Daron M. Standley - researchr alias

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Viewing Publication 1 - 19 from 19

2022

Advances in antibody discovery from human BCR repertoiresZichang Xu, Hendra S. Ismanto, Hao Zhou, Dianita S. Saputri, Fuminori Sugihara, Daron M. Standley. fbinf, 2, 2022. [doi]

2019

MAFFT-DASH: integrated protein sequence and structural alignmentJohn Rozewicki, Songling Li, Karlou Mar Amada, Daron M. Standley, Kazutaka Katoh. nar, 47(Webserver-Issue), 2019. [doi]

2016

A simple method to control over-alignment in the MAFFT multiple sequence alignment programKazutaka Katoh, Daron M. Standley. bioinformatics, 32(13):1933-1942, 2016. [doi]

2014

Kotai Antibody Builder: automated high-resolution structural modeling of antibodiesKazuo Yamashita, Kazuyoshi Ikeda, Karlou Mar Amada, Shide Liang, Yuko Tsuchiya, Haruki Nakamura, Hiroki Shirai, Daron M. Standley. bioinformatics, 30(22):3279-3280, 2014. [doi]

2013

A novel function prediction approach using protein overlap networksShide Liang, Dandan Zheng, Daron M. Standley, Huarong Guo, Chi Zhang. bmcsb, 7:61, 2013. [doi]

A Parzen window-based approach for the detection of locally enriched transcription factor binding sitesAlexis Vandenbon, Yutaro Kumagai, Shunsuke Teraguchi, Karlou Mar Amada, Shizuo Akira, Daron M. Standley. bmcbi, 14:26, 2013. [doi]

2012

2011

2010

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflowsToshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn 0004, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William S. York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi. biomedsem, 1:8, 2010. [doi]

The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflowsToshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita, Yasunori Yamamoto, Atsuko Yamaguchi, Shuichi Kawashima, Hong-Woo Chun, Jan Aerts, Bruno Aranda, Lord H. Barboza, Raoul J. P. Bonnal, Richard M. Bruskiewich, Jan Christian Bryne, José M. Fernández, Akira Funahashi, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge, Richard C. G. Holland, Yoshinobu Kano, Edward A. Kawas, Arnaud Kerhornou, Eri Kibukawa, Akira R. Kinjo, Michael Kuhn 0004, Hilmar Lapp, Heikki Lehväslaiho, Hiroyuki Nakamura, Yasukazu Nakamura, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins, René Ranzinger, Florian Reisinger, Lukasz Salwínski, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles, Rutger A. Vos, Mark D. Wilkinson, William York, Christian M. Zmasek, Kiyoshi Asai, Toshihisa Takagi. biomedsem, 1:8, 2010. [doi]

EPSVR and EPMeta: prediction of antigenic epitopes using support vector regression and multiple server resultsShide Liang, Dandan Zheng, Daron M. Standley, Bo Yao, Martin Zacharias, Chi Zhang. bmcbi, 11:381, 2010. [doi]

::::SeSAW::::: balancing sequence and structural information in protein functional mappingDaron M. Standley, Reiko Yamashita, Akira R. Kinjo, Hiroyuki Toh, Haruki Nakamura. bioinformatics, 26(9):1258-1259, 2010. [doi]

Intrinsically disordered domains deviate significantly from random sequences in mammalian proteinsShunsuke Teraguchi, Ashwini Patil, Daron M. Standley. bmcbi, 11(S-7), 2010. [doi]

2008

Protein structure databases with new web services for structural biology and biomedical researchDaron M. Standley, Akira R. Kinjo, Kengo Kinoshita, Haruki Nakamura. bib, 9(4):276-285, 2008. [doi]

2007

ASH structure alignment package: Sensitivity and selectivity in domain classificationDaron M. Standley, Hiroyuki Toh, Haruki Nakamura. bmcbi, 8, 2007. [doi]

2005

GASH: An improved algorithm for maximizing the number of equivalent residues between two protein structuresDaron M. Standley, Hiroyuki Toh, Haruki Nakamura. bmcbi, 6:221, 2005. [doi]

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