Journal: PLoS Computational Biology

Volume 13, Issue 9

0 -- 0Petter Holme, Nelly Litvak. Cost-efficient vaccination protocols for network epidemiology
0 -- 0Vanessa Dumeaux, Bjørn Fjukstad, Hans E. Fjosne, Jan-Ole Frantzen, Marit Muri Holmen, Enno Rodegerdts, Ellen Schlichting, Anne-Lise Børresen-Dale, Lars Ailo Bongo, Eiliv Lund, Michael Hallett. Interactions between the tumor and the blood systemic response of breast cancer patients
0 -- 0Kirill Lykov, Yasaman Nematbakhsh, Menglin Shang, Chwee Teck Lim, Igor V. Pivkin. Probing eukaryotic cell mechanics via mesoscopic simulations
0 -- 0Jean-Louis Dinh, Etienne Farcot, Charlie Hodgman. The logic of the floral transition: Reverse-engineering the switch controlling the identity of lateral organs
0 -- 0Piyush Labhsetwar, Marcelo C. R. Melo, John A. Cole, Zaida Luthey-Schulten. Population FBA predicts metabolic phenotypes in yeast
0 -- 0Burcu Tepekule, Hildegard Uecker, Isabel Derungs, Antoine Frénoy, Sebastian Bonhoeffer. Modeling antibiotic treatment in hospitals: A systematic approach shows benefits of combination therapy over cycling, mixing, and mono-drug therapies
0 -- 0Harang Ju, Costa M. Colbert, William B. Levy. Limited synapse overproduction can speed development but sometimes with long-term energy and discrimination penalties
0 -- 0Kevin D. Murray, Christfried Webers, Cheng Soon Ong, Justin Borevitz, Norman Warthmann. kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
0 -- 0Julie J. Lee, Mehdi Keramati. Flexibility to contingency changes distinguishes habitual and goal-directed strategies in humans
0 -- 0Kristyn S. Masters, Pamela K. Kreeger. Ten simple rules for developing a mentor-mentee expectations document
0 -- 0Kyle P. Blum, Boris Lamotte d'Incamps, Daniel Zytnicki, Lena H. Ting. Force encoding in muscle spindles during stretch of passive muscle
0 -- 0André Voigt, Katja Nowick, Eivind Almaas. A composite network of conserved and tissue specific gene interactions reveals possible genetic interactions in glioma
0 -- 0Michiel van Boven, Jan van de Kassteele, Marjolein J. Korndewal, Christiaan H. van Dorp, Mirjam Kretzschmar, Fiona van der Klis, Hester E. de Melker, Ann C. Vossen, Debbie van Baarle. Infectious reactivation of cytomegalovirus explaining age- and sex-specific patterns of seroprevalence
0 -- 0Shyam Kumar Sudhakar, Sungho Hong, Ivan Raikov, Rodrigo Publio, Claus Lang, Thomas Close, Daqing Guo, Mario Negrello, Erik De Schutter. Spatiotemporal network coding of physiological mossy fiber inputs by the cerebellar granular layer
0 -- 0Jianfei Hu, Eli Boritz, William Wylie, Daniel C. Douek. Stochastic principles governing alternative splicing of RNA
0 -- 0Minseung Kim, Ameen Eetemadi, Ilias Tagkopoulos. DeepPep: Deep proteome inference from peptide profiles
0 -- 0Rafael Hernández-de-Diego, Etienne P. de Villiers, Tomas Klingström, Hadrien Gourlé, Ana Conesa, Erik Bongcam-Rudloff. The eBioKit, a stand-alone educational platform for bioinformatics
0 -- 0Yuewu Liu, Xiufen Zou. Mathematical modeling and quantitative analysis of HIV-1 Gag trafficking and polymerization
0 -- 0Pavel Sanda, Steven Skorheim, Maxim Bazhenov. Multi-layer network utilizing rewarded spike time dependent plasticity to learn a foraging task
0 -- 0Willem de Haan, Elisabeth C. W. van Straaten, Alida A. Gouw, Cornelis J. Stam. Altering neuronal excitability to preserve network connectivity in a computational model of Alzheimer's disease
0 -- 0Kaido Lepik, Tarmo Annilo, Viktorija Kukuskina, eQTLGen Consortium, Kai Kisand, Zoltán Kutalik, Pärt Peterson, Hedi Peterson. C-reactive protein upregulates the whole blood expression of CD59 - an integrative analysis
0 -- 0Ernesto Ruelas Inzunza, Gabriela I. Salazar-Rivera, Magdiel Láinez, María Guadalupe Ruiz-Gómez, Carlo A. Domínguez-Eusebio, Griselda Cristóbal-Sánchez, Issaac A. Teodosio Faustino, Edel Pérez-López, Meagan L. Campbell, Marcus Vinicius Merfa, Ivonne Tatiana Latorre Beltrán, Fernanda Armas, Claudio Mota-Vargas. Ten simple rules for successfully completing a graduate degree in Latin America
0 -- 0Siri Camee van Keulen, Ursula Rothlisberger. Exploring the inhibition mechanism of adenylyl cyclase type 5 by n-terminal myristoylated Gαi1
0 -- 0Marianne Bauer, Isabella R. Graf, Vudtiwat Ngampruetikorn, Greg J. Stephens, Erwin Frey. Exploiting ecology in drug pulse sequences in favour of population reduction
0 -- 0María E. Soler-Oliva, José A. Guerrero-Martínez, Valentina Bachetti, José C. Reyes. Analysis of the relationship between coexpression domains and chromatin 3D organization
0 -- 0Ruth Nussinov, Jason A. Papin. How can computation advance microbiome research?
0 -- 0Chiara Damiani, Riccardo Colombo, Daniela Gaglio, Fabrizia Mastroianni, Dario Pescini, Hans V. Westerhoff, Giancarlo Mauri, Marco Vanoni, Lilia Alberghina. A metabolic core model elucidates how enhanced utilization of glucose and glutamine, with enhanced glutamine-dependent lactate production, promotes cancer cell growth: The WarburQ effect
0 -- 0Alexey A. Gritsenko, Shira Weingarten-Gabbay, Shani Elias-Kirma, Ronit Nir, Dick de Ridder, Eran Segal. Sequence features of viral and human Internal Ribosome Entry Sites predictive of their activity
0 -- 0Paul Villoutreix, Joakim Andén, Bomyi Lim, Hang Lu, Ioannis G. Kevrekidis, Amit Singer, Stanislav Y. Shvartsman. Synthesizing developmental trajectories
0 -- 0Mark D. McDonnell, Bruce P. Graham. Phase changes in neuronal postsynaptic spiking due to short term plasticity
0 -- 0Mudassar Iqbal, Neil Doherty, Anna M. L. Page, Saara N. A. Qazi, Ishan Ajmera, Peter A. Lund, Theodore Kypraios, David J. Scott, Philip J. Hill, Dov J. Stekel. Reconstructing promoter activity from Lux bioluminescent reporters
0 -- 0Kiesha Prem, Alex R. Cook, Mark Jit. Projecting social contact matrices in 152 countries using contact surveys and demographic data
0 -- 0Volker Hofmann, Maurice J. Chacron. Differential receptive field organizations give rise to nearly identical neural correlations across three parallel sensory maps in weakly electric fish
0 -- 0Yanju Liu, Sheryl M. Gracewski, Jong-Hoon Nam. Two passive mechanical conditions modulate power generation by the outer hair cells
0 -- 0Richard B. Greaves, Sabine Dietmann, Austin Smith, Susan Stepney, Julianne D. Halley. A conceptual and computational framework for modelling and understanding the non-equilibrium gene regulatory networks of mouse embryonic stem cells
0 -- 0Cai Wingfield, Li Su, Xunying Liu, Chao Zhang, Philip C. Woodland, Andrew Thwaites, Elisabeth Fonteneau, William D. Marslen-Wilson. Relating dynamic brain states to dynamic machine states: Human and machine solutions to the speech recognition problem
0 -- 0Stefan M. Kallenberger, Anne L. Unger, Stefan Legewie, Konstantinos Lymperopoulos, Ursula Klingmüller, Roland Eils, Dirk-Peter Herten. Correlated receptor transport processes buffer single-cell heterogeneity
0 -- 0Abed Ghanbari, Aleksey Malyshev, Maxim Volgushev, Ian H. Stevenson. Estimating short-term synaptic plasticity from pre- and postsynaptic spiking
0 -- 0Pietro Balbi, Paolo Massobrio, Jeanette Hellgren Kotaleski. A single Markov-type kinetic model accounting for the macroscopic currents of all human voltage-gated sodium channel isoforms
0 -- 0Sirin Yonucu, Defne Yiotalmaz, Colin Phipps, Mehmet Burcin Unlu, Mohammad Kohandel. Quantifying the effects of antiangiogenic and chemotherapy drug combinations on drug delivery and treatment efficacy
0 -- 0Brett Mensh, Konrad P. Körding. Ten simple rules for structuring papers
0 -- 0Evan M. Russek, Ida Momennejad, Matthew Botvinick, Samuel J. Gershman, Nathaniel D. Daw. Predictive representations can link model-based reinforcement learning to model-free mechanisms
0 -- 0Shintaroh Kubo, Wenfei Li, Shoji Takada. Allosteric conformational change cascade in cytoplasmic dynein revealed by structure-based molecular simulations
0 -- 0Xiaosheng Luo, Liufang Xu, Bo Han, Jin Wang. Funneled potential and flux landscapes dictate the stabilities of both the states and the flow: Fission yeast cell cycle
0 -- 0Jaideep Joshi, Iain D. Couzin, Simon A. Levin, Vishwesha Guttal. Mobility can promote the evolution of cooperation via emergent self-assortment dynamics
0 -- 0Jan Humplik, Gasper Tkacik. Probabilistic models for neural populations that naturally capture global coupling and criticality