Abstract is missing.
- Session IntroductionRachel Karchin, Michael F. Ochs, Joshua M. Stuart, Joel S. Bader. 1-6 [doi]
- SSLPred : Predicting Synthetic Sickness LethalityNirmalya Bandyopadhyay, Sanjay Ranka, Tamer Kahveci. 7-18 [doi]
- Predicting the Effects of Copy-Number Variation in Double and Triple Mutant CombinationsGregory W. Carter, Michelle Hays, Song Li, Timothy Galitski. 19-30 [doi]
- Integrative Network Analysis to Identify Aberrant Pathway Networks in Ovarian CancerLi Chen, Jianhua Xuan, Jinghua Gu, Yue Wang, Li Chen, Zhen Zhang, Tian-Li Wang, Ie-Ming Shih. 31-42 [doi]
- Role of Synthetic Genetic Interactions in Understanding Functional Interactions Among PathwaysShahin Mohammadi, Giorgios Kollias, Ananth Grama. 43-54 [doi]
- Discovery of Mutated Subnetworks Associated with Clinical Data in CancerFabio Vandin, Patrick Clay, Eli Upfal, Benjamin J. Raphael. 55-66 [doi]
- Session introductionJianhan Chen, Jianlin Cheng, A. Keith Dunker. 67-69 [doi]
- Quasi-Anharmonic Analysis Reveals Intermediate States in the Nuclear Co-Activator Receptor Binding Domain EnsembleVirginia M. Burger, Arvind Ramanathan, Andrej J. Savol, Christopher B. Stanley, Pratul K. Agarwal, Chakra Chennubhotla. 70-81 [doi]
- Efficient Construction of Disordered Protein Ensembles in a Bayesian Framework with Optimal Selection of ConformationsCharles K. Fisher, Orly Ullman, Collin M. Stultz. 82-93 [doi]
- Correlation Between Posttranslational Modification and Intrinsic Disorder in ProteinJianjiong Gao, Dong Xu. 94-103 [doi]
- Intrinsic Disorder Within and Flanking the DNA-Binding Domains of Human Transcription FactorsXin Guo, Martha L. Bulyk, Alexander J. Hartemink. 104-115 [doi]
- Intrinsic Protein Disorder and Protein-Protein InteractionsWei-Lun Hsu, Christopher J. Oldfield, Jingwei Meng, Fei Huang, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker. 116-127 [doi]
- Subclassifying Disordered Proteins by the CH-CDF Plot MethodFei Huang, Christopher J. Oldfield, Jingwei Meng, Wei-Lun Hsu, Bin Xue, Vladimir N. Uversky, Pedro Romero, A. Keith Dunker. 128-139 [doi]
- Coevolved Residues and the Functional Association for Intrinsically Disordered ProteinsChan-seok Jeong, Dongsup Kim. 140-151 [doi]
- Cryptic Disorder: An Order-Disorder Transformation Regulates the Function of NucleophosminDiana M. Mitrea, Richard W. Kriwacki. 152-163 [doi]
- Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD NavigatorAshwini Patil, Shunsuke Teraguchi, Huy Dinh, Kenta Nakai, Daron M. Standley. 164-175 [doi]
- On the Complementarity of the Consensus-Based Disorder PredictionZhen-Ling Peng, Lukasz A. Kurgan. 176-187 [doi]
- Modulating Protein-DNA Interactions by Post-Translational Modifications at Disordered RegionsDana Vuzman, Yonit Hoffman, Yaakov Levy. 188-199 [doi]
- Session introductionJames A. Foster, Jason H. Moore, Jack A. Gilbert, John Bunge. 200-202 [doi]
- Estimating Population Diversity with Unreliable Low Frequency CountsJohn Bunge, Dankmar Böhning, Heather K. Allen, James A. Foster. 203-212 [doi]
- Comparisons of Distance Methods for Combining Covariates and Abundances in Microbiome StudiesJulia Fukuyama, Paul J. McMurdie, Les Dethlefsen, David A. Relman, Susan Holmes. 213-224 [doi]
- Proteotyping of Microbial Communities by Optimization of Tandem Mass Spectrometry Data InterpretationAlys Hugo, Douglas J. Baxter, William R. Cannon, Ananth Kalyanaraman, Gaurav Ramesh Kulkarni, Stephen J. Callister. 225-234 [doi]
- phyloseq: A Bioconductor Package for Handling and Analysis of High-Throughput Phylogenetic Sequence DataPaul J. McMurdie, Susan Holmes. 235-246 [doi]
- SEPP: SATe -Enabled Phylogenetic PlacementSiavash Mirarab, Nam Nguyen, Tandy Warnow. 247-258 [doi]
- Artificial Functional Difference Between Microbial Communities Caused by Length Difference of Sequencing ReadsQuan Zhang, Thomas G. Doak, Yuzhen Ye. 259-270 [doi]
- MetaDomain: A Profile HMM-Based Protein Domain Classification Tool for Short SequencesYuan Zhang, Yanni Sun. 271-282 [doi]
- Session introductionJason E. McDermott, Pascal Braun, Richard Bonneau, Daniel R. Hyduke. 283-286 [doi]
- Structural Models for Host-Pathogen Protein-Protein Interactions: Assessing Coverage and BiasEric A. Franzosa, Yu Xia. 287-298 [doi]
- Identification of Cell Cycle-Regulated, Putative Hyphal Genes in Candida AlbicansRaluca Gordân, Saumyadipta Pyne, Martha L. Bulyk. 299-310 [doi]
- Determining Confidence of Predicted Interactions Between HIV-1 and Human Proteins Using Conformal MethodIlia Nouretdinov, Alex J. Gammerman, Yanjun Qi, Judith Klein-Seetharaman. 311-322 [doi]
- Session introductionOliver Stegle, Frederick P. Roth, Quaid Morris, Jennifer Listgarten. 323-326 [doi]
- Finding Genome-Transcriptome-Phenome Associations with Structured Association Mapping and Visualization in GenAMapRoss E. Curtis, Junming Yin, Peter Kinnaird, Eric P. Xing. 327-338 [doi]
- Interpretome: A Freely Available, Modular, and Secure Personal Genome Interpretation EngineKonrad J. Karczewski, Robert P. Tirrell, Pablo Cordero, Nicholas P. Tatonetti, Joel T. Dudley, Keyan Salari, Michael Snyder, Russ B. Altman, Stuart K. Kim. 339-350 [doi]
- A Kinase Inhibition Map Approach for Tumor Sensitivity Prediction and Combination Therapy Design for Targeted DrugsRanadip Pal, Noah Berlow. 351-362 [doi]
- Mixture Model for Sub-Phenotyping in GWASDavid Warde-Farley, Michael Brudno, Quaid Morris, Anna Goldenberg. 363-374 [doi]
- Session introductionKevin Bretonnel Cohen, Yael Garten, Nigam Shah, Udo Hahn. 375 [doi]
- The Extraction of Pharmacogenetic and Pharmacogenomic Relations - A Case Study Using PharmGKBEkaterina Buyko, Elena Beisswanger, Udo Hahn. 376-387 [doi]
- Linking PharmGKB to Phenotype Studies and Animal Models of Disease for Drug RepurposingRobert Hoehndorf, Anika Oellrich, Dietrich Rebholz-Schuhmann, Paul N. Schofield, Georgios V. Gkoutos. 388-399 [doi]
- Integrating VA's NDF-RT Drug Terminology with PharmGKB: Preliminary ResultsJyotishman Pathak, Laura C. Weiss, Matthew J. Durski, Qian Zhu, Robert R. Freimuth, Christopher G. Chute. 400-409 [doi]
- Discovery and Explanation of Drug-Drug Interactions via Text MiningBethany Percha, Yael Garten, Russ B. Altman. 410-421 [doi]
- Ranking Gene-Drug Relationships in Biomedical Literature Using Latent Dirichlet AllocationYonghui Wu, Mei Liu, W. Jim Zheng, Zhongming Zhao, Hua Xu. 422-433 [doi]
- The Structure and Function of Chromatin and ChromosomesWilliam Stafford Noble, C. Anthony Blau, Job Dekker, Zhi-jun Duan, Yi Mao. 434-440 [doi]
- Law, Bioethics and the Current Status of Ownership, Privacy, Informed Consent in the Genomic AgeGregory Hampikian, Eric M. Meslin. 441 [doi]
- Systems Pharmacogenomics-Bridging the GapMarylyn D. Ritchie, Nancy Cox, Cheng Cheng, Scott Weiss, Teri E. Klein, Russ B. Altman. 442 [doi]