Journal: PLoS Computational Biology

Volume 14, Issue 7

0 -- 0Darshan Mandge, Rohit Manchanda. A biophysically detailed computational model of urinary bladder small DRG neuron soma
0 -- 0Xiuli Chen, Robb B. Rutledge, Harriet R. Brown, Raymond J. Dolan, Sven Bestmann, Joseph M. Galea. Age-dependent Pavlovian biases influence motor decision-making
0 -- 0Onno van der Groen, Matthew F. Tang, Nicole Wenderoth, Jason B. Mattingley. Stochastic resonance enhances the rate of evidence accumulation during combined brain stimulation and perceptual decision-making
0 -- 0Ximo Pechuan, Raymond Puzio, Aviv Bergman. The evolutionary dynamics of metabolic protocells
0 -- 0Xiaojie Chen, Attila Szolnoki. Punishment and inspection for governing the commons in a feedback-evolving game
0 -- 0Chia-Chin Wu, Hannah C. Beird, Jianhua Zhang 0006, P. Andrew Futreal. FusionPathway: Prediction of pathways and therapeutic targets associated with gene fusions in cancer
0 -- 0William J. M. Probert, Chris P. Jewell, Marleen Werkman, Christopher Fonnesbeck, Yoshitaka Goto, Michael C. Runge, Satoshi Sekiguchi, Katriona Shea, Matt J. Keeling, Matthew J. Ferrari, Michael J. Tildesley. Real-time decision-making during emergency disease outbreaks
0 -- 0Yina Wei, Giri P. Krishnan, Maxim Komarov, Maxim Bazhenov. Differential roles of sleep spindles and sleep slow oscillations in memory consolidation
0 -- 0Tanmay A. Gokhale, Huda Asfour, Shravan Verma, Nenad Bursac, Craig S. Henriquez. Microheterogeneity-induced conduction slowing and wavefront collisions govern macroscopic conduction behavior: A computational and experimental study
0 -- 0Sebastian D. Boie, Erin G. Connor, Margaret McHugh, Katherine I. Nagel, G. Bard Ermentrout, John P. Crimaldi, Jonathan D. Victor. Information-theoretic analysis of realistic odor plumes: What cues are useful for determining location?
0 -- 0Farzaneh Mohajerani, Michael F. Hagan. The role of the encapsulated cargo in microcompartment assembly
0 -- 0Albert Pla, Xiangfu Zhong, Simon Rayner. miRAW: A deep learning-based approach to predict microRNA targets by analyzing whole microRNA transcripts
0 -- 0Felix Brinkmann, Moritz Mercker, Thomas Richter 0003, Anna Marciniak-Czochra. Post-Turing tissue pattern formation: Advent of mechanochemistry
0 -- 0Hesam Setareh, Moritz Deger, Wulfram Gerstner. Excitable neuronal assemblies with adaptation as a building block of brain circuits for velocity-controlled signal propagation
0 -- 0Betül Senay Aras, Y. C. Zhou, Adriana Dawes, Ching-Shan Chou. The importance of mechanical constraints for proper polarization and psuedo-cleavage furrow generation in the early Caenorhabditis elegans embryo
0 -- 0Magdalena San Román, Andreas Wagner. An enormous potential for niche construction through bacterial cross-feeding in a homogeneous environment
0 -- 0Vishnu Venugopal, Pranesh Padmanabhan, Rubesh Raja, Narendra M. Dixit. Modelling how responsiveness to interferon improves interferon-free treatment of hepatitis C virus infection
0 -- 0Dominik Freche, Jodie Naim-Feil, Avi Peled, Nava Levit-Binnun, Elisha Moses. A quantitative physical model of the TMS-induced discharge artifacts in EEG
0 -- 0Fredrik Allenmark, Hermann J. Müller, Zhuanghua Shi. Inter-trial effects in visual pop-out search: Factorial comparison of Bayesian updating models
0 -- 0Naihui Zhou, Zachary D. Siegel, Scott Zarecor, Nigel Lee, Darwin A. Campbell, Carson M. Andorf, Dan Nettleton, Carolyn J. Lawrence-Dill, Baskar Ganapathysubramanian, Jonathan W. Kelly, Iddo Friedberg. Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning
0 -- 0Joshua H. Goldwyn, Bradley R. Slabe, Joseph B. Travers, David H. Terman. Gain control with A-type potassium current: IA as a switch between divisive and subtractive inhibition
0 -- 0Duc Do, Serdar Bozdag. Cancerin: A computational pipeline to infer cancer-associated ceRNA interaction networks
0 -- 0Ankit N. Khambhati, John D. Medaglia, Elisabeth A. Karuza, Sharon L. Thompson-Schill, Danielle S. Bassett. Subgraphs of functional brain networks identify dynamical constraints of cognitive control
0 -- 0Kaixi Tang, Colton G. Boudreau, Claire M. Brown, Anmar Khadra. Paxillin phosphorylation at serine 273 and its effects on Rac, Rho and adhesion dynamics
0 -- 0Spase Petkoski, J. Matias Palva, Viktor K. Jirsa. Phase-lags in large scale brain synchronization: Methodological considerations and in-silico analysis
0 -- 0Bernardo A. Mello, Wenlin Pan, Gerald L. Hazelbauer, Yuhai Tu. A dual regulation mechanism of histidine kinase CheA identified by combining network-dynamics modeling and system-level input-output data
0 -- 0Haitao Chai, Hongmei Jiang, Lu Lin, Lei Liu 0004. A marginalized two-part Beta regression model for microbiome compositional data
0 -- 0William G. P. Mayner, William Marshall, Larissa Albantakis, Graham Findlay, Robert Marchman, Giulio Tononi. PyPhi: A toolbox for integrated information theory
0 -- 0Lukas Großberger, Francesco Paolo Battaglia, Martin Vinck. Unsupervised clustering of temporal patterns in high-dimensional neuronal ensembles using a novel dissimilarity measure
0 -- 0Michelle R. Greene, Bruce C. Hansen. Shared spatiotemporal category representations in biological and artificial deep neural networks
0 -- 0Ida Friis, Ilia A. Solov'yov. Activation of the DNA-repair mechanism through NBS1 and MRE11 diffusion
0 -- 0Bita Khalili, Laura Merlini, Vincent Vincenzetti, Sophie G. Martin, Dimitrios Vavylonis. Exploration and stabilization of Ras1 mating zone: A mechanism with positive and negative feedbacks
0 -- 0Ajay Seth, Jennifer L. Hicks, Thomas K. Uchida, Ayman Habib, Christopher L. Dembia, James J. Dunne, Carmichael F. Ong, Matthew S. DeMers, Apoorva Rajagopal, Matthew Millard, Samuel R. Hamner, Edith M. Arnold, Jennifer R. Yong, Shrinidhi K. Lakshmikanth, Michael A. Sherman, Joy P. Ku, Scott L. Delp. OpenSim: Simulating musculoskeletal dynamics and neuromuscular control to study human and animal movement
0 -- 0Antoine de Weck, Javad Golji, Michael D. Jones, Joshua M. Korn, Eric Billy, E. Robert McDonald III, Tobias Schmelzle, Hans Bitter, Audrey Kauffmann. Correction of copy number induced false positives in CRISPR screens
0 -- 0Luigi Acerbi, Kalpana Dokka, Dora E. Angelaki, Wei Ji Ma. Bayesian comparison of explicit and implicit causal inference strategies in multisensory heading perception
0 -- 0Sonja E. M. Boas, Joao Carvalho, Marloes van den Broek, Ester M. Weijers, Marie-José Goumans, Pieter Koolwijk, Roeland M. H. Merks. A local uPAR-plasmin-TGFβ1 positive feedback loop in a qualitative computational model of angiogenic sprouting explains the in vitro effect of fibrinogen variants
0 -- 0Antreas C. Kalli, Reinhart A. F. Reithmeier. Interaction of the human erythrocyte Band 3 anion exchanger 1 (AE1, SLC4A1) with lipids and glycophorin A: Molecular organization of the Wright (Wr) blood group antigen
0 -- 0Colton J. Lloyd, Ali Ebrahim, Laurence Yang, Zachary A. King, Edward Catoiu, Edward J. O'Brien, Joanne K. Liu, Bernhard O. Palsson. COBRAme: A computational framework for genome-scale models of metabolism and gene expression
0 -- 0Malbor Asllani, Paul Expert, Timoteo Carletti. A minimally invasive neurostimulation method for controlling abnormal synchronisation in the neuronal activity
0 -- 0Edvin Fuglebakk, Nathalie Reuter. A model for hydrophobic protrusions on peripheral membrane proteins