Journal: PLoS Computational Biology

Volume 9, Issue 5

0 -- 0Ginestra Bianconi, Kun Zhao, Irene A. Chen, Martin A. Nowak. Selection for Replicases in Protocells
0 -- 0Jonathan L. Robinson, Mark P. Brynildsen. Escherichia coli
0 -- 0David W. Eyre, Madeleine L. Cule, David Griffiths, Derrick W. Crook, Tim E. A. Peto, A. Sarah Walker, Daniel J. Wilson. Clostridium difficile Transmission
0 -- 0Peng Jiang, Mona Singh, Hilary A. Coller. Computational Assessment of the Cooperativity between RNA Binding Proteins and MicroRNAs in Transcript Decay
0 -- 0Michiel van Boven, Wilhelmina L. M. Ruijs, Jacco Wallinga, Philip D. O'Neill, Susan Hahné. Estimation of Vaccine Efficacy and Critical Vaccination Coverage in Partially Observed Outbreaks
0 -- 0Xiaodong Cai, Juan-Andrés Bazerque, Georgios B. Giannakis. Inference of Gene Regulatory Networks with Sparse Structural Equation Models Exploiting Genetic Perturbations
0 -- 0Jeffrey E. Markowitz, Elizabeth Ivie, Laura Kligler, Timothy J. Gardner. Long-range Order in Canary Song
0 -- 0Richard A. White, Jørgen V. Bjørnholt, Donna D. Baird, Tore Midtvedt, Jennifer R. Harris, Marcello Pagano, Winston Hide, Knut Rudi, Birgitte Moen, Nina Iszatt, Shyamal D. Peddada, Merete Eggesbø. Novel Developmental Analyses Identify Longitudinal Patterns of Early Gut Microbiota that Affect Infant Growth
0 -- 0Hang Zhang, Nathaniel D. Daw, Laurence T. Maloney. Testing Whether Humans Have an Accurate Model of Their Own Motor Uncertainty in a Speeded Reaching Task
0 -- 0Alessio Franci, Guillaume Drion, Vincent Seutin, Rodolphe Sepulchre. A Balance Equation Determines a Switch in Neuronal Excitability
0 -- 0Janusz M. Bujnicki, Jerzy Tiuryn. Bioinformatics and Computational Biology in Poland
0 -- 0Yunlang Li, Tamar Schlick. "Gate-keeper" Residues and Active-Site Rearrangements in DNA Polymerase μ Help Discriminate Non-cognate Nucleotides
0 -- 0Jonathan J. Hunt, Peter Dayan, Geoffrey J. Goodhill. Sparse Coding Can Predict Primary Visual Cortex Receptive Field Changes Induced by Abnormal Visual Input
0 -- 0Po-Wei Chen, Luís L. Fonseca, Yusuf A. Hannun, Eberhard O. Voit. Coordination of Rapid Sphingolipid Responses to Heat Stress in Yeast
0 -- 0Alexey Solovyev, Qi Mi, Yi-Ting Tzen, David Brienza, Yoram Vodovotz. Hybrid Equation/Agent-Based Model of Ischemia-Induced Hyperemia and Pressure Ulcer Formation Predicts Greater Propensity to Ulcerate in Subjects with Spinal Cord Injury
0 -- 0Wei Huang, Joohyun Kim, Shantenu Jha, Fareed Aboul-Ela. The Impact of a Ligand Binding on Strand Migration in the SAM-I Riboswitch
0 -- 0Fanny Gascuel, Marc Choisy, Jean-Marc Duplantier, Florence Débarre, Carine Brouat. Host Resistance, Population Structure and the Long-Term Persistence of Bubonic Plague: Contributions of a Modelling Approach in the Malagasy Focus
0 -- 0Ayako Watanabe, Daisuke Hoshino, Naohiko Koshikawa, Motoharu Seiki, Takashi Suzuki, Kazuhisa Ichikawa. Critical Role of Transient Activity of MT1-MMP for ECM Degradation in Invadopodia
0 -- 0Kendrick N. Kay, Jonathan Winawer, Ariel Rokem, Aviv Mezer, Brian A. Wandell. A Two-Stage Cascade Model of BOLD Responses in Human Visual Cortex
0 -- 0Anurag Sethi, Jianhui Tian, Cynthia A. Derdeyn, Bette T. Korber, S. Gnanakaran. A Mechanistic Understanding of Allosteric Immune Escape Pathways in the HIV-1 Envelope Glycoprotein
0 -- 0Szymon Stoma, Alexandre Donzé, François Bertaux, Oded Maler, Grégory Batt. STL-based Analysis of TRAIL-induced Apoptosis Challenges the Notion of Type I/Type II Cell Line Classification
0 -- 0Adam S. LaPrad, Kenneth R. Lutchen, Béla Suki. A Mechanical Design Principle for Tissue Structure and Function in the Airway Tree
0 -- 0James G. Dyke, Iain S. Weaver. The Emergence of Environmental Homeostasis in Complex Ecosystems
0 -- 0Christoph A. Haselwandter, Rob Phillips. Connection between Oligomeric State and Gating Characteristics of Mechanosensitive Ion Channels
0 -- 0Erhan Bilal, Janusz Dutkowski, Justin Guinney, In Sock Jang, Benjamin A. Logsdon, Gaurav Pandey, Benjamin A. Sauerwine, Yishai Shimoni, Hans Kristian Moen Vollan, Brigham H. Mecham, Oscar M. Rueda, Jorg Tost, Christina Curtis, Mariano J. Alvarez, Vessela N. Kristensen, Samuel Aparicio, Anne-Lise Børresen-Dale, Carlos Caldas, Andrea Califano, Stephen H. Friend, Trey Ideker, Eric E. Schadt, Gustavo A. Stolovitzky, Adam A. Margolin. Improving Breast Cancer Survival Analysis through Competition-Based Multidimensional Modeling
0 -- 0Mark D. M. Leiserson, Dima Blokh, Roded Sharan, Benjamin J. Raphael. Simultaneous Identification of Multiple Driver Pathways in Cancer
0 -- 0Lawrence E. Hunter. Rocky Mountain Conference on Bioinformatics Celebrates 10 Years
0 -- 0Seth Blumberg, James O. Lloyd-Smith. 0 and Transmission Heterogeneity from the Size Distribution of Stuttering Chains
0 -- 0Wei-Hua Chen, Xing-Ming Zhao, Vera van Noort, Peer Bork. Human Monogenic Disease Genes Have Frequently Functionally Redundant Paralogs
0 -- 0Can Guven, Erin Rericha, Edward Ott, Wolfgang Losert. Modeling and Measuring Signal Relay in Noisy Directed Migration of Cell Groups
0 -- 0HaiPeng Li, Thomas Wiehe. Coalescent Tree Imbalance and a Simple Test for Selective Sweeps Based on Microsatellite Variation
0 -- 0Alexandra M. Schnoes, David C. Ream, Alexander W. Thorman, Patricia C. Babbitt, Iddo Friedberg. Biases in the Experimental Annotations of Protein Function and Their Effect on Our Understanding of Protein Function Space
0 -- 0Pete Riley, Michal Ben-Nun, Richard Armenta, Jon A. Linker, Angela A. Eick, Jose L. Sanchez, Dylan George, David P. Bacon, Steven Riley. Multiple Estimates of Transmissibility for the 2009 Influenza Pandemic Based on Influenza-like-Illness Data from Small US Military Populations
0 -- 0Vincent Vagenende, Alvin X. Han, Han B. Pek, Bernard L. W. Loo. Quantifying the Molecular Origins of Opposite Solvent Effects on Protein-Protein Interactions
0 -- 0Tobias Linder, Bert L. de Groot, Anna Stary-Weinzinger. Probing the Energy Landscape of Activation Gating of the Bacterial Potassium Channel KcsA
0 -- 0Rafael A. Barrio, José Roberto Romero-Arias, Marco A. Noguez, Eugenio Azpeitia, Elizabeth Ortiz-Gutiérrez, Valeria Hernández-Hernández, Yuriria Cortes-Poza, Elena R. Alvarez-Buylla. Arabidopsis thaliana Root as a Study System
0 -- 0Gouri Shankar Pandey, Chen Yanover, Tom E. Howard, Zuben E. Sauna. F8 Gene and MHC-II Variants as Risk Factors for the Development of Inhibitory Anti-Factor VIII Antibodies during the Treatment of Hemophilia A: A Computational Assessment
0 -- 0Julian Garrec, Ivano Tavernelli, Ursula Rothlisberger. Two Misfolding Routes for the Prion Protein around pH 4.5
0 -- 0Yunpeng Wang, Jon Olav Vik, Stig W. Omholt, Arne B. Gjuvsland. Effect of Regulatory Architecture on Broad versus Narrow Sense Heritability
0 -- 0Margaret E. Johnson, Gerhard Hummer. Interface-Resolved Network of Protein-Protein Interactions