| 329 | -- | 330 | Harvey J. Greenberg. From the Guest Editor for the Special Issue on Computational Molecular Biology/Bioinformatics |
| 331 | -- | 340 | David S. H. Chew, Kwok Pui Choi, Hans Heidner, Ming-Ying Leung. Palindromes in SARS and Other Coronaviruses |
| 341 | -- | 347 | Yonil Park, John L. Spouge. Searching for Multiple Words in a Markov Sequence |
| 348 | -- | 359 | Giuseppe Lancia, Maria Cristina Pinotti, Romeo Rizzi. Haplotyping Populations by Pure Parsimony: Complexity of Exact and Approximation Algorithms |
| 360 | -- | 370 | Gad Kimmel, Roded Sharan, Ron Shamir. Computational Problems in Noisy SNP and Haplotype Analysis: Block Scores, Block Identification, and Population Stratification |
| 371 | -- | 379 | Jonathan P. K. Doye, Robert H. Leary, Marco Locatelli, Fabio Schoen. Global Optimization of Morse Clusters by Potential Energy Transformations |
| 380 | -- | 392 | Bernard Chazelle, Carl Kingsford, Mona Singh. A Semidefinite Programming Approach to Side Chain Positioning with New Rounding Strategies |
| 393 | -- | 405 | Rumen Andonov, Stefan Balev, Nicola Yanev. Protein Threading: From Mathematical Models to Parallel Implementations |
| 406 | -- | 418 | Genetha Anne Gray, Tamara G. Kolda, Ken Sale, Malin M. Young. Optimizing an Empirical Scoring Function for Transmembrane Protein Structure Determination |
| 419 | -- | 429 | Cláudio Nogueira de Meneses, Zhaosong Lu, Carlos A. S. Oliveira, Panos M. Pardalos. Optimal Solutions for the Closest-String Problem via Integer Programming |
| 430 | -- | 440 | Winfried Just, Gianluca Della Vedova. Multiple Sequence Alignment as a Facility-Location Problem |
| 441 | -- | 458 | Abdullah N. Arslan, Ömer Egecioglu. Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints |
| 459 | -- | 469 | Dan Gusfield, Satish Eddhu, Charles H. Langley. The Fine Structure of Galls in Phylogenetic Networks |
| 470 | -- | 485 | Courtney Stanton, J. MacGregor Smith. Steiner Trees and 3-D Macromolecular Conformation |
| 486 | -- | 489 | W. David Kelton. Appreciation to Referees |