Journal: PLoS Computational Biology

Volume 14, Issue 2

0 -- 0David Westergaard, Hans Henrik Stærfeldt, Christian Tønsberg, Lars Juhl Jensen, Søren Brunak. A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts
0 -- 0Cesar A. López, Clifford J. Unkefer, Basil I. Swanson, Jessica M. J. Swanson, S. Gnanakaran. Membrane perturbing properties of toxin mycolactone from Mycobacterium ulcerans
0 -- 0Vincent Mirabet, Pawel Krupinski, Olivier Hamant, Elliot M. Meyerowitz, Henrik Jönsson, Arezki Boudaoud. The self-organization of plant microtubules inside the cell volume yields their cortical localization, stable alignment, and sensitivity to external cues
0 -- 0Zhaoran Zhang, Dena Guo, Meghan E. Huber, Se-Woong Park, Dagmar Sternad. Exploiting the geometry of the solution space to reduce sensitivity to neuromotor noise
0 -- 0Vasundra Touré, Nicolas Le Novère, Dagmar Waltemath, Olaf Wolkenhauer. Quick tips for creating effective and impactful biological pathways using the Systems Biology Graphical Notation
0 -- 0Stefano Motta, Claudia Minici, Dario Corrada, Laura Bonati, Alessandro Pandini. Ligand-induced perturbation of the HIF-2α: ARNT dimer dynamics
0 -- 0Iulia A. Neagu, Jason Olejarz, Mark Freeman, Daniel I. S. Rosenbloom, Martin A. Nowak, Alison L. Hill. Life cycle synchronization is a viral drug resistance mechanism
0 -- 0Nikolaus Berndt, Marius Stefan Horger, Sascha Bulik, Hermann-Georg Holzhütter. A multiscale modelling approach to assess the impact of metabolic zonation and microperfusion on the hepatic carbohydrate metabolism
0 -- 0Andreas Hula, Iris Vilares, Terry Lohrenz, Peter Dayan, P. Read Montague. A model of risk and mental state shifts during social interaction
0 -- 0Ryan C. Kennedy, Meir Marmor, Ralph Marcucio, C. Anthony Hunt. Simulation enabled search for explanatory mechanisms of the fracture healing process
0 -- 0Fei Qi, Magdalena Motz, Kirsten Jung, Jürgen Lassak, Dmitrij Frishman. Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation
0 -- 0Dorjsuren Battogtokh, Shihoko Kojima, John J. Tyson. Modeling the interactions of sense and antisense Period transcripts in the mammalian circadian clock network
0 -- 0Matias I. Maturana, Nicholas V. Apollo, David J. Garrett, Tatiana Kameneva, Shaun L. Cloherty, David B. Grayden, Anthony N. Burkitt, Michael R. Ibbotson, Hamish Meffin. Electrical receptive fields of retinal ganglion cells: Influence of presynaptic neurons
0 -- 0XiMing Li, William R. Holmes. Biophysical attributes that affect CaMKII activation deduced with a novel spatial stochastic simulation approach
0 -- 0Rahul Gupta. Self-crowding of AMPA receptors in the excitatory postsynaptic density can effectuate anomalous receptor sub-diffusion
0 -- 0Evan L. Ray, Nicholas G. Reich. Prediction of infectious disease epidemics via weighted density ensembles
0 -- 0Miquel Marin-Riera, Jacqueline Moustakas-Verho, Yoland Savriama, Jukka Jernvall, Isaac Salazar-Ciudad. Differential tissue growth and cell adhesion alone drive early tooth morphogenesis: An ex vivo and in silico study
0 -- 0Meike T. Wortel, Elad Noor, Michael Ferris, Frank J. Bruggeman, Wolfram Liebermeister. Metabolic enzyme cost explains variable trade-offs between microbial growth rate and yield
0 -- 0Huijing Du, Yangyang Wang, Daniel Haensel, Briana Lee, Xing Dai, Qing Nie. Multiscale modeling of layer formation in epidermis
0 -- 0Pau Farré, Eldon Emberly. A maximum-entropy model for predicting chromatin contacts
0 -- 0Sneha Vishwanath, Alexandre G. de Brevern, Narayanaswamy Srinivasan. Same but not alike: Structure, flexibility and energetics of domains in multi-domain proteins are influenced by the presence of other domains
0 -- 0Ahmadreza Ghaffarizadeh, Randy Heiland, Samuel H. Friedman, Shannon M. Mumenthaler, Paul Macklin. PhysiCell: An open source physics-based cell simulator for 3-D multicellular systems
0 -- 0Michaël Dougoud, Laura Vinckenbosch, Rudolf P. Rohr, Louis-Félix Bersier, Christian Mazza. The feasibility of equilibria in large ecosystems: A primary but neglected concept in the complexity-stability debate
0 -- 0Volker Pernice, Rava Azeredo da Silveira. Interpretation of correlated neural variability from models of feed-forward and recurrent circuits
0 -- 0Chase Cockrell, Gary An. Examining the controllability of sepsis using genetic algorithms on an agent-based model of systemic inflammation
0 -- 0Adam J. Kucharski. Ten simple rules for writing a popular science book
0 -- 0Romesh G. Abeysuriya, Jonathan Hadida, Stamatios N. Sotiropoulos, Saâd Jbabdi, Robert Becker, Benjamin A. E. Hunt, Matthew J. Brookes, Mark W. Woolrich. A biophysical model of dynamic balancing of excitation and inhibition in fast oscillatory large-scale networks
0 -- 0Fleur Zeldenrust, Pascal J. P. Chameau, Wytse J. Wadman. Spike and burst coding in thalamocortical relay cells
0 -- 0Richard Pang, Floris van Breugel, Michael Dickinson, Jeffrey A. Riffell, Adrienne L. Fairhall. History dependence in insect flight decisions during odor tracking
0 -- 0Alexander M. Sevy, Swetasudha Panda, James E. Crowe Jr., Jens Meiler, Yevgeniy Vorobeychik. Integrating linear optimization with structural modeling to increase HIV neutralization breadth
0 -- 0Meenu R. Mridula, Ashalatha S. Nair, K. Satheesh Kumar. Genetic programming based models in plant tissue culture: An addendum to traditional statistical approach
0 -- 0Aurina Arnatkeviciute, Ben D. Fulcher, Roger Pocock, Alex Fornito. Hub connectivity, neuronal diversity, and gene expression in the Caenorhabditis elegans connectome
0 -- 0Cesar Alvarado, Nicole A. Fider, Helen J. Wearing, Natalia L. Komarova. Optimizing homeostatic cell renewal in hierarchical tissues
0 -- 0James X. Sun, Yuting He, Eric Sanford, Meagan Montesion, Garrett M. Frampton, Stéphane Vignot, Jean-Charles Soria, Jeffrey S. Ross, Vincent A. Miller, Philip J. Stephens, Doron Lipson, Roman Yelensky. A computational approach to distinguish somatic vs. germline origin of genomic alterations from deep sequencing of cancer specimens without a matched normal
0 -- 0Chloe Spalding, Emma Keen, David J. Smith, Anne-Marie Krachler, Sara Jabbari. Mathematical modelling of the antibiotic-induced morphological transition of Pseudomonas aeruginosa
0 -- 0Nicola J. Mulder, Russell Schwartz, Michelle D. Brazas, Cath Brooksbank, Bruno A. Gaëta, Sarah L. Morgan, Mark A. Pauley, Anne G. Rosenwald, Gabriella Rustici, Michael L. Sierk, Tandy J. Warnow, Lonnie R. Welch. The development and application of bioinformatics core competencies to improve bioinformatics training and education
0 -- 0Caitlin Collins, Xavier Didelot. A phylogenetic method to perform genome-wide association studies in microbes that accounts for population structure and recombination
0 -- 0Margriet M. Palm, Marjet Elemans, Joost B. Beltman. Heritable tumor cell division rate heterogeneity induces clonal dominance
0 -- 0Robin N. Thompson, Christopher A. Gilligan, Nik J. Cunniffe. Control fast or control smart: When should invading pathogens be controlled?
0 -- 0Michael A. Moxley, Kalyan C. Vinnakota, Jason N. Bazil, Nathan R. Qi, Daniel A. Beard. Systems-level computational modeling demonstrates fuel selection switching in high capacity running and low capacity running rats
0 -- 0Bandan Chakrabortty, Ikram Blilou, Ben Scheres, Bela M. Mulder. A computational framework for cortical microtubule dynamics in realistically shaped plant cells
0 -- 0Edgar Herrera-Delgado, Ruben Perez-Carrasco, James Briscoe, Peter Sollich. Memory functions reveal structural properties of gene regulatory networks
0 -- 0Yen-Ting Lin, Peter G. Hufton, Esther J. Lee, Davit A. Potoyan. A stochastic and dynamical view of pluripotency in mouse embryonic stem cells
0 -- 0Peter W. Donhauser, Esther Florin, Sylvain Baillet. Imaging of neural oscillations with embedded inferential and group prevalence statistics
0 -- 0Yishai Shimoni. Association between expression of random gene sets and survival is evident in multiple cancer types and may be explained by sub-classification
0 -- 0Raju Kalaivani, Raju Reema, Narayanaswamy Srinivasan. Recognition of sites of functional specialisation in all known eukaryotic protein kinase families
0 -- 0Vipul Gupta, Narendra M. Dixit. Trade-off between synergy and efficacy in combinations of HIV-1 latency-reversing agents
0 -- 0Eric W. Jones, Jean M. Carlson. In silico analysis of antibiotic-induced Clostridium difficile infection: Remediation techniques and biological adaptations