Dongsup Kim - researchr alias

researchr

You are not signed in
Sign in
Sign up

Viewing Publication 1 - 34 from 34

2024

AbFlex: designing antibody complementarity determining regions with flexible CDR definitionWoosung Jeon, Dongsup Kim. bioinformatics, 40(3), March 2024. [doi]

2022

DeepLUCIA: predicting tissue-specific chromatin loops using Deep Learning-based Universal Chromatin Interaction AnnotatorDongchan Yang, Taesu Chung, Dongsup Kim. bioinformatics, 38(14):3501-3512, 2022. [doi]

2020

Prediction of mutation effects using a deep temporal convolutional networkHa-Young Kim, Dongsup Kim. bioinformatics, 36(7):2047-2052, 2020. [doi]

CRDS: Consensus Reverse Docking System for target fishingAeri Lee, Dongsup Kim. bioinformatics, 36(3):959-960, 2020. [doi]

2019

FP2VEC: a new molecular featurizer for learning molecular propertiesWoosung Jeon, Dongsup Kim. bioinformatics, 35(23):4979-4985, 2019. [doi]

2018

KRDS: a web server for evaluating drug resistance mutations in kinases by molecular dockingAeri Lee, Seungpyo Hong, Dongsup Kim. jcheminf, 10(1), 2018. [doi]

3DIV: A 3D-genome Interaction Viewer and databaseDongchan Yang, Insu Jang, Jinhyuk Choi, Minseo Kim, Andrew J. Lee, Hyun-Woong Kim, Junghyun Eom, Dongsup Kim, Inkyung Jung, Byungwook Lee. nar, 46(Database-Issue), 2018. [doi]

2017

Deep convolutional neural networks for pan-specific peptide-MHC class I binding predictionYoungmahn Han, Dongsup Kim. bmcbi, 18(1), 2017. [doi]

Utilizing random Forest QSAR models with optimized parameters for target identification and its application to target-fishing serverKyoungyeul Lee, Minho Lee, Dongsup Kim. bmcbi, 18(16):75-86, 2017. [doi]

2016

Library of binding protein scaffolds (LibBP): a computational platform for selection of binding protein scaffoldsSeungpyo Hong, Dongsup Kim. bioinformatics, 32(11):1709-1715, 2016. [doi]

Structure-based Markov random field model for representing evolutionary constraints on functional sitesChan-seok Jeong, Dongsup Kim. bmcbi, 17:99, 2016. [doi]

2013

Interaction network among functional drug groupsMinho Lee, Keunwan Park, Dongsup Kim. bmcsb, 7(S-3), 2013. [doi]

FitSearch: a robust way to interpret a yeast fitness profile in terms of drug's mode-of-actionMinho Lee, Sangjo Han, Hyeshik Chang, Youn-Sig Kwak, David M. Weller, Dongsup Kim. bmcgenomics, 14(S-1), 2013. [doi]

2012

A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory networkChangki Hong, Minho Lee, Dongsup Kim, Dong San Kim, Kwang-Hyun Cho, Insik Shin. bmcsb, 6:129, 2012. [doi]

Coevolved Residues and the Functional Association for Intrinsically Disordered ProteinsChan-seok Jeong, Dongsup Kim. psb 2012: 140-151 [doi]

Large-scale reverse docking profiles and their applicationsMinho Lee, Dongsup Kim. bmcbi, 13(S-17), 2012. [doi]

2011

Drug-drug relationship based on target information: application to drug target identificationKeunwan Park, Dongsup Kim. bmcsb, 5(S-2), 2011. [doi]

Modeling allosteric signal propagation using protein structure networksKeunwan Park, Dongsup Kim. bmcbi, 12(S-1), 2011. [doi]

2010

Linear predictive coding representation of correlated mutation for protein sequence alignmentChan-seok Jeong, Dongsup Kim. bmcbi, 11(S-2):2, 2010. [doi]

PostMod: sequence based prediction of kinase-specific phosphorylation sites with indirect relationshipInkyung Jung, Akihisa Matsuyama, Minoru Yoshida, Dongsup Kim. bmcbi, 11(S-1):10, 2010. [doi]

2009

Linear predictive coding representation of correlated mutation for protein sequence alignmentChan-seok Jeong, Dongsup Kim. CIKM 2009: 27-34 [doi]

SIMPRO: simple protein homology detection method by using indirect signalsInkyung Jung, Dongsup Kim. bioinformatics, 25(6):729-735, 2009. [doi]

A new method for revealing correlated mutations under the structural and functional constraints in proteinsByung-chul Lee, Dongsup Kim. bioinformatics, 25(19):2506-2513, 2009. [doi]

2008

Inference of Protein Complex Activities from Chemical-Genetic Profile and Its Applications: Predicting Drug-Target PathwaysSangjo Han, Dongsup Kim. ploscb, 4(8), 2008. [doi]

Application of nonnegative matrix factorization to improve profile-profile alignment features for fold recognition and remote homolog detectionInkyung Jung, Jaehyung Lee, Soo-Young Lee, Dongsup Kim. bmcbi, 9, 2008. [doi]

2007

Inference of Gene Regulatory Networks Using Time Sliding Comparison and Transcriptional Lagging Time from Time Series Gene Expression ProfilesSheehyun Kim, Dongsup Kim. bibe 2007: 1035-1040 [doi]

Predicting and improving the protein sequence alignment quality by support vector regressionMinho Lee, Chan-seok Jeong, Dongsup Kim. bmcbi, 8, 2007. [doi]

2006

AtRTPrimer: database for Arabidopsis genome-wide homogeneous and specific RT-PCR primer-pairsSangjo Han, Dongsup Kim. bmcbi, 7:179, 2006. [doi]

2005

Fold recognition by combining profile-profile alignment and support vector machineSangjo Han, Byung-chul Lee, Seung Taek Yu, Chan-seok Jeong, Soyoung Lee, Dongsup Kim. bioinformatics, 21(11):2667-2673, 2005. [doi]

2003

2002

Automated assignment of backbone NMR peaks using constrained bipartite matchingYing Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang. cse, 4(1):50-62, 2002. [doi]

Sign in or sign up to see more results.

runs on WebDSL