Abstract is missing.
- Intrinsically Disordered Proteins: Predictions and ApplicationsA. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky. 1 [doi]
- Stochasticity and Networks in Genomic DataJohn Quackenbush. 2 [doi]
- Decoding Novel Genomes: From Microbiomes to the EukaryotaMark Borodovsky. 3 [doi]
- Promoter studies in the human genome: one perspective on an unfinished storyMary Qu Yang, Laura Elnitski. 4-6 [doi]
- Protein Structure Prediction and Its Understanding Based on Machine Learning MethodsYi Pan. 7 [doi]
- Statistial Analysis of nucleosome occupancy and histone modification dataGuo-Cheng Yuan, Jun S. Liu. 8 [doi]
- An Investigation into the Feasibility of Detecting Microscopic Disease Using Machine LearningMary Qu Yang, Jack Y. Yang. 9-10 [doi]
- Nanobioinformatics: The Enabling Technology of Personalized MedicineLinda K. Molnar. 11 [doi]
- Intrinsically Disordered Proteins in Human DiseasesVladimir N. Uversky, Christopher J. Oldfield, A. Keith Dunker. 12 [doi]
- Metallobiochemistry of Alzheimer s Disease and Its Theranostic Agent DevelopmentXudong Huang. 13 [doi]
- Identification of Conserved Domain Combinations in S.cerevisiae ProteinsSuk Hoon Jung, Hee-Young Hur, Desok Kim, Dong-Soo Han. 14-20 [doi]
- Multiclass Fuzzy Clustering Support Vector Machines for Protein Local Structure PredictionWei Zhong, Jieyue He, Yi Pan. 21-26 [doi]
- A New Alignment-Independent Algorithm for Clustering Protein SequencesAbdellali Kelil, Shengrui Wang, Ryszard Brzezinski. 27-34 [doi]
- Metropolis-Hastings Algorithm and Continuous Regression for finding Next-State Models of Protein Modification using Information ScoresDavid J. John, Jacquelyn S. Fetrow, James L. Norris. 35-41 [doi]
- Protein function prediction from interaction networks using a random walk ranking algorithmValerio Freschi. 42-48 [doi]
- Intrinsically Disordered Proteins: An UpdateA. Keith Dunker, Christopher J. Oldfield, Jingwei Meng, Pedro Romero, Jack Y. Yang, Zoran Obradovic, Vladimir N. Uversky. 49-58 [doi]
- Linking Protein Mass with Function via Organismal Massome NetworksGil Alterovitz, Eugenia Lyashenko, Michael Xiang, Marco Ramoni. 59-65 [doi]
- Ensemble of Probabilistic Neural Networks for Protein Fold RecognitionYuehui Chen, Xueqin Zhang, Mary Qu Yang, Jack Y. Yang. 66-70 [doi]
- HICCUP: Hierarchical Clustering Based Value Imputation using Heterogeneous Gene Expression Microarray DatasetsQiankun Zhao, Prasenjit Mitra, Dongwon Lee, Jaewoo Kang. 71-78 [doi]
- On the Effectiveness of Constraints Sets in Clustering GenesErliang Zeng, Chengyong Yang, Tao Li, Giri Narasimhan. 79-86 [doi]
- Integrate Qualitative Biological Knowledge to Build Gene Networks by Parallel Dynamic Bayesian Network Structure LearningSong Li. 87-92 [doi]
- Finding Clusters of Positive and Negative Coregulated Genes in Gene Expression DataKerstin Koch, Stefan Schönauer, Ivy Jansen, Jan Van den Bussche, Tomasz Burzykowski. 93-99 [doi]
- Pattern Cores And Connectedness in Cancer Gene ExpressionNoha A. Yousri, Mohamed S. Kamel, Mohamed A. Ismail. 100-107 [doi]
- PANP - a New Method of Gene Detection on Oligonucleotide Expression ArraysPeter Warren, Deanne Taylor, Paolo G. V. Martini, Jennifer Jackson, Jadwiga R. Bienkowska. 108-115 [doi]
- Cooperative Partitional-Divisive Clustering and Its Application in Gene Expression AnalysisRasha Kashef, Mohamed S. Kamel. 116-122 [doi]
- On the Design of Oligos for Gene SynthesisChris Thachuk, Anne Condon. 123-130 [doi]
- Evidence for Proximal to Distal Appendage Amputation Site Effects from Global Gene Expression Correlations Found in Newt MicroarraysKenneth A. Marx, John Sharko, Georges G. Grinstein, Shannon Odelberg, Hans-Georg Simon. 131-136 [doi]
- Denoising of Array-Based DNA Copy Number Data Using The Dual-tree Complex Wavelet TransformNha Nguyen, Heng Huang, Soontorn Oraintara, Yuhang Wang. 137-144 [doi]
- Quality Assessment of Affymetrix GeneChip Data using the EM Algorithm and a Naive Bayes ClassifierBrian E. Howard, Beate Sick, Imara Perera, Yang Ju Im, Heike Winter-Sederoff, Steffen Heber. 145-150 [doi]
- Comparing Cancer and Normal Gene Regulatory Networks Based on Microarray Data and Transcription Factor AnalysisYu-Chun Lin, Hsiang-Yuan Yeh, Shih-Wu Cheng, Von-Wun Soo. 151-157 [doi]
- Finding Cancer-Related Gene Combinations Using a Molecular Evolutionary AlgorithmChan-Hoon Park, Soo-Jin Kim, Sun Kim, Dong-Yeon Cho, Byoung-Tak Zhang. 158-163 [doi]
- A Two-Stage Gene Selection Algorithm by Combining ReliefF and mRMRYi Zhang, Chris H. Q. Ding, Tao Li. 164-171 [doi]
- Estimating Classification Error to Identify Biomarkers in Time Series Expression DataJohn H. Phan, May D. Wang. 172-179 [doi]
- Detection and Prediction of Alternative Splicing within Acceptor/Donor Sites in pre-mRNA of Arabidopsis thalianaMinseo Park, Deane L. Falcone, Kil-Young Yun, Karen M. Daniels. 180-186 [doi]
- An Effective Interwoven Loop Design Application for Two-Channel Microarray ExperimentsMehdi Pirooznia, Arun Rawat, Jack Y. Yang, Mary Qu Yang, Ping Gong, Edward J. Perkins, Youping Deng. 187-191 [doi]
- SNPMiner: A Domain-Specific Deep Web Mining ToolFan Wang, Gagan Agrawal, Ruoming Jin, Helen Piontkivska. 192-199 [doi]
- Fast and Robust Detection of Epilepsy in Noisy EEG Signals Using Permutation EntropyIman Veisi, Naser Pariz, Ali Karimpour. 200-203 [doi]
- A Robotic System for Real-time Tumor Manipulation During Image guided Breast BiopsyVishnu Mallapragada, Nilanjan Sarkar, Tarun Kanti Podder. 204-210 [doi]
- Morphometric Analysis of Hippocampal Shape in Mild Cognitive Impairment: An Imaging Genetics StudyLi Shen, Andrew J. Saykin, Moo K. Chung, Heng Huang. 211-217 [doi]
- A Compartmentalized Approach to the Assembly of Physical MapsSerdar Bozdag, Timothy J. Close, Stefano Lonardi. 218-225 [doi]
- Graph Theory Application in Cell Nuleus Segmentation, Tracking and IdentificationLelin Zhang, Hongkai Xiong, Kai Zhang, Xiaobo Zhou. 226-232 [doi]
- An End-to-End Process for Cancer Identification from Images of Lung TissueWalker H. Land Jr., Dan McKee, Tatyana Zhukov, Dansheng Song, Wei Qian. 233-239 [doi]
- Rat Mammary Fat Pad Segmentation and Growth Rate Evaluation in T1 Weighted MR ImagesBin Wang, Jianhua Xuan, Matthew T. Freedman, Peter G. Shields, Yue Wang. 240-245 [doi]
- A Simulation-Based 3D Axon Axis Extraction in Confocal Fluorescence Microscopy ImagesKai Zhang, Hongkai Xiong, Xiaobo Zhou. 246-250 [doi]
- Advancements in Automated Diagnostic MammographyWalker H. Land Jr., Alda Mizaku, Thomas Raway, John J. Heine, Claudia Berman, Nataliya Kovalchuk. 251-256 [doi]
- Calcium De-blooming in Coronary CT ImageZhuangli Liang, W. Clem Karl, Synho Do, Udo Hoffmann, Thomas Brady, Homer H. Pien. 257-262 [doi]
- Distance Preserving Dimension Reduction Using the QR Factorization or the Cholesky FactorizationHyunsoo Kim, Haesun Park, Hongyuan Zha. 263-269 [doi]
- Discrete Methods for Association Search and Status Prediction in Genotype Case-Control StudiesDumitru Brinza, Alexander Zelikovsky. 270-277 [doi]
- A Multi-Objective Genetic Algorithm that Employs a Hybrid Approach for Isolating Codon Usage Bias Indicative of Translational EfficiencyDouglas W. Raiford, Dan E. Krane, Travis E. Doom, Michael L. Raymer. 278-285 [doi]
- Rapid Detection and Classification of Bacterial Contamination Using Grid ComputingWamiq Manzoor Ahmed, Bulent Bayraktar, Arun K. Bhunia, E. Daniel Hirleman, J. Paul Robinson, Bartek Rajwa. 286-293 [doi]
- Sensitivity Analysis of Biomolecular Simulations using Symbolic ModelsSadaf R. Alam, Nikhil Bhatia, Jeffrey S. Vetter. 294-300 [doi]
- Detecting and Assessing Conserved Stems for Accurate Structural Alignment of RNA SequencesXiaoyong Fang, Zhigang Luo, Bo Yuan, Zhenghua Wang. 301-306 [doi]
- The RNA String Kernel for siRNA Efficacy PredictionShibin Qiu, Terran Lane. 307-314 [doi]
- A Machine Learning Approach for Prediction of Lipid-Interacting Residues in Amino Acid SequencesStephanie Jimenez Irausquin, Liangjiang Wang. 315-319 [doi]
- Assessing the Performance of Macromolecular Sequence ClassifiersCornelia Caragea, Jivko Sinapov, Vasant Honavar, Drena Dobbs. 320-326 [doi]
- Shortest Path Approaches for the Longest Common Subsequence of a Set of StringsMarina Barsky, Ulrike Stege, Alex Thomo, Chris Upton. 327-333 [doi]
- Constrained RNA Structural Alignment: Algorithms and Application to Motif Detection in the Untranslated Regions of Trypanosoma brucei mRNAsMugdha Khaladkar, Vivian Bellofatto, Jason Tsong-Li Wang, Vandanaben Patel, Marvin K. Nakayama. 334-341 [doi]
- Optimizing Flow-based Modularization by Iterative Centroid Search in Protein Interaction NetworksYoung-Rae Cho, Woochang Hwang, Aidong Zhang. 342-349 [doi]
- Homomorphisms of Multisource Trees into Networks with Applications to Metabolic PathwaysQiong Cheng, Robert W. Harrison, Alexander Zelikovsky. 350-357 [doi]
- Review of Systems Biology Simulation Tools for Translational ResearchMelissa Freedenberg, Chanchala Kaddi, Chang F. Quo, May D. Wang. 358-365 [doi]
- Combined expression data with missing values and gene interaction network analysis: a Markovian integrated approachJuliette Blanchet, Matthieu Vignes. 366-373 [doi]
- A Systematic Approach to Quantifying Evolutionary Functional Trends Across the Universal Tree of LifeGil Alterovitz, Taro Muso, Paresh Malalur, Marco Ramoni. 374-378 [doi]
- Super Granular Shrink-SVM Feature Elimination (Super GS-SVM-FE) Model for Protein Sequence Motif Information ExtractionBernard Chen, Stephen Pellicer, Phang C. Tai, Robert W. Harrison, Yi Pan. 379-386 [doi]
- False Discovery Rates in Identifying Functional DNA MotifsOsman Abul, Geir Kjetil Sandve, Finn Drabløs. 387-394 [doi]
- A Geometrical Model for the SNP Motif Identification ProblemGaofeng Huang, Peter Jeavons. 395-402 [doi]
- A Hierarchical Grow-and-Match Algorithm for Backbone Resonance Assignments Given 3D StructureFei Xiong, Chris Bailey-Kellogg. 403-410 [doi]
- A Flexible Stem-Based Local Search Algorithm for Predicting RNA Secondary Structures Including PseudoknotsXiang Chen, Simin He, Dong-Bo Bu, Runsheng Chen, Wen Gao. 411-417 [doi]
- Mining Conserved Structures of Enzymes from Functional Hierarchical ClassificationYu-Feng Huang, Yu-Shin Lin, Tian-Wei Hsu, Chien-Kang Huang. 418-424 [doi]
- Database Approaches and Data Representation in Structural BioinformaticsKreshna Gopal, James C. Sacchettini, Thomas R. Ioerger. 425-432 [doi]
- Identifying Genomic Regulators of Set-Wise Co-ExpressionJung Hoon Woo, Tian Zheng, Ju Han Kim. 433-439 [doi]
- Tracing Lineage in Multi-version Scientific DatabasesMingwu Zhang, Daisuke Kihara, Sunil Prabhakar. 440-447 [doi]
- Resolving Scientific Service Interoperability With Schema MappingNadia Yacoubi Ayadi, Zoé Lacroix. 448-455 [doi]
- A Machine Learning Approach to Pharmacological Profiling of the Quinone Scaffold in the NCI Database: A Compound Class Enriched in Those Effective Against Melanoma and Leukemia Cell LinesM. L. Ujwal, Patrick Hoffman, Kenneth A. Marx. 456-463 [doi]
- Biomarker Selection for Predicting Alzheimer Disease Using High-Resolution MALDI-TOF DataJung Hun Oh, Young Bun Kim, Prem Gurnani, Kevin P. Rosenblatt, Jean Gao. 464-471 [doi]
- Multivariate Analysis of Imaging Mass Spectrometry DataE. R. Muir, I. J. Ndiour, N. A. LeGoasduff, Richard A. Moffitt, Y. Liu, M. Cameron Sullards, Alfred H. Merrill, Y. Chen, May D. Wang. 472-479 [doi]
- Phagocyte Transmigration Modeling Using System Dynamic ControlsJiaxing Xue, Jean Gao, Liping Tang. 480-485 [doi]
- Toward a Nanobioinformatics Infrastructure for Nanotechnology-based Prostate Cancer Therapeutic Response TrackingDavid S. Paik. 486 [doi]
- A Novel Approach for Signal Transduction Networks Simulation at a Mesoscopic LevelChenxi Shao, Hongli Deng. 487-494 [doi]
- Microtubule Dynamics Classification Using a Statistical Model of the Movement of Outer TipsChristopher Alberti, Jean-Philippe Villaréal, Delano Billingsley, Koon Yin Kong, Adam I. Marcus, Paraskevi Giannakakou, May D. Wang. 495-502 [doi]
- Computer Aided Histopathological Classification of Cancer SubtypesSohaib Waheed, Richard A. Moffitt, Qaiser Chaudry, Andrew N. Young, May D. Wang. 503-508 [doi]
- Evolving Biological Behavior in Gene-Based Cellular SimulationsJohn H. Phan, Richard A. Moffitt, Todd H. Stokes, May D. Wang. 509-516 [doi]
- Engineering Multifunctional Biologically-Amenable Nanomaterials for Interfacial Therapeutic Delivery and Substrate-Based Cellular InterrogationMark Chen, Brian Huang, Eric Shin, Erik Robinson, Erik Pierstorff, Houjin Huang, Dean Ho. 517-523 [doi]
- Non-Monotonic Radio-Sensitivity over Tumor Volumes on Adjuvant Radio Therapy A New Insight on Cell Killing and ModelingJack Y. Yang, Andrzej Niemierko, Mary Qu Yang, Youping Deng. 524-531 [doi]
- Novel Materials for the Direct Removal of Water and Ions from the Body for Patients with Dialysis NeedsLisa Furby, Ravinder Gupta, Ajay Mahajan, Jarlen Don, Tsuchin Chu, Bakul Dave, Brad Schwartz. 532-537 [doi]
- A Robust Method for Generating Discriminative Gene ClustersMin Xu, Louxin Zhang, Pei Li Joe Zhou. 538-545 [doi]
- Biological Mechanism on a Chip: Modeling and Realization of Growth Hormone Secretion MechanismJohn R. Shell, Yonglian Wang, Nazeih M. Botros. 546-552 [doi]
- Retrieval Analysis of a Cementless Modular Total Hip Arthroplasty ProsthesisManish Paliwal, D. Gordon Allan, Peter Filip. 553-558 [doi]
- Trabecular Metal Patella Implanted into Soft-Tissue in a Post-Patellectomized Knee A Case ReportD. Gordon Allan, Manish Paliwal, Peter Filip. 559-562 [doi]
- A comparison between traditional shift-and-add (SAA) and point-by-point back projection (BP) -- relevance to morphology of microcalcifications for isocentric motion in Digital Breast tomosynthesis (DBT)Ying Chen, Joseph Y. Lo, James T. Dobbins. 563-569 [doi]
- Methodology for Evaluating DNA Pattern Searching Algorithms on MultiprocessorBenfano Soewito, Ning Weng. 570-577 [doi]
- An Efficient Compression Method for Multiplanar Reformulated Biomedical ImagesQiang Cheng, Mehdi Zargham. 578-584 [doi]
- A Computational Approach to Understand Arabidopsis thaliana and Soybean Resistance to Fusarium solani (Fsg)Jiazheng Yuan, Mengxia Zhu, M. Javed Iqbal, Jack Y. Yang, David A. Lightfoot. 585-592 [doi]
- Biostatistical Considerations of the Use of Genomic DNA Reference in MicroarraysYunfeng Yang, Michelle M. Zhu, Liyou Wu, Jizhong Zhou. 593-600 [doi]
- Dynamic Load Balancing for Mining of Molecular Structures using Genetic AlgorithmSalahuddin Mohammad Masum, Mohammed Yeasin. 601-608 [doi]
- I/O Induced Scalability Limits of Bioinformatics ApplicationsRobert Henschel, Matthias S. Müller. 609-613 [doi]
- Large-Scale QM/MM Calculations of Electronic Excitations in Yellow Protein: Toward Petascale Level of Protein CalculationsMarek Freindorf, Matthew D. Jones, Yihan Shao, Jing Kong, Thomas R. Furlani. 614-619 [doi]
- MotifNetwork: A Grid-enabled Workflow for High-throughput Domain Analysis of Biological Sequences: Implications for annotation and study of phylogeny, protein interactions, and intraspecies variationJeffrey L. Tilson, Gloria Rendon, Mao-Feng Ger, Eric Jakobsson. 620-627 [doi]
- Toward Petascale Simulation of Cellular MicrophysiologyScott B. Baden, Terrence J. Sejnowski, Thomas M. Bartol, Joel Stiles. 628-634 [doi]
- Silent Killing: an Object-Oriented View of Hypertension and Kidney Failures Part IJacqueline Signorini, Patrick Greussay. 635-640 [doi]
- Medical Image Retrieval Based on Bidimensional Empirical Mode DecompositionWei Liu, Weidong Xu, Lihua Li. 641-646 [doi]
- A Modified Fuzzy Kohonen s Competitive Learning Algorithms Incorporating Local Information for MR Image SegmentationJun Kong, Wenjing Lu, Jianzhong Wang, Na Che, Yinghua Lu. 647-653 [doi]
- An Efficient Modeling and Simulation System on the Kidney Matching, Distribution and Exchange ProblemsLiu Siyuan, Liu Chao, Liu Yu, Zhao Chunzhe. 654-661 [doi]
- SiteSeeker - A Motif Discovery ToolKlaus H. Ecker, Lonnie R. Welch, Dazhang Gu. 662-664 [doi]
- Modeling protein interaction network and mechanisms in exocytosisWen Zhou, Tian Xia, Jiansong Tong, Julie A. Dickerson, Bo Su, Xun Gu. 665-672 [doi]
- Toward a Realistic Model for Gene Network EvolutionWenhai Chen, Tianzi Jiang, Tian Xia, Xun Gu. 673-679 [doi]
- Application of Wavelet Transform to the MS-based Proteomics Data PreprocessingPan Du, Simon M. Lin, Warren A. Kibbe, Haihui Wang. 680-686 [doi]
- Pathway Complements of Four YersiniaJennifer L. Neary, Maribel Sanchez, Yufeng Wang, Timothy G. Lilburn. 687-692 [doi]
- An Improved Ant Colony Optimization Algorithm Based on Route Optimization and Its Applications in Travelling Salesman ProblemYi Zhang, Zhi-Li Pei, Jinhui Yang, Yanchun Liang. 693-698 [doi]
- Characterization of MYC expression in gefitinib versus Acute Myeloid Leukemia reveals novel therapeutic targetsJames F. Courage, Saurabh Gupta, Yufeng Wang. 699-706 [doi]
- Hot and Cold: Spatial Fluctuation in HIV-1 Recombination RatesM. L. Rajaram, Vladimir N. Minin, Marc A. Suchard, Karin S. Dorman. 707-714 [doi]
- Computational Genome-Wide Discovery of Aberrant Splice Variations with Exon Expression ProfilesRyo Yoshida, Kazuyuki Numata, Seiya Imoto, Masao Nagasaki, Atsushi Doi, Kazuko Ueno, Satoru Miyano. 715-722 [doi]
- Mining Frequent Contiguous Sequence Patterns in Biological SequencesTae Ho Kang, Jae Soo Yoo, Hak Yong Kim. 723-728 [doi]
- Efficient Methods for Biomedical Named Entity RecognitionShing-Kit Chan, Wai Lam. 729-735 [doi]
- Stochastic Simulation Model for Patterned Neural Multi-Electrode ArraysDong-Soo Kahng, Yoonkey Nam, Doheon Lee. 736-740 [doi]
- Classification of Enzyme Function from Protein Sequence based on Feature RepresentationBum Ju Lee, Heon Gyu Lee, Jong Yun Lee, Keun Ho Ryu. 741-747 [doi]
- Inferring Behavioral-level Circuits of Caenorhabditis elegans from the Topology of its Wiring DiagramYunkyu Sohn, Jaeseung Jeong. 748-752 [doi]
- HAMMER Algorithm: Hashing with Arithmetic Modulo-4 for Motif Extraction of Regulatory ElementsHuitao Sheng, Kishan Mehrotra, Chilukuri K. Mohan, Ramesh Raina. 753-758 [doi]
- A Tale of Intronless Genes in Eukaryotic GenomesMeena K. Sakharkar, Kishore R. Sakharkar. 759-765 [doi]
- To fuse or not to fuseKishore R. Sakharkar, Meena K. Sakharkar. 766-773 [doi]
- Using Parsimony to Guide Maximum Likelihood SearchesKenneth Sundberg, Timothy O Connor, Hyrum Carroll, Mark J. Clement, Quinn Snell. 774-779 [doi]
- QOMA2: Optimizing the alignment of many sequencesXu Zhang, Tamer Kahveci. 780-787 [doi]
- A Reliable Metric for Quantifying Multiple Sequence AlignmentKen D. Nguyen, Yi Pan. 788-795 [doi]
- Amino Acid Substitution Matrices Based on 4-Body Delaunay Contact ProfilesAhmet Sacan, Ismail Hakki Toroslu. 796-801 [doi]
- A Heuristic for Phylogenetic Reconstruction Using TranspositionFeng Yue, Meng Zhang, Jijun Tang. 802-808 [doi]
- Phylogeny By Top Down Clustering Using a Given Multiple AlignmentAbdullah N. Arslan, Peyman Bizargity. 809-814 [doi]
- Reconstructing Mutational Pathways from Serial Evolutionary TreesPatricia Buendia. 815-820 [doi]
- Towards Construction of Optimal Strip-Exchanging MovesSwapnoneel Roy, Ashok Kumar Thakur. 821-827 [doi]
- Rough Overlapping Biclustering of Gene Expression DataRuizhi Wang, Duoqian Miao, Gang Li, Hongyun Zhang. 828-834 [doi]
- Using Domain-Based Structural Ensemble to Improve Structure ModelingFa Zhang, Zhaoyun Ma, Zhiyong Liu, Bo Yuan. 835-841 [doi]
- Support Vector Regression with Feature Selection for the Multivariate Calibration of Spectrofluorimetric Determination of Aromatic Amino AcidsGuo-Zheng Li, Hao-Hua Meng, Mary Qu Yang, Jack Y. Yang. 842-848 [doi]
- Bottom-Up Multiple Row Addition Algorithms for the Biclustering-ProblemHyung-Won Koh, Lars Hildebrand. 849-856 [doi]
- Fast Computation of Human Genetic LinkageHongling Wang, Alberto Maria Segre, Yungui Huang, Jeffrey R. O Connell, Veronica J. Vieland. 857-863 [doi]
- 3D Spectrum Analysis of DNA Sequence: Application to Caenorhabditis elegans GenomeAfef Elloumi Oueslati, Noureddine Ellouze, Zied Lachiri. 864-871 [doi]
- MotifNetwork: Genome-Wide Domain Analysis using Grid-enabled WorkflowsJeffrey L. Tilson, Alan Blatecky, Gloria Rendon, Mao-Feng Ger, Eric Jakobsson. 872-879 [doi]
- Profilins, Formins and Katanins as Flagellar Proteins of Leishmania spp.: a Genome-based, Multi-step Bioinformatics-driven DescriptionElton J. R. Vasconcelos, Ana C. L. Pacheco, Joao J. S. Gouveia, Fabiana F. Araújo, Michely C. Diniz, Michel T. Kamimura, Marcilia P. Costa, Rodrigo Maggioni, Raimundo Araujo-Filho, Raimundo B. Costa, Diana Magalhaes de Oliveira. 880-887 [doi]
- FPGA Acceleration of Phylogeny Reconstruction for Whole Genome DataJason D. Bakos, Panormitis E. Elenis, Jijun Tang. 888-895 [doi]
- A Preliminary Study of Correlation between Depth and Path Length of GO Nodes with Gene Sequence SimilarityElham Khabiri. 896-899 [doi]
- Mathematical Models and Optimization Discussion on EA System on AIDS/HIV Spread Estimating and Countermeasures EvaluatingLiu Siyuan, Liu Chao, Zhao Chunzhe, Liu Yu. 900-907 [doi]
- Fractal Dimension of Mie Scattering Spectra for the Appraisal of Infected HeLa Cells in CulturesRadu Dobrescu, Loretta Ichim. 908-913 [doi]
- Complexity-theoretic Modeling of Biological Cyanide Poisoning as Security Attack in Self-organizing NetworksJiejun Kong, Xiaoyan Hong, Dapeng Wu, Mario Gerla. 914-921 [doi]
- Quantitative and Probabilistic Modeling in Pathway LogicAlessandro Abate, Yu Bai, Nathalie Sznajder, Carolyn L. Talcott, Ashish Tiwari. 922-929 [doi]
- A 2D Vibration Array as an Assistive Device for Visually ImpairedDimitrios Dakopoulos, Sanjay K. Boddhu, Nikolaos G. Bourbakis. 930-937 [doi]
- Characterizing and Predicting Catalytic Residues in Enzyme Active Sites Based on Local Properties: A Machine Learning ApproachLeonardo Bobadilla, Fernando Niño, Edilberto Cepeda, Manuel A. Patarroyo. 938-945 [doi]
- Predicting Protein-Protein Interaction Based on Fisher Scores Extracted from Domain ProfilesTapan Patel, Li Liao. 946-951 [doi]
- A Novel Sequence-Structure Approach for Accurate Prediction of Resistance to HIV-1 Protease InhibitorsMajid Masso, Iosif I. Vaisman. 952-958 [doi]
- Prediction of Histone Modifications in DNA sequencesTho Hoan Pham, Tu Bao Ho, Dang Hung Tran, Kenji Satou. 959-966 [doi]
- Feature Selection and Partial Least Squares Based Dimension Reduction for Tumor ClassificationHua-Long Bu, Guo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang. 967-973 [doi]
- aCORR: A novel algorithm for clustering gene expression dataHossam S. Sharara, Mohamed A. Ismail. 974-981 [doi]
- An Intelligent System for Searching Genomic SequencesVandana Gummuluru, Su-Shing Chen. 982-986 [doi]
- XML Encoding of Features Describing Rule-Based Modeling of Reaction Networks with Multi-Component Molecular ComplexesMichael L. Blinov, Ion I. Moraru. 987-994 [doi]
- BALBOA: Extending Bicluster Analysis to Classify ORFs using Expression DataKenneth Bryan, Padraig Cunningham. 995-1002 [doi]
- A Comprehensive Fuzzy-Based Framework for Cancer Microarray Data Gene Expression AnalysisZhenyu Wang, Vasile Palade. 1003-1010 [doi]
- Ensemble of Kernel Based Classifiers to Improve the Human Cancer Prediction using DNA MicroarraysÁngela Blanco, Manuel Martín-Merino, Javier De Las Rivas. 1011-1018 [doi]
- Mining Order Preserving Patterns in Microarray Data by Finding Frequent OrdersLi Teng, Laiwan Chan. 1019-1026 [doi]
- A New Smoothing Model for Analyzing Array CGH DataNha Nguyen, Heng Huang, Soontorn Oraintara, An P. N. Vo. 1027-1034 [doi]
- Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression ProfilesSheehyun Kim, Dongsup Kim. 1035-1040 [doi]
- Multivariate Feature Selection using Random Subspace Classifiers for Gene Expression DataVidya P. Kamath, Lawrence O. Hall, Timothy J. Yeatman, Steven Eschrich. 1041-1045 [doi]
- Gene Selection via Matrix FactorizationFei Wang, Tao Li. 1046-1050 [doi]
- Mutual Information based Minimum Spanning Trees Model for Selecting Discriminative GenesFang Zhou, Jieyue He, Wei Zhong. 1051-1055 [doi]
- Gene-Markers Representation for Microarray Data IntegrationElena Baralis, Elisa Ficarra, Alessandro Fiori, Enrico Macii. 1056-1060 [doi]
- Partial Mixture Model for Tight Clustering in Exploratory Gene Expression AnalysisYinyin Yuan, Chang-Tsun Li. 1061-1065 [doi]
- rSWTi: A Robust Stationary Wavelet Denoising Method for Array CGH DataYuhang Wang, Siling Wang, Andrew R. Zinn. 1066-1070 [doi]
- An Empirical CDF Approach to Estimate the Significance of Gene Ranking for Finding Differentially Expressed GenesJahangheer S. Shaik, E. Olusegun George, Mohammed Yeasin. 1071-1075 [doi]
- Gene expression profiling and machine learning to understand and predict primary graft dysfunctionMonika Ray, Sekhar Dharmarajan, Johannes Freudenberg, G. Alexander Patterson, Weixiong Zhang. 1076-1080 [doi]
- Sensitivity and Consistency of Affymetrix GeneChip Normalization MethodsJared Fox, Nik Brown. 1081-1086 [doi]
- Statistical Shape Analysis of the Corpus Callosum in Subtypes of AutismQing He, Ye Duan, Judith Miles, Nicole Takahashi. 1087-1091 [doi]
- Simulation and Visualization of Menisci-Femur Contact Using Patient-Specific Deformable ModelsYing Zhu. 1092-1096 [doi]
- Improved edge map of geometrical active contour model based on coupling to anisotropic diffusion filteringFoued Derraz, Abdelmalik Taleb-Ahmed, Azzeddine Chikh, Fethi Bereksi-Reguig. 1097-1101 [doi]
- Analysis of cardiac wall motion estimation methodsSoroor Behbahani, Keivan Magholi. 1102-1107 [doi]
- Partial transmission high-speed continuous tracking multi-leaf collimator for 4D adaptive radiation therapyTarun Kanti Podder, Ivan Buzurovic, Yida Hu, James M. Galvin, Yan Yu. 1108-1112 [doi]
- Quantitative Analysis of Inter-object Spatial Relationships in Biological ImagesWamiq Manzoor Ahmed, Magdalena Jonczyk, Ali Shamsaie, Arif Ghafoor, J. Paul Robinson. 1113-1117 [doi]
- Histogram Transformation for Inter-Modality Image RegistrationJoerg Meyer. 1118-1123 [doi]
- The GPU on biomedical image processing for color and phenotype analysisAntonio Ruiz, Manuel Ujaldon, Jose Antonio Andrades, Jose Becerra, Kun Huang, Tony Pan, Joel H. Saltz. 1124-1128 [doi]
- Tissue Identification in Ultrasound Images using Rayleigh Local Parameter EstimationSantiago Aja-Fernández, Marcos Martín-Fernández, Carlos Alberola-López. 1129-1133 [doi]
- Exploring Cardioneural Signals from Noninvasive ECG MeasurementAmirali Shayan Arani, Yi Zhu, Yi-Ning Cheng, Chung-Kuan Cheng, Shien-Fong Lin, Peng-Sheng Chen. 1134-1138 [doi]
- MS Lesions Detection in MRI Using Grouping Artificial Immune NetworksAkmal A. Younis, Ahmed T. Soliman, Mansur R. Kabuka, Nigel M. John. 1139-1146 [doi]
- Non-negative Tensor Factorization Based on Alternating Large-scale Non-negativity-constrained Least SquaresHyunsoo Kim, Haesun Park, Lars Eldén. 1147-1151 [doi]
- A Computer Aided Tool for the Assessment of Human Sperm MorphologyHenry Carrillo, Jorge Villarreal, Miguel Sotaquira, Alvaro Goelkel, Ricardo Gutierrez. 1152-1157 [doi]
- Feature Estimation for Vocal Fold Edema Detection Using Short-Term Cepstral AnalysisBenedito G. Aguiar Neto, Joseana M. Fechine, Silvana Cunha Costa, Menaka Muppa. 1158-1162 [doi]
- A New Hybrid Technique for Dermatological Image RegistrationHeng Huang, Paul R. Bergstresser. 1163-1167 [doi]
- PID Control based on BP Neural Network for the Regulation of Blood Glucose Level in DiabetesChengwei Li, Ruiqiang Hu. 1168-1172 [doi]
- Spatiotemporal Analysis of an Agent-Based Model of a Colony of Keratinocytes: A First Approach for the Development of Validation MethodsCésar Pichardo-Almarza, Rod Smallwood, S. A. Billings. 1173-1177 [doi]
- A Suffix Tree Construction Algorithm for DNA SequencesHongwei Huo, Vojislav Stojkovic. 1178-1182 [doi]
- Identifying Fungal Regulatory Motif Patterns Using SCOPE, an Ensemble Learning Method Motif FinderViktor Martyanov, Larkin Elderon, Amy Gladfelter, Dhanalakshmi R. Nair, Robert H. Gross. 1183-1187 [doi]
- Computational Identification of Cis-regulatory Elements Associated with Pungency of Chili PeppersTieming Ji, Desh Ranjan, Jeanne Curry, Mary O Connell. 1188-1192 [doi]
- Speeding Up Pairwise Sequence Alignments: A Scoring Scheme Reweighting Based ApproachYong Gao, Michael Henderson. 1194-1198 [doi]
- Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern MatchingDan He, Abdullah N. Arslan, Yu He, Xindong Wu. 1199-1203 [doi]
- Differential Scoring for Systolic Sequence AlignmentAntonio E. de la Serna. 1204-1208 [doi]
- Determining Domain Similarity and Domain-Protein Similarity Using Functional Similarity Measurements of Gene Ontology TermsLisa M. Guntly, Jennifer L. Leopold, Anne M. Maglia. 1209-1213 [doi]
- Signal Representation and Processing of Nucleotide SequencesPaul Dan Cristea, Rodica Tuduce, Iulian Nastac, Jan Cornelis, Rudi Deklerck, Marius Andrei. 1214-1219 [doi]
- Cluster Analysis of Regulatory Sequences with a Log Likelihood Ratio Statistics-based Similarity MeasureHuiru Zheng, Haiying Wang, Jinglu Hu. 1220-1224 [doi]
- A PQRM-based PACS System for Advanced Medical Services under Grid EnvironmentYong-Jie Ni, Chan-Hyun Youn, Byoung-Jin Kim, Youngjoo Han, Peng Liu. 1225-1229 [doi]
- Middleware based Inpatient Healthcare Information SystemSung-huai Hsieh, Sheau-Ling Hsieh, Yung-Ching Weng, T. H. Yang, Feipei Lai, Po-Hsun Cheng, X. O. Ping, Mao-yu Jan, Jen-Chiun Lin, C. H. Peng, K. H. Huang, L. F. Ko, C.-H. Chen, K. P. Hsu. 1230-1234 [doi]
- Generating social networks of intimate contacts for the study of public health intervention strategiesCourtney Corley, Lindsey Brown, Armin R. Mikler, Diane J. Cook, Karan Singh. 1235-1239 [doi]
- Yin Yang Mental Squares - An Equilibrium-Based System For Bipolar Neurobiological Pattern Classification and AnalysisWen-Ran Zhang, Karl E. Peace. 1240-1244 [doi]
- Automatically Extracting Acronyms from Biomedical TextJared Fox, Nik Brown. 1245-1248 [doi]
- Feature Extraction and Parameters Selection of Classification Model on Brain-Computer InterfaceMingyuan Zhao, Mingtian Zhou, Qingxin Zhu, Ping Yang. 1249-1253 [doi]
- Consistent Modeling, Integration and Simulation of Molecular Interaction Networks in Space-Time DimensionRui Chang. 1254-1259 [doi]
- Feature Reduction for Gene Regulatory Network ControlMehmet Tan, Faruk Polat, Reda Alhajj. 1260-1264 [doi]
- Graph Mining of Networks from Genome BiologyGeorge Chin Jr., Grant C. Nakamura, Daniel G. Chavarría-Miranda, Heidi J. Sofia. 1265-1269 [doi]
- Structural Prediction of Protein-Protein Interactions in Saccharomyces cerevisiaeMartin S. R. Paradesi, Doina Caragea, William H. Hsu. 1270-1274 [doi]
- Complete Backtranslation of Oligopeptides for Metabolic Pathways Exploration of Complex Environments using Functional MicroarraysMohieddine Missaoui, David R. C. Hill, Cécile Militon, Pierre Peyret. 1275-1279 [doi]
- A Structure Learning Algorithm for Inference of Gene Networks from Microarray Gene Expression Data Using Bayesian NetworksKazuyuki Numata, Seiya Imoto, Satoru Miyano. 1280-1284 [doi]
- An Algorithm for Mining Fuzzy Association Rules Based on Immune PrinciplesZhang Lei, Li Ren-hou. 1285-1289 [doi]
- Toward The Recognition Code Of Protein-DNA RecognitionJuan Shan, Yuxuan Wang, Changhui Yan. 1290-1293 [doi]
- Self-Optimizing Parallel Algorithms for Haplotype Reconstruction and Their Evaluation on the JPT and CHB Genotype DataDragos Trinca, Sanguthevar Rajasekaran. 1294-1298 [doi]
- Reducing Folding Scenario Candidates in Pseudoknots Detection Using PLMM_DPSS Algorithm Integrated With Energy FiltersXiaolu Huang, Hesham H. Ali. 1299-1303 [doi]
- Exploring Topological Properties of NMR GraphsPaulius Micikevicius, Narsingh Deo. 1304-1307 [doi]
- Probability Analysis on Associations of Adverse Drug Events with Drug-Drug InteractionsYu-Ting Huang, Shih-Fang Lin, Chung-Cheng Chiu, Hsiang-Yuan Yeh, Von-Wun Soo. 1308-1312 [doi]
- Combining Semantics, Context, and Statistical Evidence in Genomics Literature SearchJay Urbain, Nazli Goharian, Ophir Frieder. 1313-1317 [doi]
- Graph and Topological Structure Mining on Scientific ArticlesFan Wang, Ruoming Jin, Gagan Agrawal, Helen Piontkivska. 1318-1322 [doi]
- Supervised HITS Algorithm for MEDLINE Citation RankingYing Liu, Yongjing Lin. 1323-1327 [doi]
- Storing Efficiently Bioinformatics WorkflowsMichel Kinsy, Zoé Lacroix. 1328-1332 [doi]
- Intelligent Interfaces for Mining Large-Scale RNAi-HCS Image DatabasesChen Lin, Wayne Mak, Pengyu Hong, Katharine Sepp, Norbert Perrimon. 1333-1337 [doi]
- GPX: A Tool for the Exploration and Visualization of Genome EvolutionNeha Nahar, Lutz Hamel, Maria S. Poptsova, J. Peter Gogarten. 1338-1342 [doi]
- SBLAST: Structural Basic Local Alignment Searching Tools using Geometric HashingTom Milledge, Gaolin Zheng, Tim Mullins, Giri Narasimhan. 1343-1347 [doi]
- G-protein Coupled Receptor Subfamilies Prediction Based on Nearest Neighbor ApproachMudassir Fayyaz, Adnan Mujahid, Asifullah Khan, Tae-Sun Choi, Nadeem Iqbal. 1348-1354 [doi]
- Protein Secondary Structure Prediction Using Genetic Neural Support Vector MachinesAnjum Reyaz-Ahmed, Yan-Qing Zhang. 1355-1359 [doi]
- An HV-SVM Classifier to Infer TF-TF Interactions Using Protein Domains and GO AnnotationsXiaoli Li, Jun-Xiang Lee, Bharadwaj Veeravalli, See-Kiong Ng. 1360-1364 [doi]
- Supervised Statistical and Machine Learning Approaches to Inferring Pairwise and Module-Based Protein Interaction NetworksFiona Browne, Haiying Wang, Huiru Zheng, Francisco Azuaje. 1365-1369 [doi]
- Predicting Protein Subcelluar Localizations Using Weighted Euclidian DistanceJing Hu, Changhui Yan. 1370-1373 [doi]
- An efficient data structure for applying multiple seeds in homology searchAlireza Hadj Khodabakhshi, Mehdi Mirzazadeh, Arvind Gupta. 1374-1378 [doi]
- A Mixture of Experts Method for Predicting Domain Boundaries in ProteinsIan MacDonald, George Berg. 1379-1383 [doi]
- SIGN: reliable protein interaction identification by integrating the Similarity In GO and the similarity in protein interaction NetworksWoochang Hwang, Taehyong Kim, Young-Rae Cho, Aidong Zhang, Murali Ramanathan. 1384-1388 [doi]
- Identification of Differential Flow Cytometry ExpressionElizabeth Rossin, Saumyadipta Pyne, Florian Hahne, Philip L. De Jager. 1389-1393 [doi]
- Performance Characterization of BLAST for the GridEnis Afgan, Purushotham Bangalore. 1394-1398 [doi]
- Large-scale Discovery of Regulatory Motifs Involved in Alternative SplicingSihui Zhao, Jihye Kim, Steffen Heber. 1399-1403 [doi]
- Semiparametric RMA Background-Correction for Oligonucleotide ArraysIonut Bebu, Françoise Seillier-Moiseiwitsch, Hongfang Liu. 1404-1408 [doi]
- Alternative Splicing: Associating Frequency with IsoformsAnuradha Roy, Jennifer L. Leopold, Anne M. Maglia. 1409-1413 [doi]
- A Proposed Statistical Protocol for the Analysis of Metabolic Toxicological Data Derived from NMR SpectroscopyBenjamin J. Kelly, Paul E. Anderson, Nicholas V. Reo, Nicholas J. DelRaso, Travis E. Doom, Michael L. Raymer. 1414-1418 [doi]
- A Framework for Mass Spectral Quality Assessment without Prior InformationFang-Xiang Wu, Jiarui Ding, Guy G. Poirier. 1419-1423 [doi]
- Using long fragments to reconstruct RNA backbonesTapani Utriainen, Graham J. L. Kemp. 1424-1428 [doi]
- A Modified Uniformization Method for the Chemical Master EquationJingwei Zhang, Layne T. Watson. 1429-1433 [doi]
- Decision Fusion of Circulating Markers for Breast Cancer Detection in Premenopausal WomenJonathan L. Jesneck, Sayan Mukherjee, Loren W. Nolte, Anna E. Lokshin, Jeffrey R. Marks, Joseph Lo. 1434-1438 [doi]
- Partial Least Squares Based Dimension Reduction with Gene Selection for Tumor ClassificationGuo-Zheng Li, Xue-Qiang Zeng, Jack Y. Yang, Mary Qu Yang. 1439-1444 [doi]
- Functional and Molecular Imaging: Key Components of Personalized HealthcareSteven Seltzer. 1445 [doi]
- Biomedical Literature MiningXiaohua Hu. 1446 [doi]
- An Overview of Bidirectional PromotersMary Qu Yang, Laura Elnitski. 1447 [doi]
- Distributed Wireless Sensors on the Human BodyRuzena Bajcsy. 1448 [doi]
- Transforming Medicine: Genomics, Bioinformatics, and Human HealthAndreas D. Baxevanis. 1449 [doi]
- Integrative Biomedical InformaticsBrian D. Athey. 1450 [doi]
- Bio-Nano-Info Integration for Personalized MedicineEric Jakobsson, May D. Wang, Linda Molnar. 1452 [doi]
- Using The Soybean Genome Database (SoyGD) To Display and Analyze a 1 Gbp Genome SequenceDavid A. Lightfoot, Mengxia Michelle Zhu. 1453 [doi]
- Biometrics Intelligence Information Systems and ApplicationsPatrick S. P. Wang. 1454 [doi]
- Knowledge Modeling for High Content Screening of Multimedia Biological DataArif Ghafoor, J. Paul Robinson. 1455 [doi]
- Reconstructing Signal Transduction from Raw Genomic DataIgor B. Zhulin. 1456 [doi]
- Studying Co-Regulation and Inter-Regulation of Genes via eQTL MappingTian Zheng. 1457 [doi]
- Lecture on Progress toward Petascale Applications in Bioinformatics and Computational BiologyCraig A. Stewart, Malinda Lingwall, David Bade. 1458 [doi]
- Performance Evaluation of a Scalable Molecular Dynamics Simulation Framework on a Massively-Parallel SystemSadaf R. Alam, Pratul K. Agarwal, Jeffery A. Kuehn. 1459-1466 [doi]