore systems
0 -- 0Jucele Franca de Alencar Vasconcellos, Edson Norberto Cáceres, Henrique Mongelli, Siang Wun Song, Frank Dehne, Jayme Luiz Szwarcfiter. New BSP/CGM algorithms for spanning trees
0 -- 0Lukasz Szustak, Pawel Bratek. Performance portable parallel programming of heterogeneous stencils across shared-memory platforms with modern Intel processors
0 -- 0Christian Simmendinger, Roman Iakymchuk, Luis Cebamanos, Dana Akhmetova, Valeria Bartsch, Tiberiu Rotaru, Mirko Rahn, Erwin Laure, Stefano Markidis. Interoperability strategies for GASPI and MPI in large-scale scientific applications
0 -- 0Adrian Klusek, Marcin Los, Maciej Paszynski, Witold Dzwinel. Efficient model of tumor dynamics simulated in multi-GPU environment
0 -- 0Roman Wyrzykowski, Ewa Deelman. Guest editor's note: Special issue on challenges and solutions for porting applications to emerging high performance computing systems
0 -- 0Vladimir V. Stegailov, Ekaterina Dlinnova, Timur Z. Ismagilov, Mikhail Khalilov, Nikolay Kondratyuk, Dmitry Makagon, Alexander Semenov, Alexei Simonov, Grigory S. Smirnov, Alexey Timofeev. Angara interconnect makes GPU-based Desmos supercomputer an efficient tool for molecular dynamics calculations
0 -- 0Daniel Langr, Tomás Dytrych, Kristina D. Launey, Jerry P. Draayer. Accelerating many-nucleon basis generation for high performance computing enabled ab initio nuclear structure studies

Volume 33, Issue 2

0 -- 0Marc Casas, Wilfried N. Gansterer, Elias Wimmer. Resilient gossip-inspired all-reduce algorithms for high-performance computing: Potential, limitations, and open questions
0 -- 0Hasan Metin Aktulga, Chris Knight, Paul K. Coffman, Kurt A. O'Hearn, Tzu-Ray Shan, Wei Jiang. Optimizing the performance of reactive molecular dynamics simulations for many-core architectures
0 -- 0Daniel S. Abdi, Francis X. Giraldo, Emil M. Constantinescu, Lester E. Carr, Lucas C. Wilcox, Timothy C. Warburton. Acceleration of the IMplicit-EXplicit nonhydrostatic unified model of the atmosphere on manycore processors
0 -- 0Dingwen Tao, Sheng Di, Hanqi Guo, Zizhong Chen, Franck Cappello. Z-checker: A framework for assessing lossy compression of scientific data
0 -- 0Andreas Müller 0010, Michal A. Kopera, Simone Marras, Lucas C. Wilcox, Tobin Isaac, Francis X. Giraldo. Strong scaling for numerical weather prediction at petascale with the atmospheric model NUMA
0 -- 0Anshu Dubey, Petros Tzeferacos, Don Q. Lamb. The dividends of investing in computational software design: A case study
0 -- 0Katherine J. Evans, Richard K. Archibald, David J. Gardner, Matthew R. Norman, Mark A. Taylor, Carol S. Woodward, Patrick H. Worley. Performance analysis of fully explicit and fully implicit solvers within a spectral element shallow-water atmosphere model
0 -- 0Carlos Teijeiro, Thomas Hammerschmidt, Ralf Drautz, Godehard Sutmann. Optimized parallel simulations of analytic bond-order potentials on hybrid shared/distributed memory with MPI and OpenMP
0 -- 0Jon Calhoun, Franck Cappello, Luke N. Olson, Marc Snir, William D. Gropp. Exploring the feasibility of lossy compression for PDE simulations
0 -- 0Elmar Peise, Paolo Bientinesi. The ELAPS framework: Experimental Linear Algebra Performance Studies
0 -- 0Pietro Cicotti, Manu Shantharam, Laura Carrington. Reducing communication in parallel graph search algorithms with software caches
0 -- 0Irina Demeshko, Jerry Watkins, Irina K. Tezaur, Oksana Guba, William F. Spotz, Andrew G. Salinger, Roger P. Pawlowski, Michael A. Heroux. Toward performance portability of the Albany finite element analysis code using the Kokkos library

Volume 33, Issue 1

0 -- 0Vladimir Mironov, Alexander Moskovsky, Michael D'mello, Yuri Alexeev. An efficient MPI/OpenMP parallelization of the Hartree-Fock-Roothaan method for the first generation of Intel® Xeon Phi™ processor architecture
0 -- 0Tadashi Yamazaki, Jun Igarashi, Junichiro Makino, Toshikazu Ebisuzaki. Real-time simulation of a cat-scale artificial cerebellum on PEZY-SC processors
0 -- 0Franz Pichler, Gundolf Haase. Finite element method completely implemented for graphic processor units using parallel algorithm libraries
0 -- 0Enrico Calore, Alessandro Gabbana, Sebastiano Fabio Schifano, Raffaele Tripiccione. Optimization of lattice Boltzmann simulations on heterogeneous computers
0 -- 0Bei Wang, Stéphane Ethier, William M. Tang, Khaled Z. Ibrahim, Kamesh Madduri, Samuel Williams, Leonid Oliker. Modern gyrokinetic particle-in-cell simulation of fusion plasmas on top supercomputers
0 -- 0John Loffeld, Jeffrey Hittinger. On the arithmetic intensity of high-order finite-volume discretizations for hyperbolic systems of conservation laws
0 -- 0Linda Stals. Algorithm-based fault recovery of adaptively refined parallel multilevel grids
0 -- 0Muhammed Nufail Farooqi, Daulet Izbassarov, Metin Muradoglu, Didem Unat. Communication analysis and optimization of 3D front tracking method for multiphase flow simulations
0 -- 0Daniel S. Abdi, Lucas C. Wilcox, Timothy C. Warburton, Francis X. Giraldo. A GPU-accelerated continuous and discontinuous Galerkin non-hydrostatic atmospheric model
0 -- 0Hugues Digonnet, Thierry Coupez, Patrice Laure, Luisa Silva. Massively parallel anisotropic mesh adaptation
0 -- 0Masahiro Nakao, Hitoshi Murai, Hidetoshi Iwashita, Taisuke Boku, Mitsuhisa Sato. Implementation and evaluation of the HPC challenge benchmark in the XcalableMP PGAS language
0 -- 0Jan Hückelheim, Paul D. Hovland, Michelle Mills Strout, Jens-Dominik Müller. Reverse-mode algorithmic differentiation of an OpenMP-parallel compressible flow solver