Journal: PLoS Computational Biology

Volume 12, Issue 9

0 -- 0Jinfang Zheng, Petras J. Kundrotas, Ilya A. Vakser, Shiyong Liu. Template-Based Modeling of Protein-RNA Interactions
0 -- 0Fabian Paul, Thomas R. Weikl. How to Distinguish Conformational Selection and Induced Fit Based on Chemical Relaxation Rates
0 -- 0Noam Auslander, Allon Wagner, Matthew A. Oberhardt, Eytan Ruppin. Data-Driven Metabolic Pathway Compositions Enhance Cancer Survival Prediction
0 -- 0Harwin de Vries, Albert P. M. Wagelmans, Epco Hasker, Crispin Lumbala, Pascal Lutumba, Sake J. de Vlas, Joris van de Klundert. Forecasting Human African Trypanosomiasis Prevalences from Population Screening Data Using Continuous Time Models
0 -- 0Michael Schellenberger Costa, Arne Weigenand, Hong-Viet Victor Ngo, Lisa Marshall, Jan Born, Thomas Martinetz, Jens Christian Claussen. A Thalamocortical Neural Mass Model of the EEG during NREM Sleep and Its Response to Auditory Stimulation
0 -- 0Yann S. Dufour, Sébastien Gillet, Nicholas W. Frankel, Douglas B. Weibel, Thierry Emonet. Direct Correlation between Motile Behavior and Protein Abundance in Single Cells
0 -- 0Florian C. Rieger, Peter Virnau. A Monte Carlo Study of Knots in Long Double-Stranded DNA Chains
0 -- 0Aleena M. Notary, Matthew J. Westacott, Thomas H. Hraha, Marina Pozzoli, Richard K. P. Benninger. Decreases in Gap Junction Coupling Recovers Ca2+ and Insulin Secretion in Neonatal Diabetes Mellitus, Dependent on Beta Cell Heterogeneity and Noise
0 -- 0Jeanette Prinz, Ingo Vogt, Gianluca Adornetto, Mónica Campillos. A Novel Drug-Mouse Phenotypic Similarity Method Detects Molecular Determinants of Drug Effects
0 -- 0Yann Guyot, Bart Smeets, Tim Odenthal, Ramesh Subramani, Frank P. Luyten, Herman Ramon, Ioannis Papantoniou, Liesbet Geris. Immersed Boundary Models for Quantifying Flow-Induced Mechanical Stimuli on Stem Cells Seeded on 3D Scaffolds in Perfusion Bioreactors
0 -- 0Rolf J. F. Ypma, Edward T. Bullmore. Statistical Analysis of Tract-Tracing Experiments Demonstrates a Dense, Complex Cortical Network in the Mouse
0 -- 0Edward Basso, Mamiko Arai, Yuri Dabaghian. Gamma Synchronization Influences Map Formation Time in a Topological Model of Spatial Learning
0 -- 0Patrick Fried, Máximo Sánchez-Aragón, Daniel Aguilar-Hidalgo, Birgitta Lehtinen, Fernando Casares, Dagmar Iber. A Model of the Spatio-temporal Dynamics of Drosophila Eye Disc Development
0 -- 0Lorenzo Marcucci, Takumi Washio, Toshio Yanagida. Including Thermal Fluctuations in Actomyosin Stable States Increases the Predicted Force per Motor and Macroscopic Efficiency in Muscle Modelling
0 -- 0Sheldon L. Reeves, Kelsey E. Fleming, Lin Zhang, Annalisa Scimemi. M-Track: A New Software for Automated Detection of Grooming Trajectories in Mice
0 -- 0Feixiong Cheng, James L. Murray, Junfei Zhao, Jinsong Sheng, Zhongming Zhao, Donald H. Rubin. Systems Biology-Based Investigation of Cellular Antiviral Drug Targets Identified by Gene-Trap Insertional Mutagenesis
0 -- 0Carolyn Zhang, Ryan Tsoi, Feilun Wu, Lingchong You. Processing Oscillatory Signals by Incoherent Feedforward Loops
0 -- 0Abibatou Mbodj, E. Hilary Gustafson, Lucia Ciglar, Guillaume Junion, Aitor González, Charles Girardot, Laurent Perrin, Eileen E. M. Furlong, Denis Thieffry. Qualitative Dynamical Modelling Can Formally Explain Mesoderm Specification and Predict Novel Developmental Phenotypes
0 -- 0Nicholas Cain, Ramakrishnan Iyer, Christof Koch, Stefan Mihalas. The Computational Properties of a Simplified Cortical Column Model
0 -- 0Yu-zhe Li, Ken Nakae, Shin Ishii, Honda Naoki. Uncertainty-Dependent Extinction of Fear Memory in an Amygdala-mPFC Neural Circuit Model
0 -- 0Nicola De Maio, Chieh-Hsi Wu, Daniel J. Wilson. SCOTTI: Efficient Reconstruction of Transmission within Outbreaks with the Structured Coalescent
0 -- 0Joby John, Jonathan B. Dingwell, Joseph P. Cusumano. Error Correction and the Structure of Inter-Trial Fluctuations in a Redundant Movement Task
0 -- 0Grant Gillary, Ernst Niebur. The Edge of Stability: Response Times and Delta Oscillations in Balanced Networks
0 -- 0Carlos S. N. Brito, Wulfram Gerstner. Nonlinear Hebbian Learning as a Unifying Principle in Receptive Field Formation
0 -- 0Lars Lau Rakêt, Britta Grimme, Gregor Schöner, Christian Igel, Bo Markussen. Separating Timing, Movement Conditions and Individual Differences in the Analysis of Human Movement
0 -- 0Kang He, You Liang, Farnaz Abdollahi, Moria F. Bittmann, Konrad P. Körding, Kunlin Wei. The Statistical Determinants of the Speed of Motor Learning
0 -- 0Aharon Azulay, Eyal Itskovits, Alon Zaslaver. The C. elegans Connectome Consists of Homogenous Circuits with Defined Functional Roles
0 -- 0William B. Ashworth, Nathan A. Davies, Ian David Lockhart Bogle. A Computational Model of Hepatic Energy Metabolism: Understanding Zonated Damage and Steatosis in NAFLD
0 -- 0Mark N. Read, Jacqueline Bailey, Jon Timmis, Tatyana Chtanova. Leukocyte Motility Models Assessed through Simulation and Multi-objective Optimization-Based Model Selection
0 -- 0Xiaokan Guo, James Q. Boedicker. The Contribution of High-Order Metabolic Interactions to the Global Activity of a Four-Species Microbial Community
0 -- 0Naveen K. Vaidya, Ruy M. Ribeiro, Alan S. Perelson, Anil Kumar. Modeling the Effects of Morphine on Simian Immunodeficiency Virus Dynamics
0 -- 0Eleni A. Kolokotroni, Dimitra D. Dionysiou, Christian Veith, Yoo-Jin Kim, Jörg Sabczynski, Astrid Franz, Aleksandar Grgic, Jan Palm, Rainer Bohle, Georgios S. Stamatakos. In Silico Oncology: Quantification of the In Vivo Antitumor Efficacy of Cisplatin-Based Doublet Therapy in Non-Small Cell Lung Cancer (NSCLC) through a Multiscale Mechanistic Model
0 -- 0Laura Paparelli, Nikky Corthout, Benjamin Pavie, Devin L. Wakefield, Ragna Sannerud, Tijana Jovanovic-Talisman, Wim Annaert, Sebastian Munck. Inhomogeneity Based Characterization of Distribution Patterns on the Plasma Membrane
0 -- 0Sarah Feldt Muldoon, Fabio Pasqualetti, Shi Gu, Matthew Cieslak, Scott T. Grafton, Jean M. Vettel, Danielle S. Bassett. Stimulation-Based Control of Dynamic Brain Networks
0 -- 0John G. Mikhael, Rafal Bogacz. Learning Reward Uncertainty in the Basal Ganglia
0 -- 0Hao Chen, Mai Chan Lau, Michael Thomas Wong, Evan W. Newell, Michael Poidinger, Jinmiao Chen. Cytofkit: A Bioconductor Package for an Integrated Mass Cytometry Data Analysis Pipeline
0 -- 0Laurent Mesnard, Thangamani Muthukumar, Maren Burbach, Carol Li, Huimin Shang, Darshana Dadhania, John R. Lee, Vijay K. Sharma, Jenny Xiang, Caroline Suberbielle, Maryvonnick Carmagnat, Nacera Ouali, Eric Rondeau, John Friedewald, Michael M. Abecassis, Manikkam Suthanthiran, Fabien Campagne. Exome Sequencing and Prediction of Long-Term Kidney Allograft Function
0 -- 0Stuart R. Young, Bruce S. Gardiner, Arash Mehdizadeh, Jonas Rubenson, Brian R. Umberger, David W. Smith. Adaptive Remodeling of Achilles Tendon: A Multi-scale Computational Model
0 -- 0Maria Kogadeeva, Nicola Zamboni. SUMOFLUX: A Generalized Method for Targeted 13C Metabolic Flux Ratio Analysis
0 -- 0Anu G. Nair, Upinder S. Bhalla, Jeanette Hellgren Kotaleski. Role of DARPP-32 and ARPP-21 in the Emergence of Temporal Constraints on Striatal Calcium and Dopamine Integration
0 -- 0Shishi Luo, Jane A. Yu, Yun S. Song. Estimating Copy Number and Allelic Variation at the Immunoglobulin Heavy Chain Locus Using Short Reads
0 -- 0Alex D. Washburne, Joshua W. Burby, Daniel Lacker. Novel Covariance-Based Neutrality Test of Time-Series Data Reveals Asymmetries in Ecological and Economic Systems
0 -- 0John Platig, Peter J. Castaldi, Dawn L. DeMeo, John Quackenbush. Bipartite Community Structure of eQTLs