Journal: PLoS Computational Biology

Volume 13, Issue 8

0 -- 0Quan Wang, Constantin A. Rothkopf, Jochen Triesch. A model of human motor sequence learning explains facilitation and interference effects based on spike-timing dependent plasticity
0 -- 0Idan Alter, Loren Gragert, Stephanie Fingerson, Martin Maiers, Yoram Louzoun. HLA class I haplotype diversity is consistent with selection for frequent existing haplotypes
0 -- 0Remo Monti, Iros Barozzi, Marco Osterwalder, Elizabeth Lee, Momoe Kato, Tyler H. Garvin, Ingrid Plajzer-Frick, Catherine S. Pickle, Jennifer A. Akiyama, Veena Afzal, Niko Beerenwinkel, Diane E. Dickel, Axel Visel, Len A. Pennacchio. Limb-Enhancer Genie: An accessible resource of accurate enhancer predictions in the developing limb
0 -- 0Philippe Gambette, Leo van Iersel, Mark Jones, Manuel Lafond, Fabio Pardi, Céline Scornavacca. Rearrangement moves on rooted phylogenetic networks
0 -- 0Eduardo A. Aponte, Dario Schöbi, Klaas E. Stephan, Jakob Heinzle. The Stochastic Early Reaction, Inhibition, and late Action (SERIA) model for antisaccades
0 -- 0Michal Bassani-Sternberg, Chloé Chong, Philippe Guillaume, Marthe Solleder, HuiSong Pak, Philippe O. Gannon, Lana E. Kandalaft, George Coukos, David Gfeller. Deciphering HLA-I motifs across HLA peptidomes improves neo-antigen predictions and identifies allostery regulating HLA specificity
0 -- 0Narimane Nekkab, Pascal Astagneau, Laura Temime, Pascal Crépey. Spread of hospital-acquired infections: A comparison of healthcare networks
0 -- 0Julia Fukuyama, Laurie Rumker, Kris Sankaran, Pratheepa Jeganathan, Les Dethlefsen, David A. Relman, Susan P. Holmes. Multidomain analyses of a longitudinal human microbiome intestinal cleanout perturbation experiment
0 -- 0Anna Cichonska, Balaguru Ravikumar, Elina Parri, Sanna Timonen, Tapio Pahikkala, Antti Airola, Krister Wennerberg, Juho Rousu, Tero Aittokallio. Computational-experimental approach to drug-target interaction mapping: A case study on kinase inhibitors
0 -- 0Peter J. Hellyer, Claudia Clopath, Angie A. Kehagia, Federico E. Turkheimer, Robert Leech. From homeostasis to behavior: Balanced activity in an exploration of embodied dynamic environmental-neural interaction
0 -- 0Lingfei Wang, Tom Michoel. Efficient and accurate causal inference with hidden confounders from genome-transcriptome variation data
0 -- 0Tjibbe Donker, Timo Smieszek, Katherine L. Henderson, Alan P. Johnson, A. Sarah Walker, Julie V. Robotham. Measuring distance through dense weighted networks: The case of hospital-associated pathogens
0 -- 0Alexander V. Maltsev, Victor A. Maltsev, Michael D. Stern. Stabilization of diastolic calcium signal via calcium pump regulation of complex local calcium releases and transient decay in a computational model of cardiac pacemaker cell with individual release channels
0 -- 0Toby P. Aicher, Dániel L. Barabási, Benjamin D. Harris, Ajay Nadig, Kaitlin L. Williams. Ten simple rules for getting the most out of a summer laboratory internship
0 -- 0Michael A. Colman, Christian Pinali, Andrew W. Trafford, Henggui Zhang, Ashraf Kitmitto. A computational model of spatio-temporal cardiac intracellular calcium handling with realistic structure and spatial flux distribution from sarcoplasmic reticulum and t-tubule reconstructions
0 -- 0Vickie Li, Santiago Herce Castañón, Joshua A. Solomon, Hildward Vandormael, Christopher Summerfield. Robust averaging protects decisions from noise in neural computations
0 -- 0Laura R. Emery, Sarah L. Morgan. The application of project-based learning in bioinformatics training
0 -- 0Matías A. Goldin, Gabriel B. Mindlin. Temperature manipulation of neuronal dynamics in a forebrain motor control nucleus
0 -- 0Johannes Friedrich, Weijian Yang, Daniel Soudry, Yu Mu, Misha Ahrens, Rafael Yuste, Darcy S. Peterka, Liam Paninski. Multi-scale approaches for high-speed imaging and analysis of large neural populations
0 -- 0Jinyuan Yan, Maxime Deforet, Kerry E. Boyle, Rayees Rahman, Raymond Liang, Chinweike Okegbe, Lars E. P. Dietrich, Weigang Qiu, João B. Xavier. Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network
0 -- 0Elsje Pienaar, Jansy Sarathy, Brendan Prideaux, Jillian Dietzold, Véronique Dartois, Denise E. Kirschner, Jennifer J. Linderman. Comparing efficacies of moxifloxacin, levofloxacin and gatifloxacin in tuberculosis granulomas using a multi-scale systems pharmacology approach
0 -- 0Vikranth R. Bejjanki, Rava Azeredo da Silveira, Jonathan D. Cohen, Nicholas B. Turk-Browne. Noise correlations in the human brain and their impact on pattern classification
0 -- 0Jairo A. Navarrete, Pablo Dartnell. Towards a category theory approach to analogy: Analyzing re-representation and acquisition of numerical knowledge
0 -- 0Christopher B. Massa, Angela M. Groves, Smita U. Jaggernauth, Debra L. Laskin, Andrew J. Gow. Histologic and biochemical alterations predict pulmonary mechanical dysfunction in aging mice with chronic lung inflammation
0 -- 0Lore Thaler, Galen M. Reich, Xinyu Zhang, Dinghe Wang, Graeme E. Smith, Tao Zeng 0001, Raja Syamsul Azmir Raja Abdullah, Mikhail Cherniakov, Christopher J. Baker, Daniel Kish, Michail Antoniou. Mouth-clicks used by blind expert human echolocators - signal description and model based signal synthesis
0 -- 0Grégory Dumont, Alexandre Payeur, André Longtin. A stochastic-field description of finite-size spiking neural networks
0 -- 0Wesley M. Botello-Smith, Abdelaziz Alsamarah, Payal Chatterjee, Chen Xie, Jerome J. Lacroix, Jijun Hao, Yun Luo. Polymodal allosteric regulation of Type 1 Serine/Threonine Kinase Receptors via a conserved electrostatic lock
0 -- 0Xin Chen, Jeffrey M. Beck, John M. Pearson. Neuron's eye view: Inferring features of complex stimuli from neural responses
0 -- 0Honda Naoki. Revisiting chemoaffinity theory: Chemotactic implementation of topographic axonal projection
0 -- 0Jonas Liechti, Gabriel E. Leventhal, Sebastian Bonhoeffer. Host population structure impedes reversion to drug sensitivity after discontinuation of treatment
0 -- 0David Amar, Ron Shamir, Daniel Yekutieli. Extracting replicable associations across multiple studies: Empirical Bayes algorithms for controlling the false discovery rate
0 -- 0Chiara Bruckmann, Endre Sebestyén. Ten simple rules to initiate and run a postdoctoral association
0 -- 0Marinho A. Lopes, Mark P. Richardson, Eugenio Abela, Christian Rummel, Kaspar Schindler, Marc Goodfellow, John R. Terry. An optimal strategy for epilepsy surgery: Disruption of the rich-club?
0 -- 0Maike K. Aurich, Ronan M. T. Fleming, Ines Thiele. A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines
0 -- 0Stefano Palminteri, Germain Lefebvre, Emma J. Kilford, Sarah-Jayne Blakemore. Confirmation bias in human reinforcement learning: Evidence from counterfactual feedback processing
0 -- 0Daniel R. Amor, Raúl Montañez, Salva Duran-Nebreda, Ricard V. Solé. Spatial dynamics of synthetic microbial mutualists and their parasites
0 -- 0Mohamed A. Ghadie, Luke Lambourne, Marc Vidal, Yu Xia. Domain-based prediction of the human isoform interactome provides insights into the functional impact of alternative splicing
0 -- 0Alexander J. Mastin, Frank van den Bosch, Timothy R. Gottwald, Vasthi Alonso Chávez, Stephen Parnell. A method of determining where to target surveillance efforts in heterogeneous epidemiological systems
0 -- 0Mark G. F. Sun, Philip M. Kim. Data driven flexible backbone protein design
0 -- 0Eilon Sharon, Hao Shi, Sandhya Kharbanda, Winston Koh, Lance R. Martin, Kiran K. Khush, Hannah A. Valantine, Jonathan K. Pritchard, Iwijn De Vlaminck. Quantification of transplant-derived circulating cell-free DNA in absence of a donor genotype