Journal: PLoS Computational Biology

Volume 13, Issue 5

0 -- 0Thomas O. Richardson, Jonas Liechti, Nathalie Stroeymeyt, Sebastian Bonhoeffer, Laurent Keller. Short-term activity cycles impede information transmission in ant colonies
0 -- 0Nicolás Tomasini, Paula Gabriela Ragone, Sébastien Gourbière, Juan Pablo Aparicio, Patricio Diosque. Epidemiological modeling of Trypanosoma cruzi: Low stercorarian transmission and failure of host adaptive immunity explain the frequency of mixed infections in humans
0 -- 0Gerald Hahn, Adrián Ponce-Alvarez, Cyril Monier, Giacomo Benvenuti, Arvind Kumar, Frédéric Chavane, Gustavo Deco, Yves Frégnac. Spontaneous cortical activity is transiently poised close to criticality
0 -- 0Alexander Franks, Edoardo M. Airoldi, Nikolai Slavov. Post-transcriptional regulation across human tissues
0 -- 0Björn A. Grüning, Eric Rasche, Boris Rebolledo-Jaramillo, Carl Eberhard, Torsten Houwaart, John Chilton, Nate Coraor, Rolf Backofen, James Taylor, Anton Nekrutenko. Jupyter and Galaxy: Easing entry barriers into complex data analyses for biomedical researchers
0 -- 0Jeffrey P. Nguyen, Ashley N. Linder, George S. Plummer, Joshua W. Shaevitz, Andrew M. Leifer. Automatically tracking neurons in a moving and deforming brain
0 -- 0Jin Hyun Ju, Sushila A. Shenoy, Ronald G. Crystal, Jason G. Mezey. An independent component analysis confounding factor correction framework for identifying broad impact expression quantitative trait loci
0 -- 0Yujiang Wang, Andrew J. Trevelyan, Antonio Valentín, Gonzalo Alarcón, Peter Neal Taylor, Marcus Kaiser. Mechanisms underlying different onset patterns of focal seizures
0 -- 0Tomi Suomi, Fatemeh Seyednasrollah, Maria K. Jaakkola, Thomas Faux, Laura L. Elo. ROTS: An R package for reproducibility-optimized statistical testing
0 -- 0Raphaël Mourad, Lang Li 0001, Olivier Cuvier. Uncovering direct and indirect molecular determinants of chromatin loops using a computational integrative approach
0 -- 0Benjamin Risse, Dimitri Berh, Nils Otto, Christian Klämbt, Xiaoyi Jiang 0001. FIMTrack: An open source tracking and locomotion analysis software for small animals
0 -- 0Mikhail Kolmogorov, Eamonn Kennedy, Zhuxin Dong, Gregory Timp, Pavel A. Pevzner. Single-molecule protein identification by sub-nanopore sensors
0 -- 0Yogi A. Patel, Ansel George, Alan D. Dorval II, John A. White, David J. Christini, Robert J. Butera. Hard real-time closed-loop electrophysiology with the Real-Time eXperiment Interface (RTXI)
0 -- 0Gabriel F. Dorlhiac, Clyde Fare, Jasper J. van Thor. PyLDM - An open source package for lifetime density analysis of time-resolved spectroscopic data
0 -- 0Thomas H. B. FitzGerald, Dorothea Hämmerer, Karl J. Friston, Shu-Chen Li, Raymond J. Dolan. Sequential inference as a mode of cognition and its correlates in fronto-parietal and hippocampal brain regions
0 -- 0Wesley P. Clawson, Nathaniel C. Wright, Ralf Wessel, Woodrow L. Shew. Adaptation towards scale-free dynamics improves cortical stimulus discrimination at the cost of reduced detection
0 -- 0Megan Yu, Yu-Min Kuo. Ten simple rules to make the most out of your undergraduate research career
0 -- 0Rodrigo D. Requião, Luiza Fernandes, Henrique José Araujo de Souza, Silvana Rossetto, Tatiana Domitrovic, Fernando L. Palhano. Protein charge distribution in proteomes and its impact on translation
0 -- 0Poppy Miller, Jonathan Marshall, Nigel French, Chris Jewell. sourceR: Classification and source attribution of infectious agents among heterogeneous populations
0 -- 0Rohan Lowe, Neil Shirley, Mark Bleackley, Stephen Dolan, Thomas Shafee. Transcriptomics technologies
0 -- 0Christopher M. Jakobson, Danielle Tullman-Ercek, Marilyn F. Slininger, Niall M. Mangan. A systems-level model reveals that 1, 2-Propanediol utilization microcompartments enhance pathway flux through intermediate sequestration
0 -- 0Eghbal A. Hosseini, Katrina P. Nguyen, Wilsaan M. Joiner. The decay of motor adaptation to novel movement dynamics reveals an asymmetry in the stability of motion state-dependent learning
0 -- 0Robert C. Jackson, Giovanni Y. Di Veroli, Siang-Boon Koh, Ian Goldlust, Frances M. Richards, Duncan I. Jodrell. Modelling of the cancer cell cycle as a tool for rational drug development: A systems pharmacology approach to cyclotherapy
0 -- 0Ali Nematbakhsh, Wenzhao Sun, Pavel A. Brodskiy, Aboutaleb Amiri, Cody Narciso, Zhiliang Xu, Jeremiah J. Zartman, Mark S. Alber. Multi-scale computational study of the mechanical regulation of cell mitotic rounding in epithelia
0 -- 0Luca Ambrogioni, Marcel A. J. van Gerven, Eric Maris. Dynamic decomposition of spatiotemporal neural signals
0 -- 0Samuel Demharter, Nicholas Pearce, Kylie Beattie, Isabel Frost, Jinwoo Leem, Alistair Martin, Robert Oppenheimer, Cristian Regep, Tammo Rukat, Alexander Skates, Nicola Trendel, David J. Gavaghan, Charlotte M. Deane, Bernhard Knapp. Ten simple rules for surviving an interdisciplinary PhD
0 -- 0Tad Dallas, Andrew W. Park, John M. Drake. Predicting cryptic links in host-parasite networks
0 -- 0Ying Li, Xueya Zhou, Zichao Zhai, Tingting Li. Co-occurring protein phosphorylation are functionally associated
0 -- 0Mikhail Shugay, Andrew R. Zaretsky, Dmitriy A. Shagin, Irina A. Shagina, Ivan A. Volchenkov, Andrew A. Shelenkov, Mikhail Y. Lebedin, Dmitriy V. Bagaev, Sergey A. Lukyanov, Dmitry M. Chudakov. MAGERI: Computational pipeline for molecular-barcoded targeted resequencing
0 -- 0Pierre Bonnin, Norbert Kern, Neil T. Young, Ian Stansfield, M. Carmen Romano. Novel mRNA-specific effects of ribosome drop-off on translation rate and polysome profile
0 -- 0Rita Bhui, Heather N. Hayenga. An agent-based model of leukocyte transendothelial migration during atherogenesis
0 -- 0Eugen Bauer, Johannes Zimmermann, Federico Baldini, Ines Thiele, Christoph Kaleta. BacArena: Individual-based metabolic modeling of heterogeneous microbes in complex communities
0 -- 0Philip E. Bourne, Jessica K. Polka, Ronald D. Vale, Robert Kiley. Ten simple rules to consider regarding preprint submission
0 -- 0Thaddeus Cybulski, Edward S. Boyden, George M. Church, Keith E. J. Tyo, Konrad P. Körding. Nucleotide-time alignment for molecular recorders
0 -- 0Semidán Robaina-Estévez, Zoran Nikoloski. On the effects of alternative optima in context-specific metabolic model predictions
0 -- 0Zachary R. Sailer, Michael J. Harms. High-order epistasis shapes evolutionary trajectories
0 -- 0Nimrod Shaham, Yoram Burak. Slow diffusive dynamics in a chaotic balanced neural network
0 -- 0Andreas Tuerk, Gregor Wiktorin, Serhat Güler. Mixture models reveal multiple positional bias types in RNA-Seq data and lead to accurate transcript concentration estimates
0 -- 0Silvan Quax, Ole Jensen, Paul H. E. Tiesinga. Top-down control of cortical gamma-band communication via pulvinar induced phase shifts in the alpha rhythm
0 -- 0Julie L. Chaney, Aaron Steele, Rory Carmichael, Anabel Rodriguez, Alicia T. Specht, Kim Ngo, Jun Li, Scott J. Emrich, Patricia L. Clark. Widespread position-specific conservation of synonymous rare codons within coding sequences
0 -- 0Yusuke Matsui, Atsushi Niida, Ryutaro Uchi, Koshi Mimori, Satoru Miyano, Teppei Shimamura. phyC: Clustering cancer evolutionary trees
0 -- 0William R. Holmes, Jinseok Park, Andre Levchenko, Leah Edelstein-Keshet. A mathematical model coupling polarity signaling to cell adhesion explains diverse cell migration patterns
0 -- 0Don Klinkenberg, Jantien A. Backer, Xavier Didelot, Caroline Colijn, Jacco Wallinga. Simultaneous inference of phylogenetic and transmission trees in infectious disease outbreaks
0 -- 0Siu Hung Joshua Chan, Margaret N. Simons, Costas D. Maranas. SteadyCom: Predicting microbial abundances while ensuring community stability
0 -- 0Florian Berger, A. J. Hudspeth. Chemomechanical regulation of myosin Ic cross-bridges: Deducing the elastic properties of an ensemble from single-molecule mechanisms
0 -- 0Veith Andreas Weilnhammer, Heiner Stuke, Guido Hesselmann, Philipp Sterzer, Katharina Schmack. A predictive coding account of bistable perception - a model-based fMRI study