| 1 | -- | 0 | Ying Xu. Editorial from the New Editor-in-Chief |
| 2 | -- | 17 | Shubhra Sankar Ray, Sankar K. Pal. RNA Secondary Structure Prediction Using Soft Computing |
| 18 | -- | 25 | Teresa Piovesan, Steven Kelk. A Simple Fixed Parameter Tractable Algorithm for Computing the Hybridization Number of Two (Not Necessarily Binary) Trees |
| 26 | -- | 36 | Inken Wohlers, Rumen Andonov, Gunnar W. Klau. DALIX: Optimal DALI Protein Structure Alignment |
| 37 | -- | 49 | Carlos H. A. Higa, Tales P. Andrade, Ronaldo Fumio Hashimoto. Growing Seed Genes from Time Series Data and Thresholded Boolean Networks with Perturbation |
| 50 | -- | 60 | Daniele Muraro, Ute Vobeta, Michael Wilson, Malcolm Bennett, Helen M. Byrne, Ive De Smet, Charlie Hodgman, John King. Inference of the Genetic Network Regulating Lateral Root Initiation in Arabidopsis thaliana |
| 61 | -- | 72 | Cuong V. Than, Noah A. Rosenberg. Mathematical Properties of the Deep Coalescence Cost |
| 73 | -- | 86 | Peter Boyen, Frank Neven, Dries Van Dyck, Felipe L. Valentim, Aalt D. J. van Dijk. Mining Minimal Motif Pair Sets Maximally Covering Interactions in a Protein-Protein Interaction Network |
| 87 | -- | 97 | Jagath C. Rajapakse, Piyushkumar A. Mundra. Multiclass Gene Selection Using Pareto-Fronts |
| 98 | -- | 108 | Ye Yang, Farnoosh Abbas Aghababazadeh, David R. Bickel. Parametric Estimation of the Local False Discovery Rate for Identifying Genetic Associations |
| 109 | -- | 121 | Andrei Todor, Alin Dobra, Tamer Kahveci. Probabilistic Biological Network Alignment |
| 122 | -- | 134 | Priscila Biller, Pedro Feijão, João Meidanis. Rearrangement-Based Phylogeny Using the Single-Cut-or-Join Operation |
| 135 | -- | 150 | Apostolos Axenopoulos, Petros Daras, Georgios Papadopoulos, Elias Houstis. SP-Dock: Protein-Protein Docking Using Shape and Physicochemical Complementarity |
| 151 | -- | 160 | Stefan Grünewald, Andreas Spillner 0001, Sarah Bastkowski, Anja Bögershausen, Vincent Moulton. SuperQ: Computing Supernetworks from Quartets |
| 161 | -- | 172 | Itziar Irigoien, Francesc Mestres, Concepcion Arenas. The Depth Problem: Identifying the Most Representative Units in a Data Group |
| 173 | -- | 180 | Xia Wu, Juan Li, Napatkamon Ayutyanont, Hillary Protas, William J. Jagust, Adam Fleisher, Eric Reiman, Li Yao, Kewei Chen. The Receiver Operational Characteristic for Binary Classification with Multiple Indices and Its Application to the Neuroimaging Study of Alzheimer's Disease |
| 181 | -- | 192 | Guifang Shao, Fan Yang, Qian Zhang, Qifeng Zhou, Linkai Luo. Using the Maximum Between-Class Variance for Automatic Gridding of cDNA Microarray Images |
| 193 | -- | 199 | Alexis Lamiable, Franck Quessette, Sandrine Vial, Dominique Barth, Alain Denise. An Algorithmic Game-Theory Approach for Coarse-Grain Prediction of RNA 3D Structure |
| 200 | -- | 206 | Kristian Ovaska, Lauri Lyly, Biswajyoti Sahu, Olli A. Jänne, Sampsa Hautaniemi. Genomic Region Operation Kit for Flexible Processing of Deep Sequencing Data |
| 207 | -- | 212 | Xiang Wan, Can Yang, Qiang Yang, Hongyu Zhao, Weichuan Yu. HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies |
| 213 | -- | 218 | Mark Howison. High-Throughput Compression of FASTQ Data with SeqDB |
| 219 | -- | 225 | Yuan Zhu, Xiao-fei Zhang, Dao-Qing Dai, Meng-Yun Wu. Identifying Spurious Interactions and Predicting Missing Interactions in the Protein-Protein Interaction Networks via a Generative Network Model |
| 226 | -- | 229 | Aleksandar Poleksic. Improved Algorithms for Matching r-Separated Sets with Applications to Protein Structure Alignment |
| 230 | -- | 235 | Xiaowei Zhou, Can Yang, Xiang Wan, Hongyu Zhao, Weichuan Yu. Multisample aCGH Data Analysis via Total Variation and Spectral Regularization |
| 236 | -- | 239 | Alan Joseph J. Caceres, Juan Castillo, Jinnie Lee, Katherine St. John. Walks on SPR Neighborhoods |