| 3 | -- | 7 | Barry Smith, Richard H. Scheuermann. Ontologies for clinical and translational research: Introduction |
| 8 | -- | 25 | Mathias Brochhausen, Andrew D. Spear, Cristian Cocos, Gabriele Weiler, Luis Martín, Alberto Anguita, Holger Stenzhorn, Evangelia Daskalaki, Fatima Schera, Ulf Schwarz, Stelios Sfakianakis, Stephan Kiefer, Martin Doerr, Norbert M. Graf, Manolis Tsiknakis. The ACGT Master Ontology and its applications - Towards an ontology-driven cancer research and management system |
| 26 | -- | 34 | William R. Hogan. Towards an ontological theory of substance intolerance and hypersensitivity |
| 35 | -- | 41 | Albert Goldfain, Barry Smith, Lindsay G. Cowell. Towards an ontological representation of resistance: The case of MRSA |
| 42 | -- | 47 | Pantelis Topalis, Emmanuel Dialynas, Elvira Mitraka, Elena Deligianni, Inga Siden-Kiamos, Christos Louis. A set of ontologies to drive tools for the control of vector-borne diseases |
| 48 | -- | 58 | Y. Megan Kong, Carl Dahlke, Qun Xiang, Yu Qian, David R. Karp, Richard H. Scheuermann. Toward an ontology-based framework for clinical research databases |
| 59 | -- | 74 | Dennis G. Thomas, Rohit V. Pappu, Nathan A. Baker. NanoParticle Ontology for cancer nanotechnology research |
| 75 | -- | 79 | Alexander D. Diehl, Alison Deckhut Augustine, Judith A. Blake, Lindsay G. Cowell, Elizabeth S. Gold, Timothy A. Gondré-Lewis, Anna Maria Masci, Terrence F. Meehan, Penelope A. Morel, Anastasia Nijnik, Bjoern Peters, Bali Pulendran, Richard H. Scheuermann, Q. Alison Yao, Martin S. Zand, Christopher J. Mungall. Hematopoietic cell types: Prototype for a revised cell ontology |
| 80 | -- | 86 | Christopher J. Mungall, Michael Bada, Tanya Z. Berardini, Jennifer I. Deegan, Amelia Ireland, Midori A. Harris, David P. Hill, Jane Lomax. Cross-product extensions of the Gene Ontology |
| 87 | -- | 93 | Christopher J. Mungall, Colin R. Batchelor, Karen Eilbeck. Evolution of the Sequence Ontology terms and relationships |
| 94 | -- | 101 | Michael Bada, Lawrence Hunter. Desiderata for ontologies to be used in semantic annotation of biomedical documents |
| 102 | -- | 117 | Marianne Shaw, Landon Fridman Detwiler, Natalya Noy, James F. Brinkley, Dan Suciu. vSPARQL: A view definition language for the semantic web |
| 118 | -- | 125 | Montserrat Batet, David Sánchez, Aïda Valls. An ontology-based measure to compute semantic similarity in biomedicine |
| 126 | -- | 136 | Bernardo Gonçalves, Giancarlo Guizzardi, José Gonçalves Pereira Filho. Using an ECG reference ontology for semantic interoperability of ECG data |
| 137 | -- | 145 | Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo, Ivo D. Dinov, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, Peter Lyster. The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research |
| 146 | -- | 154 | John H. Gennari, Maxwell Lewis Neal, Michal Galdzicki, Daniel L. Cook. Multiple ontologies in action: Composite annotations for biosimulation models |
| 155 | -- | 162 | Pinar Wennerberg, Klaus Schulz, Paul Buitelaar. Ontology modularization to improve semantic medical image annotation |
| 163 | -- | 179 | Kaihong Liu, William R. Hogan, Rebecca S. Crowley. Natural Language Processing methods and systems for biomedical ontology learning |