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    Journal: Journal of Biomedical Informatics

    Volume 37, Issue 6

    393 -- 395Sophia Ananiadou, Carol Friedman, Jun-ichi Tsujii. Introduction: named entity recognition in biomedicine
    396 -- 410Alexander A. Morgan, Lynette Hirschman, Marc E. Colosimo, Alexander S. Yeh, Jeffrey B. Colombe. Gene name identification and normalization using a model organism database
    411 -- 422Jie Zhang, Dan Shen, Guodong Zhou, Jian Su, Chew Lim Tan. Enhancing HMM-based biomedical named entity recognition by studying special phenomena
    423 -- 435Nigel Collier, Koichi Takeuchi. Comparison of character-level and part of speech features for name recognition in biomedical texts
    436 -- 447Ki-Joong Lee, Young-Sook Hwang, Seonho Kim, Hae-Chang Rim. Biomedical named entity recognition using two-phase model based on SVMs
    448 -- 460Wen-Juan Hou, Hsin-Hsi Chen. Enhancing performance of protein and gene name recognizers with filtering and integration strategies
    461 -- 470Yoshimasa Tsuruoka, Jun-ichi Tsujii. Improving the performance of dictionary-based approaches in protein name recognition
    471 -- 482Kaoru Yamamoto, Taku Kudo, Akihiko Konagaya, Yuji Matsumoto. Use of morphological analysis in protein name recognition
    483 -- 497Irena Spasic, Sophia Ananiadou. Using automatically learnt verb selectional preferences for classification of biomedical terms
    498 -- 511Manabu Torii, Sachin Kamboj, K. Vijay-Shanker. Using name-internal and contextual features to classify biological terms
    512 -- 526Michael Krauthammer, Goran Nenadic. Term identification in the biomedical literature

    Volume 37, Issue 5

    305 -- 318Dongwen Wang, Mor Peleg, Samson W. Tu, Aziz A. Boxwala, Omolola Ogunyemi, Qing T. Zeng, Robert A. Greenes, Vimla L. Patel, Edward H. Shortliffe. Design and implementation of the GLIF3 guideline execution engine
    319 -- 324Roy Rada, Scott Finley. The aging of a clinical information system
    325 -- 344Yuval Shahar, Ohad Young, Erez Shalom, Maya Galperin, Alon Mayaffit, Robert Moskovitch, Alon Hessing. A framework for a distributed, hybrid, multiple-ontology clinical-guideline library, and automated guideline-support tools
    345 -- 357Kevin Y. Yip, David W. Cheung, Michael K. Ng, Kei-Hoi Cheung. Identifying projected clusters from gene expression profiles
    358 -- 365Qihua Tan, Klaus Brusgaard, Torben A. Kruse, Edward J. Oakeley, Brian A. Hemmings, Henning Beck-Nielsen, Lars Hansen, Michael Gaster. Correspondence analysis of microarray time-course data in case-control design
    366 -- 379Ray L. Somorjai, B. Dolenko, Aleksander B. Demko, M. Mandelzweig, A. E. Nikulin, Richard Baumgartner, Nicolino J. Pizzi. Mapping high-dimensional data onto a relative distance plane - an exact method for visualizing and characterizing high-dimensional patterns
    380 -- 391Tim W. Nattkemper. Multivariate image analysis in biomedicine

    Volume 37, Issue 4

    221 -- 223Lucila Ohno-Machado. Research on machine learning issues in biomedical informatics modeling
    224 -- 239Predrag Radivojac, Nitesh V. Chawla, A. Keith Dunker, Zoran Obradovic. Classification and knowledge discovery in protein databases
    240 -- 248Fei Pan, Baoying Wang, Xin Hu, William Perrizo. Comprehensive vertical sample-based KNN/LSVM classification for gene expression analysis
    249 -- 259Xiaobo Zhou, Kuang-Yu Liu, Stephen T. C. Wong. Cancer classification and prediction using logistic regression with Bayesian gene selection
    260 -- 268Ju Han Kim, Dooil Jeoung, Seongeun Lee, Hyeouneui Kim. Discovering significant and interpretable patterns from multifactorial DNA microarray data with poor replication
    269 -- 284Dragan Gamberger, Nada Lavrac, Filip Zelezný, Jakub Tolar. Induction of comprehensible models for gene expression datasets by subgroup discovery methodology
    285 -- 292Richard Butterworth, Dan A. Simovici, Gustavo S. Santos, Lucila Ohno-Machado. A greedy algorithm for supervised discretization
    293 -- 303Winston Patrick Kuo, Eun-Young Kim, Jeff Trimarchi, Tor-Kristian Jenssen, Staal A. Vinterbo, Lucila Ohno-Machado. A primer on gene expression and microarrays for machine learning researchers

    Volume 37, Issue 3

    139 -- 146Donald S. Gardner. Using genomics to help predict drug interactions
    147 -- 161Aziz A. Boxwala, Mor Peleg, Samson W. Tu, Omolola Ogunyemi, Qing T. Zeng, Dongwen Wang, Vimla L. Patel, Robert A. Greenes, Edward H. Shortliffe. GLIF3: a representation format for sharable computer-interpretable clinical practice guidelines
    162 -- 178Yao Sun. Methods for automated concept mapping between medical databases
    179 -- 192Bradley Malin, Latanya Sweeney. How (not) to protect genomic data privacy in a distributed network: using trail re-identification to evaluate and design anonymity protection systems
    193 -- 204Jiajie Zhang, Vimla L. Patel, Todd R. Johnson, Edward H. Shortliffe. A cognitive taxonomy of medical errors
    205 -- 219Konstantinos Karasavvas, Richard A. Baldock, Albert Burger. Bioinformatics integration and agent technology

    Volume 37, Issue 2

    77 -- 85Jorge E. Caviedes, James J. Cimino. Towards the development of a conceptual distance metric for the UMLS
    86 -- 98Paul R. Falzer. Cognitive schema and naturalistic decision making in evidence-based practices
    99 -- 107Santiago Aja-Fernández, Rodrigo de Luis García, Miguel Ángel Martín-Fernández, Carlos Alberola-López. A computational TW3 classifier for skeletal maturity assessment. A ::::Computing with Words:::: approach
    108 -- 119Ida Sim, Ben Olasov, Simona Carini. An ontology of randomized controlled trials for evidence-based practice: content specification and evaluation using the competency decomposition method
    120 -- 127Wendy Webber Chapman, John N. Dowling, Michael M. Wagner. Fever detection from free-text clinical records for biosurveillance
    128 -- 137Wanda Pratt, Madhu C. Reddy, David W. McDonald, Peter Tarczy-Hornoch, John H. Gennari. Incorporating ideas from computer-supported cooperative work

    Volume 37, Issue 1

    1 -- 9Luis Alberto Carvalho. A simple and effective algorithm for detection of arbitrary Hartmann-Shack patterns
    10 -- 18Axel Wismüller, Anke Meyer-Bäse, Oliver Lange, Dorothee Auer, Maximilian F. Reiser, DeWitt Sumners. Model-free functional MRI analysis based on unsupervised clustering
    19 -- 29Brian E. Chapman, Dennis L. Parker, Janet O. Stapelton, Jay S. Tsuruda, Claudia Mello-Thoms, Bronwin Hamilton, Gregory L. Katzman, Kevin Moore. Diagnostic fidelity of the Z-buffer segmentation algorithm: preliminary assessment based on intracranial aneurysm detection
    30 -- 42Fernando Martín-Sánchez, Ilias Iakovidis, S. Nørager, Victor Maojo, Piet C. de Groen, Johan van der Lei, T. Jones, Klaus Abraham-Fuchs, R. Apweiler, Ankica Babic. Synergy between medical informatics and bioinformatics: facilitating genomic medicine for future health care
    43 -- 53Andrey Rzhetsky, Ivan Iossifov, Tomohiro Koike, Michael Krauthammer, Pauline Kra, Mitzi Morris, Hong Yu, Pablo Ariel Duboué, Wubin Weng, W. John Wilbur. GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
    54 -- 55Paul Pavlidis. Book Review
    56 -- 76André Kushniruk, Vimla L. Patel. Cognitive and usability engineering methods for the evaluation of clinical information systems
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