Journal: Neuroinformatics

Volume 23, Issue 4

47 -- 0Mark P. McAvoy, Lei Liu 0004, Ruiwen Zhou, Benjamin A. Philip. Reducing Inter-Individual Differences in Task fMRI Preprocessing with OGRE (One-Step General Registration and Extraction) Preprocessing
48 -- 0Eugen-Richard Ardelean, Raluca Portase. A Study of Non-Linear Manifold Feature Extraction in Spike Sorting
49 -- 0Rishikesh V. Phatangare, Mark A. Eckert, Li Luo, Kenneth I. Vaden Jr., James Z. Wang 0002. Dyslexia Data Consortium: A Comprehensive Platform for Neuroimaging Data Sharing, Analysis, and Advanced Research in Dyslexia
50 -- 0Meltem Kurt Pehlivanoglu, Nur Banu Albayrak, Deniz Karhan, Ihsan Dogan. Towards Robust Brain Midline Shift Detection: A YOLO-Based 3D Slicer Extension with a Novel Dataset
51 -- 0Eugen-Richard Ardelean, Raluca-Laura Portase. A Study of Deep Clustering in Spike Sorting
52 -- 0Julia Kropiunig, Øystein Sørensen. Gaining Brain Insights by Tapping into the Black Box: Linking Structural MRI Features to Age and Cognition using Shapley-Based Interpretation Methods
53 -- 0Francesco Carbone, Toma Spiriev, Martin Trandzhiev, Michael Wolf-Vollenbröker, Kay M. Körner, Andrea Steuwe, Matteo de Notaris, Vladimir Nakov, Jan F. Cornelius. Workflow for the Creation of 3D Stereoscopic Models of Supra- and Infratentorial Brain Venous Anatomy and their Integration in a Virtual Reality Environment
54 -- 0Orhun Utku Aydin, Alexander Koch 0007, Adam Hilbert, Jana Rieger, Felix Lohrke, Fujimaro Ishida, Satoru Tanioka, Dietmar Frey. RELICT-NI: Replica Detection in Synthetic Neuroimaging - A Study on Noncontrast CT and Time-of-Flight MRA
55 -- 0Eren Ogut. 3D Morphometric and Computational Modeling of the Human Fasciola Cinerea: A Hidden Gate of Memory Networks
56 -- 0Somayeh Mahmouie, Mehrdad Saviz, Golnaz Baghdadi, Farzad Towhidkhah. Optimizing Theta Burst Stimulation Protocols: A Computational Exploration of Novel Alpha-Beta and Alpha-Gamma Frequency Couplings
57 -- 0Allan Falconi-Souto, Rodrigo M. Cabral-Carvalho, André Fujita, João Ricardo Sato. Inferences on the Watts-Strogatz Model: A Study on Brain Functional Connectivity
58 -- 0Ellen McMullen, Miguel de la Flor, Gemunu Gunaratne, Jason C. O'Connor, Gregg Roman. opynfield: An Open-Source Python Package for the Analysis of Open Field Exploration Data

Volume 23, Issue 3

35 -- 0Gregoris A. Orphanides, Christoforos Demosthenous, Ariadni Georgianakis, Vasilis Stylianides, Konstantinos Antoniou, Petros Kyriacou, Andreas A. Ioannides, Alberto Capurro. Cerebellar Micro Complex Model Using Histologic Boolean Mapping Simulates Adaptive Motor Control
36 -- 0John Darrell Van Horn, Emiliano Ricciardi. International Collaborations at the Intersection of Brain Sciences and Artificial Intelligence
37 -- 0Gregory A. Book, Vince D. Calhoun, Michael C. Stevens 0001, Godfrey D. Pearlson. Sharing Neuroimaging Data with Squirrel - A Relational Data Format to Store Raw to Analyzed Data and Everything in Between
38 -- 0Phani Paladugu, Rahul Kumar, Jahnavi Yelamanchi, Ethan Waisberg, Joshua Ong, Mouayad Masalkhi, Chirag Gowda, Ryung Lee, Dylan Amiri, Ram Jagadeesan, Nasif Zaman, Alireza Tavakkoli, Andrew G. Lee. Prediction of Cerebrospinal Fluid (CSF) Pressure with Generative Adversarial Network Synthetic Plasma-CSF Biomarker Pairing
39 -- 0Hongping Chen, Weihua Zhang, Yuchao Ma, Jiayun Ren, Di Zhong. The Impact of Gray Matter Structural Changes on Clinical Disability in Multiple Sclerosis: Voxel-and Surface-Based Analyses
40 -- 0Renato Paredes, Juan B. Cabral, Peggy Seriès. Scikit-NeuroMSI: A Generalized Framework for Modeling Multisensory Integration
43 -- 0Kristina M. Holton, Shi Yu Chan, Austin J. Brockmeier, Mei-Hua Hall. Latent Growth Models of Longitudinal Changes in Functional Connectivity during Early Stage Psychosis
44 -- 0Chi Zhang, Fei Liu, Yue Cheng, Wen Shen, Gaoyan Zhang. Identification of Mild Hepatic Encephalopathy Based on Multi-level Functional Connectivity Hypernetwork
45 -- 0Maria Mannone, Patrizia Ribino, Peppino Fazio, Norbert Marwan. Sketching a Space of Brain States
46 -- 0Fahad Almuqhim, Fahad Saeed. Overcoming Site Variability in Multisite fMRI Studies: an Autoencoder Framework for Enhanced Generalizability of Machine Learning Models

Volume 23, Issue 2

9 -- 0Yogesh Kumar 0002, Priya Bhardwaj, Supriya Shrivastav, Kapil Mehta. Predicting Paediatric Brain Disorders from MRI Images Using Advanced Deep Learning Techniques
10 -- 0Aline Beatriz Mello Rodrigues, Fabio Passetti, Ana Carolina Ramos Guimarães. Complementary Strategies to Identify Differentially Expressed Genes in the Choroid Plexus of Patients with Progressive Multiple Sclerosis
11 -- 0Stanley D. T. Pham, Cyrano Chatziantoniou, J. T. van Vliet, Rick J. van Tuijl, Marjolein Bulk, Mauro Costagli, Ludovic de Rochefort, Oliver Kraff, Mark E. Ladd, Kerrin Pine, Itamar Ronen, Jeroen C. W. Siero, Michela Tosetti, Arno Villringer, Geert Jan Biessels, Jaco J. M. Zwanenburg. Blood Flow Velocity Analysis in Cerebral Perforating Arteries on 7T 2D Phase Contrast MRI with an Open-Source Software Tool (SELMA)
12 -- 0K. Bhagyalaxmi, B. Dwarakanath. CDCG-UNet: Chaotic Optimization Assisted Brain Tumor Segmentation Based on Dilated Channel Gate Attention U-Net Model
13 -- 0Delfina Braggio, Hernán C. Külsgaard, Mariana Vallejo-Azar, Mariana Bendersky, Paula González, Lucía Alba-Ferrara, José Ignacio Orlando, Ignacio Larrabide. A Self-supervised Deep Learning Model for Diagonal Sulcus Detection with Limited Labeled Data
14 -- 0Ting-Wei Wang, Jia-Sheng Hong, Wei-Kai Lee, Yi-Hui Lin, Huai-Che Yang, Cheng-Chia Lee, Hung-Chieh Chen, Hsiu-Mei Wu, Weir Chiang You, Yu-Te Wu. Performance of Convolutional Neural Network Models in Meningioma Segmentation in Magnetic Resonance Imaging: A Systematic Review and Meta-Analysis
15 -- 0Yuhao Liu, Renling Zou, Liang Zhao, Linpeng Jin, Xiufang Hu, Xuezhi Yin. Simulation Study of Envelope Wave Electrical Nerve Stimulation Based on a Real Head Model
16 -- 0Ta-Shun Su, Fabian Kloosterman. NeuroCarto: A Toolkit for Building Custom Read-out Channel Maps for High Electrode-count Neural Probes
17 -- 0Natalia Filimonova, Maria Specovius-Neugebauer, Elfriede Friedmann. Determination of the Time-frequency Features for Impulse Components in EEG Signals
18 -- 0Asif Mehmood, Ayesha Ilyas, Hajira Ilyas. Cardiac Heterogeneity Prediction by Cardio-Neural Network Simulation
19 -- 0Zahra Rabiei, Hussain Montazery Kordy. Generalized Coupled Matrix Tensor Factorization Method Based on Normalized Mutual Information for Simultaneous EEG-fMRI Data Analysis
20 -- 0Roberto Barumerli, Piotr Majdak. FrAMBI: A Software Framework for Auditory Modeling Based on Bayesian Inference
22 -- 0Rahul Kumar, Ethan Waisberg, Joshua Ong, Phani Paladugu, Dylan Amiri, Ram Jagadeesan. Overcoming Neuroanatomical Mapping and Computational Barriers in Human Brain Synaptic Architecture
23 -- 0Pantelis Antonoudiou, Trina Basu, Jamie Maguire. SeizyML: An Application for Semi-Automated Seizure Detection Using Interpretable Machine Learning Models
24 -- 0Giusy Pizzirusso, Simon Sundström, Luis Enrique Arroyo-Garcia. Efficient, Automatic, and Reproducible Patch Clamp Data Analysis with "Auto ANT", a User-Friendly Interface for Batch Analysis of Patch Clamp Recordings
25 -- 0Hasita V. Nalluri, Shantelle A. Graff, Dragan Maric, John D. Heiss. Optimizing Colocalized Cell Counting Using Automated and Semiautomated Methods
26 -- 0Nicholas J. Kim, Nahian F. Chowdhury, Kenneth H. Buetow, Paul M. Thompson, Andrei Irimia. 1-Weighted MRI Gray Matter-White Matter Intensity Contrast
27 -- 0Jong-eun Lee, Kyoungseob Byeon, Sunghun Kim, Bo-yong Park, Hyunjin Park. Revealing the Multivariate Associations Between Autistic Traits and Principal Functional Connectome
28 -- 0Zoutao Zhang, Lingyi Cai, Wenwei Li, Hui Gong, Anan Li, Zhao Feng. SlicesMapi: An Interactive Three-Dimensional Registration Method for Serial Histological Brain Slices
29 -- 0Eren Ogut. Mathematical and Dynamic Modeling of the Anatomical Localization of the Insula in the Brain
30 -- 0Pretheesh Kumar V. C, Pramod Pullarkat. Semi-automated Analysis of Beading in Degenerating Axons
31 -- 0Marlena Duda, Ashkan Faghiri, Aysenil Belger, Juan R. Bustillo, Judith M. Ford, Daniel H. Mathalon, Bryon A. Mueller, Godfrey D. Pearlson, Steven G. Potkin, Adrian Preda, Jing Sui, Theo G. M. van Erp, Vince D. Calhoun. Alterations in Gray Matter Structure Linked to Frequency-Specific Cortico-Subcortical Connectivity in Schizophrenia via Multimodal Data Fusion
32 -- 0Mariam Khayretdinova, Polina Pshonkovskaya, Ilya Zakharov, Timothy Adamovich, Andrey Kiryasov, Andrey Zhdanov, Alexey Shovkun. Predicting Placebo Responses Using EEG and Deep Convolutional Neural Networks: Correlations with Clinical Data Across Three Independent Datasets
33 -- 0Peter Rogelj. Estimation of Task-Related Dynamic Brain Connectivity via Data Inflation and Classification Model Explainability
34 -- 0Shiyue Su, Yicai Ning, Zijian Guo, Weifeng Yang, Manyun Zhu, Qilin Zhou, Xuan He. Classification of Major Depressive Disorder Using Graph Attention Mechanism with Multi-Site rs-fMRI Data

Volume 23, Issue 1

1 -- 0Gangliang Zhong, Fang Jin, Liang Ma, Yongfeng Yang, Baogui Zhang, Dan Cao, Jin Li, Nianming Zuo, Lingzhong Fan, Zhengyi Yang 0002, Tianzi Jiang. Stimulation Effects Mapping for Optimizing Coil Placement for Transcranial Magnetic Stimulation
1 -- 12Ting-Wei Wang, Jia-Sheng Hong, Wei-Kai Lee, Yi-Hui Lin, Huai-Che Yang, Cheng-Chia Lee, Hung-Chieh Chen, Hsiu-Mei Wu, Weir Chiang You, Yu-Te Wu. Performance of Convolutional Neural Network Models in Meningioma Segmentation in Magnetic Resonance Imaging: A Systematic Review and Meta-Analysis
1 -- 16Ta-Shun Su, Fabian Kloosterman. NeuroCarto: A Toolkit for Building Custom Read-out Channel Maps for High Electrode-count Neural Probes
1 -- 13Yuhao Liu, Renling Zou, Liang Zhao, Linpeng Jin, Xiufang Hu, Xuezhi Yin. Simulation Study of Envelope Wave Electrical Nerve Stimulation Based on a Real Head Model
1 -- 17Delfina Braggio, Hernán C. Külsgaard, Mariana Vallejo-Azar, Mariana Bendersky, Paula González, Lucía Alba-Ferrara, José Ignacio Orlando, Ignacio Larrabide. A Self-supervised Deep Learning Model for Diagonal Sulcus Detection with Limited Labeled Data
2 -- 0Reza Eghbali, Pierre Nedelec, David A. Weiss, Radhika Bhalerao, Long Xie, Jeffrey D. Rudie, Chunlei Liu 0004, Leo P. Sugrue, Andreas M. Rauschecker. Automated Lesion and Feature Extraction Pipeline for Brain MRIs with Interpretability
3 -- 0Adrien Berchet, Rémy Petkantchin, Henry Markram, Lida Kanari. Computational Generation of Long-range Axonal Morphologies
4 -- 0Taylor Bolt, Lucina Q. Uddin. "The Brain is...": A Survey of the Brain's Many Definitions
5 -- 0Anoek Strumane, Théo Lambert, Jan Aelterman, Danilo Babin, Gabriel Montaldo, Wilfried Philips, Clément Brunner, Alan Urban. Large Scale in vivo Acquisition, Segmentation and 3D Reconstruction of Cortical Vasculature using μDoppler Ultrasound Imaging
6 -- 0Enwen Zhu, Zhuojun Zou, Jianxian Li, Jipan Chen, Ao Chen, Naifei Zhao, Qiang Yuan, Caicai Liu, Xin Tang. Classification Prediction of Hydrocephalus After Intercerebral Haemorrhage Based on Machine Learning Approach
7 -- 0Miguel Guillén-Pujadas, David Alaminos, Emili Vizuete Luciano, José M. Merigó, John D. Van Horn. Twenty Years of Neuroinformatics: A Bibliometric Analysis
8 -- 0Luca Bernecker, Ellisiv B. Mathiesen, Tor Ingebrigtsen, Jørgen Isaksen, Liv-Hege Johnsen, Torgil Riise Vangberg. Patch-Wise Deep Learning Method for Intracranial Stenosis and Aneurysm Detection-the Tromsø Study