Journal: PLoS Computational Biology

Volume 9, Issue 9

0 -- 0James J. Lee, Justin Huang, Christopher G. England, Lacey R. McNally, Hermann B. Frieboes. In Vivo Response to Gemcitabine in Pancreatic Cancer
0 -- 0Hassan Masum, Aarthi Rao, Benjamin M. Good, Matthew H. Todd, Aled M. Edwards, Leslie Chan, Barry A. Bunin, Andrew I. Su, Zakir Thomas, Philip E. Bourne. Ten Simple Rules for Cultivating Open Science and Collaborative R&D
0 -- 0Dipak Barua, William S. Hlavacek. Modeling the Effect of APC Truncation on Destruction Complex Function in Colorectal Cancer Cells
0 -- 0Audrey Salles, Cyrille Billaudeau, Arnauld Sergé, Anne-Marie Bernard, Marie-Claire Phélipot, Nicolas Bertaux, Mathieu Fallet, Pierre Grenot, Didier Marguet, Hai-Tao He, Yannick Hamon. Barcoding T Cell Calcium Response Diversity with Methods for Automated and Accurate Analysis of Cell Signals (MAAACS)
0 -- 0Sulyman Barkho, Levi C. T. Pierce, Maria L. McGlone, Sheng Li, Virgil L. Woods Jr., Ross C. Walker, Joseph A. Adams, Patricia A. Jennings. Distal Loop Flexibility of a Regulatory Domain Modulates Dynamics and Activity of C-Terminal Src Kinase (Csk)
0 -- 0Tristan Ursell, Rosanna Man Wah Chau, Susanne Wisen, Devaki Bhaya, Kerwyn Casey Huang. Motility Enhancement through Surface Modification Is Sufficient for Cyanobacterial Community Organization during Phototaxis
0 -- 0John C. Williams, Jianjin Xu, Zhongju Lu, Aleksandra Klimas, Xuxin Chen, Christina M. Ambrosi, Ira S. Cohen, Emilia Entcheva. Computational Optogenetics: Empirically-Derived Voltage- and Light-Sensitive Channelrhodopsin-2 Model
0 -- 0Izzet B. Yildiz, Katharina von Kriegstein, Stefan J. Kiebel. From Birdsong to Human Speech Recognition: Bayesian Inference on a Hierarchy of Nonlinear Dynamical Systems
0 -- 0Geoff Macintyre, Magali Michaut, Thomas Abeel. The Regional Student Group Program of the ISCB Student Council: Stories from the Road
0 -- 0Yun M. Zhao, Anthony R. French. Mechanistic Model of Natural Killer Cell Proliferative Response to IL-15 Receptor Stimulation
0 -- 0Jianhui Song, Sheung Chun Ng, Peter Tompa, Kevin A. W. Lee, Hue Sun Chan. Polycation-π Interactions Are a Driving Force for Molecular Recognition by an Intrinsically Disordered Oncoprotein Family
0 -- 0Jing Chen, Zhen Hu, Mukta Phatak, John Reichard, Johannes M. Freudenberg, Siva Sivaganesan, Mario Medvedovic. Genome-Wide Signatures of Transcription Factor Activity: Connecting Transcription Factors, Disease, and Small Molecules
0 -- 0Laurence T. Hunt, Mark William Woolrich, Matthew F. S. Rushworth, Timothy Edward John Behrens. Trial-Type Dependent Frames of Reference for Value Comparison
0 -- 0Kobi Snitz, Adi Yablonka, Tali Weiss, Idan Frumin, Rehan M. Khan, Noam Sobel. Predicting Odor Perceptual Similarity from Odor Structure
0 -- 0Ben Mitchinson, Tony J. Prescott. Whisker Movements Reveal Spatial Attention: A Unified Computational Model of Active Sensing Control in the Rat
0 -- 0Vishal N. Patel, Giridharan Gokulrangan, Salim A. Chowdhury, YanWen Chen, Andrew E. Sloan, Mehmet Koyutürk, Jill S. Barnholtz-Sloan, Mark R. Chance. Network Signatures of Survival in Glioblastoma Multiforme
0 -- 0Giuseppe Maccari, Mariagrazia Di Luca, Riccardo Nifosí, Francesco Cardarelli, Giovanni Signore, Claudia Boccardi, Angelo Bifone. Antimicrobial Peptides Design by Evolutionary Multiobjective Optimization
0 -- 0Jing Tang, Leena Karhinen, Tao Xu, Agnieszka Szwajda, Bhagwan Yadav, Krister Wennerberg, Tero Aittokallio. Target Inhibition Networks: Predicting Selective Combinations of Druggable Targets to Block Cancer Survival Pathways
0 -- 0Danielle S. Bassett, Nicholas F. Wymbs, M. Puck Rombach, Mason A. Porter, Peter J. Mucha, Scott T. Grafton. Task-Based Core-Periphery Organization of Human Brain Dynamics
0 -- 0William Pontius, Michael W. Sneddon, Thierry Emonet. Adaptation Dynamics in Densely Clustered Chemoreceptors
0 -- 0Jorge F. Mejías, Gary Marsat, Kieran Bol, Leonard Maler, André Longtin. Learning Contrast-Invariant Cancellation of Redundant Signals in Neural Systems
0 -- 0Emek Demir, Özgün Babur, Igor Rodchenkov, Bülent Arman Aksoy, Ken I. Fukuda, Benjamin E. Gross, Selçuk Onur Sümer, Gary D. Bader, Chris Sander. Using Biological Pathway Data with Paxtools
0 -- 0Julia Lasserre, Ho-Ryun Chung, Martin Vingron. Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks
0 -- 0Andrew J. K. Phillips, B. D. Fulcher, Peter A. Robinson, E. B. Klerman. Mammalian Rest/Activity Patterns Explained by Physiologically Based Modeling
0 -- 0Noa Liscovitch, Gal Chechik. Specialization of Gene Expression during Mouse Brain Development
0 -- 0Stephen A. Smith, Joseph W. Brown, Cody E. Hinchliff. Analyzing and Synthesizing Phylogenies Using Tree Alignment Graphs
0 -- 0Kartik Subramanian, Mark R. Paul, John J. Tyson. Caulobacter crescentus
0 -- 0Anthony Mathelier, Wyeth W. Wasserman. The Next Generation of Transcription Factor Binding Site Prediction
0 -- 0Linhui Hao, Qiuling He, Zhishi Wang, Mark Craven, Michael A. Newton, Paul Ahlquist. Limited Agreement of Independent RNAi Screens for Virus-Required Host Genes Owes More to False-Negative than False-Positive Factors
0 -- 0Martin D. Vesper, Bert L. de Groot. Collective Dynamics Underlying Allosteric Transitions in Hemoglobin
0 -- 0Dilek Eren, Burak Alakent. Frequency Response of a Protein to Local Conformational Perturbations
0 -- 0Eddy J. Bautista, Joseph Zinski, Steven M. Szczepanek, Erik L. Johnson, Edan R. Tulman, Wei-Mei Ching, Steven J. Geary, Ranjan Srivastava. Mycoplasma gallisepticum
0 -- 0Ioannis N. Melas, Regina Samaga, Leonidas G. Alexopoulos, Steffen Klamt. Detecting and Removing Inconsistencies between Experimental Data and Signaling Network Topologies Using Integer Linear Programming on Interaction Graphs
0 -- 0Rudi Agius, Mieczyslaw Torchala, Iain H. Moal, Juan Fernández-Recio, Paul A. Bates. Characterizing Changes in the Rate of Protein-Protein Dissociation upon Interface Mutation Using Hotspot Energy and Organization
0 -- 0Johnatan Aljadeff, Ronen Segev, Michael J. Berry II, Tatyana O. Sharpee. Spike Triggered Covariance in Strongly Correlated Gaussian Stimuli
0 -- 0Javier Garcia-Bernardo, Mary J. Dunlop. Escherichia coli Multiple Antibiotic Resistance Network from Interlinked Positive and Negative Feedback Loops
0 -- 0Julián Candia, Ryan Maunu, Meghan K. Driscoll, Angélique Biancotto, Pradeep Dagur, J. Philip McCoy Jr., H. Nida Sen, Lai Wei, Amos Maritan, Kan Cao, Robert B. Nussenblatt, Jayanth R. Banavar, Wolfgang Losert. From Cellular Characteristics to Disease Diagnosis: Uncovering Phenotypes with Supercells
0 -- 0Alex Bateman, Janet Kelso, Daniel Mietchen, Geoff Macintyre, Tomás Di Domenico, Thomas Abeel, Darren W. Logan, Predrag Radivojac, Burkhard Rost. ISCB Computational Biology Wikipedia Competition