Abdullah N. Arslan - researchr alias

researchr

You are not signed in
Sign in
Sign up

Viewing Publication 1 - 42 from 42

2021

RNA Secondary Structure Database, Analysis Tool-Set, and Case-Study Results on SARS-CoV-2Abdullah N. Arslan, Mutlu Mete, Anjali Kumari. bibm 2021: 2471-2478 [doi]

2018

A fast algorithm for all-pairs Hamming distancesAbdullah N. Arslan. ipl, 139:49-52, 2018. [doi]

Dynamic and Fractional Programming Based Approximation Algorithms for Sequence Alignment with ConstraintsAbdullah N. Arslan, Ömer Egecioglu. In Teofilo F. Gonzalez, editor, Handbook of Approximation Algorithms and Metaheuristics, Second Edition, Volume 2: Contemporary and Emerging Applications. Chapman and Hall/CRC, 2018.

RNA secondary structure graphical rendering libraryKeith A. Monschke, Abdullah N. Arslan. cibcb 2018: 1-6 [doi]

2017

Efficient RNA structure comparison algorithmsAbdullah N. Arslan, Jithendar Anandan, Eric Fry, Keith Monschke, Nitin Ganneboina, Jason Bowerman. jbcb, 15(6):1-27, 2017. [doi]

Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change PointsAbdullah N. Arslan, Nikolay Metodiev Sirakov. iwcia 2017: 308-321 [doi]

2015

Fast Algorithms for Local Similarity Queries in Two SequencesAbdullah N. Arslan. ijfcs, 26(5):625-642, 2015. [doi]

New algorithms for pattern matching with wildcards and length constraintsAbdullah N. Arslan, Betsy George, Kirsten Stor. dmaa, 7(3), 2015. [doi]

Pattern matching with wildcards and length constraints using maximum network flowAbdullah N. Arslan, Dan He, Yu He, Xindong Wu. jda, 35:9-16, 2015. [doi]

2013

PMBC: Pattern mining from biological sequences with wildcard constraintsXindong Wu, Xingquan Zhu, Yu He, Abdullah N. Arslan. cbm, 43(5):481-492, 2013. [doi]

2012

Weapon ontology annotation using boundary describing sequencesAbdullah N. Arslan, Nikolay Metodiev Sirakov, Salvatore Attardo. ssiai 2012: 101-104 [doi]

2010

A Fast Longest Common Subsequence Algorithm for Similar StringsAbdullah N. Arslan. LATA 2010: 82-93 [doi]

An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and ColumnsAbdullah N. Arslan, Arvind Chidri. csc 2010: 147-152

2008

An algorithm with linear expected running time for string editing with substitutions and substring reversalsAbdullah N. Arslan. ipl, 106(5):213-218, 2008. [doi]

2007

2006

Efficient Approximate Dictionary Look-Up for Long Words over Small AlphabetsAbdullah N. Arslan. latin 2006: 118-129 [doi]

An algorithm for string edit distance allowing substring reversalsAbdullah N. Arslan. bibe 2006: 220-226

An improved algorithm for the regular expression constrained multiple sequence alignment problemAbdullah N. Arslan, Dan He. bibe 2006: 121-126

Efficient string matching with wildcards and length constraintsGong Chen, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan, Yu He. kais, 10(4):399-419, 2006. [doi]

A Fast Algorithm for the Constrained Multiple Sequence Alignment ProblemDan He, Abdullah N. Arslan, Alan C. H. Ling. actaC, 17(4):701-717, 2006. [doi]

A* Algorithms for the Constrained Multiple Sequence Alignment ProblemDan He, Abdullah N. Arslan. icai 2006: 479-485

FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment ProblemDan He, Abdullah N. Arslan. fcs 2006: 88-94

Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment ProblemDan He, Abdullah N. Arslan. psb 2006: 10-16

Fast Motif Search in Protein Sequence DatabasesElena Zheleva, Abdullah N. Arslan. csr 2006: 670-681 [doi]

2005

Regular Expression Constrained Sequence AlignmentAbdullah N. Arslan. cpm 2005: 322-333 [doi]

Algorithms For The Constrained Longest Common Subsequence ProblemsAbdullah N. Arslan, Ömer Egecioglu. ijfcs, 16(6):1099-1109, 2005. [doi]

A Parallel Algorithm for the Constrained Multiple Sequence Alignment ProblemDan He, Abdullah N. Arslan. bibe 2005: 258-262 [doi]

2004

Dictionary Look-Up Within Small Edit DistanceAbdullah N. Arslan, Ömer Egecioglu. ijfcs, 15(1):57-71, 2004. [doi]

Dynamic Programming Based Approximation Algorithms for Sequence Alignment with ConstraintsAbdullah N. Arslan, Ömer Egecioglu. informs, 16(4):441-458, 2004. [doi]

Algorithms for the Constrained Longest Common Subsequence ProblemsAbdullah N. Arslan, Ömer Egecioglu. stringology 2004: 24-32 [doi]

2002

2001

A new approach to sequence comparison: normalized sequence alignmentAbdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner. bioinformatics, 17(4):327-337, 2001.

A new approach to sequence comparison: normalized sequence alignmentAbdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner. recomb 2001: 2-11 [doi]

An Improved Upper Bound on the Size of Planar Convex-HullsAbdullah N. Arslan, Ömer Egecioglu. cocoon 2001: 111-120 [doi]

1999

An Efficient Uniform-Cost Normalized Edit Distance AlgorithmAbdullah N. Arslan, Ömer Egecioglu. spire 1999: 8-15 [doi]

Sign in or sign up to see more results.

runs on WebDSL