Journal: PLoS Computational Biology

Volume 9, Issue 6

0 -- 0Drew H. Bryant, Mark Moll, Paul W. Finn, Lydia E. Kavraki. Combinatorial Clustering of Residue Position Subsets Predicts Inhibitor Affinity across the Human Kinome
0 -- 0Melanie I. Stefan, Nicolas Le Novère. Cooperative Binding
0 -- 0Rui Zhao, Franziska Michor. Patterns of Proliferative Activity in the Colonic Crypt Determine Crypt Stability and Rates of Somatic Evolution
0 -- 0Amneet Pal Singh Bhalla, Boyce E. Griffith, Neelesh A. Patankar. A Forced Damped Oscillation Framework for Undulatory Swimming Provides New Insights into How Propulsion Arises in Active and Passive Swimming
0 -- 0Diane M. Longo, Jangir Selimkhanov, Jeffrey D. Kearns, Jeff Hasty, Alexander Hoffmann, Lev S. Tsimring. κB Signaling Module
0 -- 0Hannah C. Slater, Manoj Gambhir, Paul E. Parham, Edwin Michael. Modelling Co-Infection with Malaria and Lymphatic Filariasis
0 -- 0Gabriel E. Hoffman, Benjamin A. Logsdon, Jason G. Mezey. PUMA: A Unified Framework for Penalized Multiple Regression Analysis of GWAS Data
0 -- 0Louisa Wood, Philipp Gebhardt. Bioinformatics Goes to School - New Avenues for Teaching Contemporary Biology
0 -- 0Louis-François Handfield, Yolanda T. Chong, Jibril Simmons, Brenda J. Andrews, Alan M. Moses. Unsupervised Clustering of Subcellular Protein Expression Patterns in High-Throughput Microscopy Images Reveals Protein Complexes and Functional Relationships between Proteins
0 -- 0Balázs Könnyü, S. Kashif Sadiq, Tamás Turányi, Rita Hírmondó, Barbara Müller, Hans-Georg Kräusslich, Peter V. Coveney, Viktor Müller. Gag-Pol Processing during HIV-1 Virion Maturation: A Systems Biology Approach
0 -- 0Joshua L. Payne, Andreas Wagner. Constraint and Contingency in Multifunctional Gene Regulatory Circuits
0 -- 0William R. Harcombe, Nigel F. Delaney, Nicholas Leiby, Niels Klitgord, Christopher J. Marx. The Ability of Flux Balance Analysis to Predict Evolution of Central Metabolism Scales with the Initial Distance to the Optimum
0 -- 0Oleg V. Kim, Zhiliang Xu, Elliot D. Rosen, Mark S. Alber. Fibrin Networks Regulate Protein Transport during Thrombus Development
0 -- 0Annalisa Nuccitelli, C. Daniela Rinaudo, Barbara Brogioni, Roberta Cozzi, Mario Ferrer-Navarro, Daniel Yero, John L. Telford, Guido Grandi, Xavier Daura, Martin Zacharias, Domenico Maione. Streptococcus
0 -- 0Nicholas Ketz, Srinimisha G. Morkonda, Randall C. O'Reilly. Theta Coordinated Error-Driven Learning in the Hippocampus
0 -- 0Christian P. Koch, Anna Maria Perna, Max Pillong, Nickolay K. Todoroff, Paul Wrede, Gerd Folkers, Jan A. Hiss, Gisbert Schneider. Scrutinizing MHC-I Binding Peptides and Their Limits of Variation
0 -- 0Koichi Fujimoto, Satoshi Sawai. A Design Principle of Group-level Decision Making in Cell Populations
0 -- 0Jörg Bornschein, Marc Henniges, Jörg Lücke. Are V1 Simple Cells Optimized for Visual Occlusions? A Comparative Study
0 -- 0Ritwik K. Niyogi, KongFatt Wong-Lin. Dynamic Excitatory and Inhibitory Gain Modulation Can Produce Flexible, Robust and Optimal Decision-making
0 -- 0Lyudmyla Dorosh, Olesya A. Kharenko, Nandhakishore Rajagopalan, Michele C. Loewen, Maria Stepanova. Molecular Mechanisms in the Activation of Abscisic Acid Receptor PYR1
0 -- 0Yan Zhang, Hye Kyong Kweon, Christian Shively, Anuj Kumar, Philip C. Andrews. Towards Systematic Discovery of Signaling Networks in Budding Yeast Filamentous Growth Stress Response Using Interventional Phosphorylation Data
0 -- 0David R. Riley, Karsten B. Sieber, Kelly M. Robinson, James Robert White, Ashwinkumar Ganesan, Syrus Nourbakhsh, Julie C. Dunning Hotopp. Bacteria-Human Somatic Cell Lateral Gene Transfer Is Enriched in Cancer Samples
0 -- 0Kristian Ovaska, Filomena Matarese, Korbinian Grote, Iryna Charapitsa, Alejandra Cervera, Chengyu Liu, George Reid, Martin Seifert, Hendrik G. Stunnenberg, Sampsa Hautaniemi. ATAD3B to Poor Survival in Breast Cancer
0 -- 0Katy Robinson, Nick Fyson, Ted Cohen, Christophe Fraser, Caroline Colijn. How the Dynamics and Structure of Sexual Contact Networks Shape Pathogen Phylogenies
0 -- 0S. G. Raju, Annika F. Barber, David N. LeBard, Michael L. Klein, Vincenzo Carnevale. Exploring Volatile General Anesthetic Binding to a Closed Membrane-Bound Bacterial Voltage-Gated Sodium Channel via Computation
0 -- 0Christiana N. Fogg, Diane E. Kovats. International Society for Computational Biology Honors David Eisenberg with 2013 Accomplishment by a Senior Scientist Award
0 -- 0Meagan C. Small, Pedro Lopes, Rodrigo B. Andrade, Alexander D. MacKerell Jr. Impact of Ribosomal Modification on the Binding of the Antibiotic Telithromycin Using a Combined Grand Canonical Monte Carlo/Molecular Dynamics Simulation Approach
0 -- 0Nanye Long, Samuel P. Dickson, Jessica M. Maia, Hee Shin Kim, Qianqian Zhu, Andrew S. Allen. Leveraging Prior Information to Detect Causal Variants via Multi-Variant Regression
0 -- 0Richard A. Morton, Jonathan R. Stone, Rama S. Singh. Mate Choice and the Origin of Menopause
0 -- 0Henning Knoop, Marianne Gründel, Yvonne Zilliges, Robert Lehmann, Sabrina Hoffmann, Wolfgang Lockau, Ralf Steuer. Flux Balance Analysis of Cyanobacterial Metabolism: The Metabolic Network of Synechocystis sp. PCC 6803
0 -- 0Antonio G. Zippo, Riccardo Storchi, Sara Nencini, Giancarlo Caramenti, Maurizio Valente, Gabriele Eliseo M. Biella. Neuronal Functional Connection Graphs among Multiple Areas of the Rat Somatosensory System during Spontaneous and Evoked Activities
0 -- 0Elzbieta Petelenz-Kurdziel, Clemens Kühn, Bodil Nordlander, Dagmara Klein, Kuk-Ki Hong, Therese Jacobson, Peter Dahl, Jörg Schaber, Jens Nielsen, Stefan Hohmann, Edda Klipp. Quantitative Analysis of Glycerol Accumulation, Glycolysis and Growth under Hyper Osmotic Stress
0 -- 0Mateus Joffily, Giorgio Coricelli. Emotional Valence and the Free-Energy Principle