Jun-ichi Tsujii - researchr alias

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Viewing Publication 1 - 100 from 179

2011

Effective Use of Dependency Structure for Bilingual Lexicon CreationDaniel Andrade, Takuya Matsuzaki, Jun-ichi Tsujii. cicling 2011: 80-92 [doi]

Multi-topical Discussion Summarization Using Structured Lexical Chains and Cue WordsJun Hatori, Akiko Murakami, Jun-ichi Tsujii. cicling 2011: 313-327 [doi]

U-Compare: A modular NLP workflow construction and evaluation systemYoshinobu Kano, Makoto Miwa, K. Bretonnel Cohen, Lawrence Hunter, Sophia Ananiadou, Jun-ichi Tsujii. ibmrd, 55(3):11, 2011. [doi]

AGRA: analysis of gene ranking algorithmsSimon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun-ichi Tsujii. bioinformatics, 27(8):1185-1186, 2011. [doi]

Poster: Analysis of gene ranking algorithms with extraction of relevant biomedical concepts from PubMed publicationsSimon Kocbek, Rune Sætre, Gregor Stiglic, Jin-Dong Kim, Igor Pernek, Yoshimasa Tsuruoka, Peter Kokol, Sophia Ananiadou, Jun-ichi Tsujii. iccabs 2011: 249 [doi]

Computational Linguistics and Natural Language ProcessingJun-ichi Tsujii. cicling 2011: 52-67 [doi]

Discovering and visualizing indirect associations between biomedical conceptsYoshimasa Tsuruoka, Makoto Miwa, Kaisei Hamamoto, Jun-ichi Tsujii, Sophia Ananiadou. bioinformatics, 27(13):111-119, 2011. [doi]

Effective Use of Function Words for Rule Generalization in Forest-Based TranslationXianchao Wu, Takuya Matsuzaki, Jun-ichi Tsujii. acl 2011: 22-31 [doi]

A Collaborative Annotation between Human Annotators and a Statistical ParserShun ya Iwasawa, Hiroki Hanaoka, Takuya Matsuzaki, Yusuke Miyao, Jun-ichi Tsujii. acllaw 2011: 56-64 [doi]

2010

Robust Measurement and Comparison of Context Similarity for Finding Translation PairsDaniel Andrade, Tetsuya Nasukawa, Jun-ichi Tsujii. COLING 2010: 19-27 [doi]

Complex event extraction at PubMed scaleJari Björne, Filip Ginter, Sampo Pyysalo, Jun-ichi Tsujii, Tapio Salakoski. bioinformatics, 26(12):382-390, 2010. [doi]

A Japanese Particle Corpus Built by Example-Based AnnotationHiroki Hanaoka, Hideki Mima, Jun-ichi Tsujii. lrec 2010: [doi]

Text mining meets workflow: linking U-Compare with TavernaYoshinobu Kano, Paul Dobson, Mio Nakanishi, Jun-ichi Tsujii, Sophia Ananiadou. bioinformatics, 26(19):2486-2487, 2010. [doi]

U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource LibraryYoshinobu Kano, Ruben Dorado, Luke McCrohon, Sophia Ananiadou, Jun-ichi Tsujii. lrec 2010: [doi]

PathText: a text mining integrator for biological pathway visualizationsBrian Kemper, Takuya Matsuzaki, Yukiko Matsuoka, Yoshimasa Tsuruoka, Hiroaki Kitano, Sophia Ananiadou, Jun-ichi Tsujii. bioinformatics, 26(12):374-381, 2010. [doi]

Evaluating Dependency Representations for Event ExtractionMakoto Miwa, Sampo Pyysalo, Tadayoshi Hara, Jun-ichi Tsujii. COLING 2010: 779-787 [doi]

Entity-Focused Sentence Simplification for Relation ExtractionMakoto Miwa, Rune Sætre, Yusuke Miyao, Jun-ichi Tsujii. COLING 2010: 788-796 [doi]

Event Extraction with Complex Event Classification Using Rich FeaturesMakoto Miwa, Rune Sætre, Jin-Dong Kim, Jun-ichi Tsujii. jbcb, 8(1):131-146, 2010. [doi]

Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense DisambiguationTingting Mu, Xinglong Wang, Jun-ichi Tsujii, Sophia Ananiadou. COLING 2010: 851-859 [doi]

A Re-Evaluation of Biomedical Named Entity-Term RelationsTomoko Ohta, Sampo Pyysalo, Jin-Dong Kim, Jun-ichi Tsujii. jbcb, 8(5):917-928, 2010. [doi]

Simple and Efficient Algorithm for Approximate Dictionary MatchingNaoaki Okazaki, Jun-ichi Tsujii. COLING 2010: 851-859 [doi]

Building a high-quality sense inventory for improved abbreviation disambiguationNaoaki Okazaki, Sophia Ananiadou, Jun-ichi Tsujii. bioinformatics, 26(9):1246-1253, 2010. [doi]

Extracting Protein Interactions from Text with the Unified AkaneRE Event Extraction SystemRune Sætre, Kazuhiro Yoshida, Makoto Miwa, Takuya Matsuzaki, Yoshinobu Kano, Jun-ichi Tsujii. tcbb, 7(3):442-453, 2010. [doi]

Design and Implementation of GXP Make - A Workflow System Based on MakeKenjiro Taura, Takuya Matsuzaki, Makoto Miwa, Yoshikazu Kamoshida, Daisaku Yokoyama, Nan Dun, Takeshi Shibata, Choi Sung Jun, Jun-ichi Tsujii. eScience 2010: 214-221 [doi]

Disambiguating the species of biomedical named entities using natural language parsersXinglong Wang, Jun-ichi Tsujii, Sophia Ananiadou. bioinformatics, 26(5):661-667, 2010. [doi]

Improving the Inter-Corpora Compatibility for protein AnnotationsYue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Tomoko Ohta, Jun-ichi Tsujii. jbcb, 8(5):901-916, 2010. [doi]

Fine-Grained Tree-to-String Translation Rule ExtractionXianchao Wu, Takuya Matsuzaki, Jun-ichi Tsujii. acl 2010: 325-334 [doi]

Improve syntax-based translation using deep syntactic structuresXianchao Wu, Takuya Matsuzaki, Jun-ichi Tsujii. mt, 24(2):141-157, 2010. [doi]

Semi-automatically Developing Chinese HPSG Grammar from the Penn Chinese Treebank for Deep ParsingKun Yu, Yusuke Miyao, Xiangli Wang, Takuya Matsuzaki, Jun-ichi Tsujii. COLING 2010: 1417-1425 [doi]

Forest-guided Supertagger TrainingYao-zhong Zhang, Takuya Matsuzaki, Jun-ichi Tsujii. COLING 2010: 1281-1289 [doi]

A Simple Approach for HPSG Supertagging Using Dependency InformationYao-zhong Zhang, Takuya Matsuzaki, Jun-ichi Tsujii. naacl 2009: 645-648 [doi]

2009

Hozumi TanakaTimothy Baldwin, Takenobu Tokunaga, Jun-ichi Tsujii. coling, 35(4):475-481, 2009. [doi]

A Novel Word Segmentation Approach for Written Languages with Word Boundary MarkersHan-Cheol Cho, Do-Gil Lee, Jung-Tae Lee, Pontus Stenetorp, Jun-ichi Tsujii, Hae-Chang Rim. acl 2009: 29-32 [doi]

Effective Analysis of Causes and Inter-dependencies of Parsing ErrorsTadayoshi Hara, Yusuke Miyao, Jun-ichi Tsujii. iwpt 2009: 180-191 [doi]

Descriptive and Empirical Approaches to Capturing Underlying Dependencies among Parsing ErrorsTadayoshi Hara, Yusuke Miyao, Jun-ichi Tsujii. emnlp 2009: 1162-1171 [doi]

U-Compare: share and compare text mining tools with UIMAYoshinobu Kano, William A. Baumgartner Jr., Luke McCrohon, Sophia Ananiadou, K. Bretonnel Cohen, Lawrence Hunter, Jun-ichi Tsujii. bioinformatics, 25(15):1997-1998, 2009. [doi]

Opinion classification with tree kernel SVM using linguistic modality analysisTakeshi S. Kobayakawa, Tadashi Kumano, Hideki Tanaka, Naoaki Okazaki, Jin-Dong Kim, Jun-ichi Tsujii. CIKM 2009: 1791-1794 [doi]

Tag-Annotated Text Search Using Extended Region AlgebraKatsuya Masuda, Jun-ichi Tsujii. ieicet, 92-D(12):2369-2377, 2009. [doi]

A Comparative Study on Generalization of Semantic Roles in FrameNetYuichiro Matsubayashi, Naoaki Okazaki, Jun-ichi Tsujii. acl 2009: 19-27 [doi]

A Rich Feature Vector for Protein-Protein Interaction Extraction from Multiple CorporaMakoto Miwa, Rune Sætre, Yusuke Miyao, Jun-ichi Tsujii. emnlp 2009: 121-130 [doi]

Protein-protein interaction extraction by leveraging multiple kernels and parsersMakoto Miwa, Rune Sætre, Yusuke Miyao, Jun-ichi Tsujii. ijmi, 78(12):39-46, 2009. [doi]

Supervised Learning of a Probabilistic Lexicon of Verb Semantic ClassesYusuke Miyao, Jun-ichi Tsujii. emnlp 2009: 1328-1337 [doi]

Evaluating contributions of natural language parsers to protein-protein interaction extractionYusuke Miyao, Kenji Sagae, Rune Sætre, Takuya Matsuzaki, Jun-ichi Tsujii. bioinformatics, 25(3):394-400, 2009. [doi]

Text Categorization with All Substring FeaturesDaisuke Okanohara, Jun-ichi Tsujii. sdm 2009: 838-846 [doi]

Learning Combination Features with L1 RegularizationDaisuke Okanohara, Jun-ichi Tsujii. naacl 2009: 97-100 [doi]

Sequential Labeling with Latent Variables: An Exact Inference Algorithm and its Efficient ApproximationXu Sun, Jun-ichi Tsujii. eacl 2009: 772-780 [doi]

Robust Approach to Abbreviating Terms: A Discriminative Latent Variable Model with Global InformationXu Sun, Naoaki Okazaki, Jun-ichi Tsujii. acl 2009: 905-913 [doi]

A Discriminative Latent Variable Chinese Segmenter with Hybrid Word/Character InformationXu Sun, Yao-zhong Zhang, Takuya Matsuzaki, Yoshimasa Tsuruoka, Jun-ichi Tsujii. naacl 2009: 56-64 [doi]

Latent Variable Perceptron Algorithm for Structured ClassificationXu Sun, Takuya Matsuzaki, Daisuke Okanohara, Jun-ichi Tsujii. IJCAI 2009: 1236-1242 [doi]

A Chinese-Japanese Lexical Machine Translation through a Pivot LanguageTakashi Tsunakawa, Naoaki Okazaki, Xiao Liu, Jun-ichi Tsujii. talip, 8(2), 2009. [doi]

Fast Full Parsing by Linear-Chain Conditional Random FieldsYoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Ananiadou. eacl 2009: 790-798 [doi]

Stochastic Gradient Descent Training for L1-regularized Log-linear Models with Cumulative PenaltyYoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Ananiadou. acl 2009: 477-485 [doi]

Evaluating Contribution of Deep Syntactic Information to Shallow Semantic AnalysisSumire Uematsu, Jun-ichi Tsujii. iwpt 2009: 85-88 [doi]

Classifying Relations for Biomedical Named Entity DisambiguationXinglong Wang, Jun-ichi Tsujii, Sophia Ananiadou. emnlp 2009: 1513-1522 [doi]

Investigating heterogeneous protein annotations toward cross-corpora utilizationYue Wang, Jin-Dong Kim, Rune Sætre, Sampo Pyysalo, Jun-ichi Tsujii. bmcbi, 10:403, 2009. [doi]

Semi-Supervised Lexicon Mining from Parenthetical Expressions in Monolingual Web PagesXianchao Wu, Naoaki Okazaki, Jun-ichi Tsujii. naacl 2009: 424-432 [doi]

Extracting Bilingual Dictionary from Comparable Corpora with Dependency HeterogeneityKun Yu, Jun-ichi Tsujii. naacl 2009: 121-124 [doi]

HPSG Supertagging: A Sequence Labeling ViewYao-zhong Zhang, Takuya Matsuzaki, Jun-ichi Tsujii. iwpt 2009: 210-213 [doi]

2008

Themes in biomedical natural language processing: BioNLP08Dina Demner-Fushman, Sophia Ananiadou, K. Bretonnel Cohen, John Pestian, Jun-ichi Tsujii, Bonnie L. Webber. bmcbi, 9(S-11), 2008. [doi]

Word Sense Disambiguation for All Words using Tree-Structured Conditional Random FieldsJun Hatori, Yusuke Miyao, Jun-ichi Tsujii. COLING 2008: 43-46 [doi]

Filling the Gaps Between Tools and Users: A Tool Comparator, Using Protein-Protein Interactions as an ExampleYoshinobu Kano, Ngan Nguyen, Rune Sætre, Kazuhiro Yoshida, Yusuke Miyao, Yoshimasa Tsuruoka, Yuichiro Matsubayashi, Sophia Ananiadou, Jun-ichi Tsujii. psb 2008: 616-627 [doi]

From Text to Pathway: Corpus Annotation for Knowledge Acquisition from Biomedical LiteratureJin-Dong Kim, Tomoko Ohta, Kanae Oda, Jun-ichi Tsujii. apbc 2008: 165-176 [doi]

Corpus annotation for mining biomedical events from literatureJin-Dong Kim, Tomoko Ohta, Jun-ichi Tsujii. bmcbi, 9, 2008. [doi]

Nested region algebra extended with variables for tag-annotated text searchKatsuya Masuda, Jun-ichi Tsujii. CIKM 2008: 1349-1350 [doi]

Comparative Parser Performance Analysis across Grammar Frameworks through Automatic Tree Conversion using Synchronous GrammarsTakuya Matsuzaki, Jun-ichi Tsujii. COLING 2008: 545-552 [doi]

Exact Inference for Multi-label Classification using Sparse Graphical ModelsYusuke Miyao, Jun-ichi Tsujii. COLING 2008: 63-66 [doi]

Feature Forest Models for Probabilistic HPSG ParsingYusuke Miyao, Jun-ichi Tsujii. coling, 34(1):35-80, 2008. [doi]

Task-oriented Evaluation of Syntactic Parsers and Their RepresentationsYusuke Miyao, Rune Sætre, Kenji Sagae, Takuya Matsuzaki, Jun-ichi Tsujii. acl 2008: 46-54 [doi]

Challenges in Pronoun Resolution System for Biomedical TextNgan Nguyen, Jin-Dong Kim, Jun-ichi Tsujii. lrec 2008: [doi]

Kleio: a knowledge-enriched information retrieval system for biologyChikashi Nobata, Philip Cotter, Naoaki Okazaki, Brian Rea, Yutaka Sasaki, Yoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Ananiadou. sigir 2008: 787-788 [doi]

New challenges for text mining: mapping between text and manually curated pathwaysKanae Oda, Jin-Dong Kim, Tomoko Ohta, Daisuke Okanohara, Takuya Matsuzaki, Yuka Tateisi, Jun-ichi Tsujii. bmcbi, 9(S-3), 2008. [doi]

A Discriminative Alignment Model for Abbreviation RecognitionNaoaki Okazaki, Sophia Ananiadou, Jun-ichi Tsujii. COLING 2008: 657-664 [doi]

A Discriminative Candidate Generator for String TransformationsNaoaki Okazaki, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun-ichi Tsujii. emnlp 2008: 447-456 [doi]

Shift-Reduce Dependency DAG ParsingKenji Sagae, Jun-ichi Tsujii. COLING 2008: 753-760 [doi]

Coreference Resolution in Biomedical Texts: a Machine Learning ApproachJian Su, Xiaofeng Yang, Huaqing Hong, Yuka Tateisi, Jun-ichi Tsujii. Dagstuhl 2008: [doi]

Modeling Latent-Dynamic in Shallow Parsing: A Latent Conditional Model with Imrpoved InferenceXu Sun, Louis-Philippe Morency, Daisuke Okanohara, Yoshimasa Tsuruoka, Jun-ichi Tsujii. COLING 2008: 841-848 [doi]

Connecting Text Mining and Pathways using the PathText ResourceRune Sætre, Brian Kemper, Kanae Oda, Naoaki Okazaki, Yukiko Matsuoka, Norihiro Kikuchi, Hiroaki Kitano, Yoshimasa Tsuruoka, Sophia Ananiadou, Jun-ichi Tsujii. lrec 2008: [doi]

GENIA-GR: a Grammatical Relation Corpus for Parser Evaluation in the Biomedical DomainYuka Tateisi, Yusuke Miyao, Kenji Sagae, Jun-ichi Tsujii. lrec 2008: [doi]

Building Bilingual Lexicons using Lexical Translation Probabilities via Pivot LanguagesTakashi Tsunakawa, Naoaki Okazaki, Jun-ichi Tsujii. lrec 2008: [doi]

Building a Bilingual Lexicon Using Phrase-based Statistical Machine Translation via a Pivot LanguageTakashi Tsunakawa, Naoaki Okazaki, Jun-ichi Tsujii. COLING 2008: 127-130 [doi]

Accelerating the annotation of sparse named entities by dynamic sentence selectionYoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Ananiadou. bmcbi, 9(S-11), 2008. [doi]

FACTA: a text search engine for finding associated biomedical conceptsYoshimasa Tsuruoka, Jun-ichi Tsujii, Sophia Ananiadou. bioinformatics, 24(21):2559-2560, 2008. [doi]

2007

Efficient HPSG Parsing with Supertagging and CFG-FilteringTakuya Matsuzaki, Yusuke Miyao, Jun-ichi Tsujii. IJCAI 2007: 1671-1676 [doi]

A discriminative language model with pseudo-negative samplesDaisuke Okanohara, Jun-ichi Tsujii. acl 2007: [doi]

HPSG Parsing with Shallow Dependency ConstraintsKenji Sagae, Yusuke Miyao, Jun-ichi Tsujii. acl 2007: [doi]

Dependency Parsing and Domain Adaptation with LR Models and Parser EnsemblesKenji Sagae, Jun-ichi Tsujii. emnlp 2007: 1044-1050 [doi]

Syntactic Features for Protein-Protein Interaction ExtractionRune Sætre, Kenji Sagae, Jun-ichi Tsujii. lbm 2008: [doi]

Learning string similarity measures for gene/protein name dictionary look-up using logistic regressionYoshimasa Tsuruoka, John McNaught, Jun-ichi Tsujii, Sophia Ananiadou. bioinformatics, 23(20):2768-2774, 2007. [doi]

Ambiguous Part-of-Speech Tagging for Improving Accuracy and Domain Portability of Syntactic ParsersKazuhiro Yoshida, Yoshimasa Tsuruoka, Yusuke Miyao, Jun-ichi Tsujii. IJCAI 2007: 1783-1788 [doi]

2006

Automatic recognition of topic-classified relations between prostate cancer and genes using MEDLINE abstractsHong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun-ichi Tsujii. bmcbi, 7(S-3), 2006. [doi]

Extraction of Gene-Disease Relations from Medline Using Domain Dictionaries and Machine LearningHong-Woo Chun, Yoshimasa Tsuruoka, Jin-Dong Kim, Rie Shiba, Naoki Nagata, Teruyoshi Hishiki, Jun-ichi Tsujii. psb 2006: 4-15 [doi]

Semantic Retrieval for the Accurate Identification of Relational Concepts in Massive TextbasesYusuke Miyao, Tomoko Ohta, Katsuya Masuda, Yoshimasa Tsuruoka, Kazuhiro Yoshida, Takashi Ninomiya, Jun-ichi Tsujii. acl 2006: [doi]

Extremely Lexicalized Models for Accurate and Fast HPSG ParsingTakashi Ninomiya, Takuya Matsuzaki, Yoshimasa Tsuruoka, Yusuke Miyao, Jun-ichi Tsujii. emnlp 2006: 155-163 [doi]

An Intelligent Search Engine and GUI-based Efficient MEDLINE Search Tool Based on Deep Syntactic ParsingTomoko Ohta, Yusuke Miyao, Takashi Ninomiya, Yoshimasa Tsuruoka, Akane Yakushiji, Katsuya Masuda, Jumpei Takeuchi, Kazuhiro Yoshida, Tadayoshi Hara, Jin-Dong Kim, Yuka Tateisi, Jun-ichi Tsujii. acl 2006: [doi]

Improving the Scalability of Semi-Markov Conditional Random Fields for Named Entity RecognitionDaisuke Okanohara, Yusuke Miyao, Yoshimasa Tsuruoka, Jun-ichi Tsujii. acl 2006: [doi]

Translating HPSG-Style Outputs of a Robust Parser into Typed Dynamic LogicManabu Sato, Daisuke Bekki, Yusuke Miyao, Jun-ichi Tsujii. acl 2006: [doi]

Trimming CFG Parse Trees for Sentence Compression Using Machine Learning ApproachesYuya Unno, Takashi Ninomiya, Yusuke Miyao, Jun-ichi Tsujii. acl 2006: [doi]

Automatic Construction of Predicate-argument Structure Patterns for Biomedical Information ExtractionAkane Yakushiji, Yusuke Miyao, Tomoko Ohta, Yuka Tateisi, Jun-ichi Tsujii. emnlp 2006: 284-292 [doi]

2005

Maximum Entropy Models with Inequality Constraints: A Case Study on Text CategorizationJun ichi Kazama, Jun-ichi Tsujii. ml, 60(1-3):159-194, 2005. [doi]

Assigning Polarity Scores to Reviews Using Machine Learning TechniquesDaisuke Okanohara, Jun-ichi Tsujii. ijcnlp 2005: 314-325 [doi]

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