Journal: Journal of Computational Biology

Volume 29, Issue 2

91 -- 0Jian Peng. RECOMB 2021 Special Issue
92 -- 105Lupeng Kong, Fusong Ju, Wei-Mou Zheng, Jianwei Zhu, Shiwei Sun, Jinbo Xu, Dongbo Bu. ProALIGN: Directly Learning Alignments for Protein Structure Prediction via Exploiting Context-Specific Alignment Motifs
106 -- 120Yuxuan Du, Sarah M. Laperriere, Jed A. Fuhrman, Fengzhu Sun. Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression
121 -- 139Hongyu Zheng, Cong Ma, Carl Kingsford. Deriving Ranges of Optimal Estimated Transcript Expression due to Nonidentifiability
140 -- 154Yoshihiro Shibuya, Djamal Belazzougui, Gregory Kucherov. Set-Min Sketch: A Probabilistic Map for Power-Law Distributions with Application to k-Mer Annotation
155 -- 168Antonio Blanca, Robert S. Harris, David Koslicki, Paul Medvedev. The Statistics of k-mers from a Sequence Undergoing a Simple Mutation Process Without Spurious Matches
169 -- 187Massimiliano Rossi 0001, Marco Oliva, Ben Langmead, Travis Gagie, Christina Boucher. MONI: A Pangenomic Index for Finding Maximal Exact Matches
188 -- 194Massimiliano Rossi 0001, Marco Oliva, Paola Bonizzoni, Ben Langmead, Travis Gagie, Christina Boucher. Finding Maximal Exact Matches Using the r-Index
195 -- 211Jim Shaw, Yun William Yu. flopp: Extremely Fast Long-Read Polyploid Haplotype Phasing by Uniform Tree Partitioning