Journal: PLoS Computational Biology

Volume 13, Issue 12

0 -- 0. Correction: Dynamic Maternal Gradients Control Timing and Shift-Rates for Drosophila Gap Gene Expression
0 -- 0Andrea Tacchetti, Leyla Isik, Tomaso A. Poggio. Invariant recognition drives neural representations of action sequences
0 -- 0Patrick Meyer, Pallab Maity, Andre Burkovski, Julian Schwab, Christoph Müssel, Karmveer Singh, Filipa F. Ferreira, Linda Krug, Harald J. Maier, Meinhard Wlaschek, Thomas Wirth, Hans A. Kestler, Karin Scharffetter-Kochanek. A model of the onset of the senescence associated secretory phenotype after DNA damage induced senescence
0 -- 0Nawsad Alam, Oriel Goldstein, Bing Xia, Kathryn A. Porter, Dima Kozakov, Ora Schueler-Furman. High-resolution global peptide-protein docking using fragments-based PIPER-FlexPepDock
0 -- 0Xinxin Wang, Anders E. Carlsson. A master equation approach to actin polymerization applied to endocytosis in yeast
0 -- 0Dylan R. Muir, Patricia Molina-Luna, Morgane M. Roth, Fritjof Helmchen, Björn Kampa. Specific excitatory connectivity for feature integration in mouse primary visual cortex
0 -- 0Ye Henry Li, Dangna Li, Nikolay Samusik, Xiaowei Wang, Leying Guan, Garry P. Nolan, Wing Hung Wong. Scalable multi-sample single-cell data analysis by Partition-Assisted Clustering and Multiple Alignments of Networks
0 -- 0Rico Rueedi, Roger Mallol, Johannes Raffler, David Lamparter, Nele Friedrich, Peter Vollenweider, Gérard Waeber, Gabi Kastenmüller, Zoltán Kutalik, Sven Bergmann. Metabomatching: Using genetic association to identify metabolites in proton NMR spectroscopy
0 -- 0Austin E. Soplata, Michelle M. McCarthy, Jason Sherfey, Shane Lee, Patrick L. Purdon, Emery N. Brown, Nancy Kopell. Thalamocortical control of propofol phase-amplitude coupling
0 -- 0William M. McFadden, Patrick M. McCall, Margaret L. Gardel, Edwin M. Munro. Filament turnover tunes both force generation and dissipation to control long-range flows in a model actomyosin cortex
0 -- 0Oleksandr Ostrenko, Pietro Incardona, Rajesh Ramaswamy, Lutz Brusch, Ivo F. Sbalzarini. pSSAlib: The partial-propensity stochastic chemical network simulator
0 -- 0Bryan T. Weinstein, Maxim O. Lavrentovich, Wolfram Möbius, Andrew W. Murray, David R. Nelson. Genetic drift and selection in many-allele range expansions
0 -- 0Rebecca F. Alford, Andrew Leaver-Fay, Lynda Gonzales, Erin L. Dolan, Jeffrey J. Gray. A cyber-linked undergraduate research experience in computational biomolecular structure prediction and design
0 -- 0Nadav Ben-Shushan, Misha Tsodyks. Stabilizing patterns in time: Neural network approach
0 -- 0Zhengnan Huang, Hongjiu Zhang, Jonathan Boss, Stephen A. Goutman, Bhramar Mukherjee, Ivo D. Dinov, Yuanfang Guan. Complete hazard ranking to analyze right-censored data: An ALS survival study
0 -- 0Gábor Erdös, Tamás Szaniszló, Mátyás Pajkos, Borbála Hajdu-Soltész, Bence Kiss, Gábor Pál, László Nyitray, Zsuzsanna Dosztányi. Novel linear motif filtering protocol reveals the role of the LC8 dynein light chain in the Hippo pathway
0 -- 0James N. Ingram, Mohsen Sadeghi, J. Randall Flanagan, Daniel M. Wolpert. An error-tuned model for sensorimotor learning
0 -- 0Jinglin Li, Jens Peter Lindemann, Martin Egelhaaf. Local motion adaptation enhances the representation of spatial structure at EMD arrays
0 -- 0. Correction: Sequential inference as a mode of cognition and its correlates in fronto-parietal and hippocampal brain regions
0 -- 0Maria C. Quintero, Robert W. Putnam, Juan M. Cordovez. Theoretical perspectives on central chemosensitivity: CO2/H+-sensitive neurons in the locus coeruleus
0 -- 0Tom Dupré la Tour, Lucille Tallot, Laetitia Grabot, Valérie Doyère, Virginie van Wassenhove, Yves Grenier, Alexandre Gramfort. Non-linear auto-regressive models for cross-frequency coupling in neural time series
0 -- 0Amit Yashar, Rachel N. Denison. Feature reliability determines specificity and transfer of perceptual learning in orientation search
0 -- 0Crystal M. Botham, Joshua A. Arribere, Sky W. Brubaker, Kevin T. Beier. Ten simple rules for writing a career development award proposal
0 -- 0. Correction: Reading wild minds: A computational assay of Theory of Mind sophistication across seven primate species
0 -- 0Sanjay Sonney, Jeremy Leipzig, Marie T. Lott, Shiping Zhang, Vincent Procaccio, Douglas C. Wallace, Neal Sondheimer. Predicting the pathogenicity of novel variants in mitochondrial tRNA with MitoTIP
0 -- 0Thomas D. Gaddy, Qianhui Wu, Alyssa D. Arnheim, Stacey D. Finley. Mechanistic modeling quantifies the influence of tumor growth kinetics on the response to anti-angiogenic treatment
0 -- 0Kaitlin E. Frasier, Marie A. Roch, Melissa S. Soldevilla, Sean M. Wiggins, Lance P. Garrison, John A. Hildebrand. Automated classification of dolphin echolocation click types from the Gulf of Mexico
0 -- 0Vincent Jacob, Christelle Monsempès, Jean-Pierre Rospars, Jean-Baptiste Masson, Philippe Lucas. Olfactory coding in the turbulent realm
0 -- 0Xing Chen, Li Huang. LRSSLMDA: Laplacian Regularized Sparse Subspace Learning for MiRNA-Disease Association prediction
0 -- 0Takaho Tsuchiya, Masashi Fujii, Naoki Matsuda, Katsuyuki Kunida, Shinsuke Uda, Hiroyuki Kubota, Katsumi Konishi, Shinya Kuroda. System identification of signaling dependent gene expression with different time-scale data
0 -- 0Chieh Lo, Radu Marculescu. MPLasso: Inferring microbial association networks using prior microbial knowledge
0 -- 0Loan Huynh, Chris Neale, Régis Pomès, Hue Sun Chan. Molecular recognition and packing frustration in a helical protein
0 -- 0Siwei Wang, Alexander Borst, Noga Zaslavsky, Naftali Tishby, Idan Segev. Efficient encoding of motion is mediated by gap junctions in the fly visual system
0 -- 0. Correction: Signatures of criticality arise from random subsampling in simple population models
0 -- 0Go Ashida, Daniel J. Tollin, Jutta Kretzberg. Physiological models of the lateral superior olive
0 -- 0Diego A. Forero, Sandra Lopez-Leon, George P. Patrinos. Ten simple rules for international short-term research stays
0 -- 0Toru Niina, Giovanni B. Brandani, Cheng Tan, Shoji Takada. Sequence-dependent nucleosome sliding in rotation-coupled and uncoupled modes revealed by molecular simulations
0 -- 0Alexander Martynov, Konstantin Severinov, Iaroslav Ispolatov. Optimal number of spacers in CRISPR arrays
0 -- 0Christoph Baldow, Sebastian Salentin, Michael Schroeder 0001, Ingo Roeder, Ingmar Glauche. MAGPIE: Simplifying access and execution of computational models in the life sciences
0 -- 0. Correction: Identifying influential neighbors in animal flocking
0 -- 0Tsvetomira Radeva, Anna R. Dornhaus, Nancy A. Lynch, Radhika Nagpal, Hsin-Hao Su. Costs of task allocation with local feedback: Effects of colony size and extra workers in social insects and other multi-agent systems
0 -- 0Shyr-Shea Chang, Shenyinying Tu, Kyung In Baek, Andrew Pietersen, Yu-Hsiu Liu, Van M. Savage, Sheng-Ping L. Hwang, Tzung K. Hsiai, Marcus Roper. Optimal occlusion uniformly partitions red blood cells fluxes within a microvascular network