Journal: PLoS Computational Biology

Volume 14, Issue 8

0 -- 0Lorenzo Posani, Simona Cocco, Rémi Monasson. Integration and multiplexing of positional and contextual information by the hippocampal network
0 -- 0Alena van Bömmel, Michael I. Love, Ho-Ryun Chung, Martin Vingron. coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers
0 -- 0Tianwei Yu. A new dynamic correlation algorithm reveals novel functional aspects in single cell and bulk RNA-seq data
0 -- 0Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard. Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
0 -- 0Arnab Bandyopadhyay, Huijing Wang, J. Christian J. Ray. Lineage space and the propensity of bacterial cells to undergo growth transitions
0 -- 0Rong Zhang, Zhao Ren, Wei Chen. SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks
0 -- 0James T. Yurkovich, Miguel A. Alcantar, Zachary B. Haiman, Bernhard O. Palsson. Network-level allosteric effects are elucidated by detailing how ligand-binding events modulate utilization of catalytic potentials
0 -- 0Massimo Silvetti, Eliana Vassena, Elger L. Abrahamse, Tom Verguts. Dorsal anterior cingulate-brainstem ensemble as a reinforcement meta-learner
0 -- 0. Correction: Limits on reliable information flows through stochastic populations
0 -- 0Paula Sanz-Leon, Peter A. Robinson, Stuart A. Knock, Peter M. Drysdale, Romesh G. Abeysuriya, Felix K. Fung, Christopher J. Rennie, Xuelong Zhao. NFTsim: Theory and Simulation of Multiscale Neural Field Dynamics
0 -- 0Niru Maheswaranathan, David B. Kastner, Stephen A. Baccus, Surya Ganguli. Inferring hidden structure in multilayered neural circuits
0 -- 0Luyi Tian, Shian Su, Xueyi Dong, Daniela Amann-Zalcenstein, Christine Biben, Azadeh Seidi, Douglas J. Hilton, Shalin H. Naik, Matthew E. Ritchie. scPipe: A flexible R/Bioconductor preprocessing pipeline for single-cell RNA-sequencing data
0 -- 0Richard Rosch, Paul R. Hunter, Torsten Baldeweg, Karl J. Friston, Martin P. Meyer. Calcium imaging and dynamic causal modelling reveal brain-wide changes in effective connectivity and synaptic dynamics during epileptic seizures
0 -- 0Christos Vlachos, Robert Kofler. MimicrEE2: Genome-wide forward simulations of Evolve and Resequencing studies
0 -- 0Bernard Cazelles, Clara Champagne, Joseph Dureau. Accounting for non-stationarity in epidemiology by embedding time-varying parameters in stochastic models
0 -- 0Shishir Adhikari, Jacob Moran, Christopher Weddle, Michael Hinczewski. Unraveling the mechanism of the cadherin-catenin-actin catch bond
0 -- 0Kirsten Henderson, Michel Loreau. How ecological feedbacks between human population and land cover influence sustainability
0 -- 0Robert Cope, Joshua V. Ross, Monique Chilver, Nigel P. Stocks, Lewis Mitchell. Characterising seasonal influenza epidemiology using primary care surveillance data
0 -- 0Silke Bergeler, Erwin Frey. Regulation of Pom cluster dynamics in Myxococcus xanthus
0 -- 0Valentina Marziano, Piero Poletti, Guillaume Béraud, Pierre-Yves Boëlle, Stefano Merler, Vittoria Colizza. Modeling the impact of changes in day-care contact patterns on the dynamics of varicella transmission in France between 1991 and 2015
0 -- 0Diego Garrido-Martín, Emilio Palumbo, Roderic Guigó, Alessandra Breschi. ggsashimi: Sashimi plot revised for browser- and annotation-independent splicing visualization
0 -- 0Margaret J. Tse, Brian K. Chu, Cameron P. Gallivan, Elizabeth L. Read. Rare-event sampling of epigenetic landscapes and phenotype transitions
0 -- 0Gaëtan Vignoud, Laurent Venance, Jonathan D. Touboul. Interplay of multiple pathways and activity-dependent rules in STDP
0 -- 0Luisa M. R. Napolitano, Arin Marchesi, Alex Rodriguez, Matteo De March, Silvia Onesti, Alessandro Laio, Vincent Torre. The permeation mechanism of organic cations through a CNG mimic channel
0 -- 0Fabio Lauria, Toma Tebaldi, Paola Bernabò, Ewout J. N. Groen, Thomas H. Gillingwater, Gabriella Viero. riboWaltz: Optimization of ribosome P-site positioning in ribosome profiling data
0 -- 0Vito Paolo Pastore, Paolo Massobrio, Aleksandar Godjoski, Sergio Martinoia. Identification of excitatory-inhibitory links and network topology in large-scale neuronal assemblies from multi-electrode recordings
0 -- 0Teresa Katthagen, Christoph Mathys, Lorenz Deserno, Henrik Walter, Norbert Kathmann, Andreas Heinz, Florian Schlagenhauf. Modeling subjective relevance in schizophrenia and its relation to aberrant salience
0 -- 0Ilya Patrushev, Christina James-Zorn, Aldo Ciau-Uitz, Roger Patient, Michael J. Gilchrist. New methods for computational decomposition of whole-mount in situ images enable effective curation of a large, highly redundant collection of Xenopus images
0 -- 0Jaime Agudo-Canalejo, Reinhard Lipowsky. Domes and cones: Adhesion-induced fission of membranes by ESCRT proteins
0 -- 0Nathan Insel, Jordan Guerguiev, Blake A. Richards. Irrelevance by inhibition: Learning, computation, and implications for schizophrenia
0 -- 0Andrew G. McDonald, Keith F. Tipton, Gavin P. Davey. A mechanism for bistability in glycosylation
0 -- 0Xiao Ma, Onur Dagliyan, Klaus M. Hahn, Gaudenz Danuser. Profiling cellular morphodynamics by spatiotemporal spectrum decomposition
0 -- 0Mohanalakshmi Narasumani, Paul M. Harrison. Discerning evolutionary trends in post-translational modification and the effect of intrinsic disorder: Analysis of methylation, acetylation and ubiquitination sites in human proteins
0 -- 0Ankit N. Khambhati, John D. Medaglia, Elisabeth A. Karuza, Sharon L. Thompson-Schill, Danielle S. Bassett. Correction: Subgraphs of functional brain networks identify dynamical constraints of cognitive control
0 -- 0Christina L. Hamlet, Kathleen A. Hoffman, Eric D. Tytell, Lisa J. Fauci. The role of curvature feedback in the energetics and dynamics of lamprey swimming: A closed-loop model
0 -- 0Xing Chen, Jun Yin, Jia Qu, Li Huang. MDHGI: Matrix Decomposition and Heterogeneous Graph Inference for miRNA-disease association prediction
0 -- 0Jason S. Sherfey, Salva Ardid, Joachim Hass, Michael E. Hasselmo, Nancy J. Kopell. Flexible resonance in prefrontal networks with strong feedback inhibition
0 -- 0Gert Peters, Jo Maertens, Jeroen Lammertyn, Marjan De Mey. Exploring of the feature space of de novo developed post-transcriptional riboregulators
0 -- 0Cesar A. O. Coelho, Tatiana L. Ferreira, Juliana C. Kramer-Soares, João R. Sato, Maria Gabriela M. Oliveira. Network supporting contextual fear learning after dorsal hippocampal damage has increased dependence on retrosplenial cortex
0 -- 0Stefano Zappacosta, Francesco Mannella, Marco Mirolli, Gianluca Baldassarre. General differential Hebbian learning: Capturing temporal relations between events in neural networks and the brain
0 -- 0Kyubum Lee, Maria Livia Famiglietti, Aoife McMahon, Chih-Hsuan Wei, Jacqueline A. L. MacArthur, Sylvain Poux, Lionel Breuza, Alan Bridge, Fiona Cunningham, Ioannis Xenarios, Zhiyong Lu. Scaling up data curation using deep learning: An application to literature triage in genomic variation resources