| 249 | -- | 251 | James J. Cimino, Barry Smith. Introduction: International Medical Informatics Association Working Group 6 and the 2005 Rome Conference |
| 252 | -- | 266 | Alexander C. Yu. Methods in biomedical ontology |
| 267 | -- | 273 | Alexa T. McCray. Conceptualizing the world: Lessons from history |
| 274 | -- | 287 | Ingvar Johansson. Bioinformatics and biological reality |
| 288 | -- | 298 | Barry Smith. From concepts to clinical reality: An essay on the benchmarking of biomedical terminologies |
| 299 | -- | 306 | James J. Cimino. In defense of the Desiderata |
| 307 | -- | 313 | Anita Burgun. Desiderata for domain reference ontologies in biomedicine |
| 314 | -- | 320 | Judith A. Blake, Carol J. Bult. Beyond the data deluge: Data integration and bio-ontologies |
| 321 | -- | 332 | Christiane Fellbaum, Udo Hahn, Barry Smith. Towards new information resources for public health - From WordNet to MedicalWordNet |
| 333 | -- | 349 | Alan L. Rector, Jeremy Rogers, Thomas Bittner. Granularity, scale and collectivity: When size does and does not matter |
| 350 | -- | 361 | Stefan Schulz, Anand Kumar, Thomas Bittner. Biomedical ontologies: What ::::part-of:::: is and isn t |
| 362 | -- | 378 | Werner Ceusters, Barry Smith. Strategies for referent tracking in electronic health records |