| 273 | -- | 0 | Yi-Ping Phoebe Chen. Guest Editorial: Advanced Algorithms of Bioinformatics |
| 274 | -- | 285 | Jikai Lei, Prapaporn Techa-angkoon, Yanni Sun. Chain-RNA: A Comparative ncRNA Search Tool Based on the Two-Dimensional Chain Algorithm |
| 286 | -- | 299 | Pradipta Maji, Sushmita Paul. Rough-Fuzzy Clustering for Grouping Functionally Similar Genes from Microarray Data |
| 300 | -- | 307 | Ngoc Tu Le, Tu Bao Ho, Bich Hai Ho. Computational Reconstruction of Transcriptional Relationships from ChIP-Chip Data |
| 308 | -- | 309 | François Fages, Sylvain Soliman. Guest Editors' Introduction to the Special Section on Computational Methods in Systems Biology |
| 310 | -- | 322 | Thomas A. Henzinger, Maria Mateescu. The Propagation Approach for Computing Biochemical Reaction Networks |
| 323 | -- | 336 | Abhishek Murthy, Ezio Bartocci, Flavio H. Fenton, James Glimm, Richard A. Gray, Elizabeth Cherry, Scott A. Smolka, Radu Grosu. Curvature Analysis of Cardiac Excitation Wavefronts |
| 337 | -- | 351 | Qian Gao, David Gilbert, Monika Heiner, Fei Liu, Daniele Maccagnola, David Tree. Multiscale Modeling and Analysis of Planar Cell Polarity in the Drosophila Wing |
| 352 | -- | 360 | Serdar Bozdag, Timothy J. Close, Stefano Lonardi. A Graph-Theoretical Approach to the Selection of the Minimum Tiling Path from a Physical Map |
| 361 | -- | 371 | Cheng-Hong Yang, Yu-Da Lin, Li-Yeh Chuang, Hsueh-Wei Chang. Evaluation of Breast Cancer Susceptibility Using Improved Genetic Algorithms to Generate Genotype SNP Barcodes |
| 372 | -- | 382 | Jiaoyun Yang, Yun Xu, Xiaohui Yao, Guoliang Chen. FNphasing: A Novel Fast Heuristic Algorithm for Haplotype Phasing Based on Flow Network Model |
| 383 | -- | 392 | Cosmin Lazar, Jonatan Taminau, Stijn Meganck, David Steenhoff, Alain Coletta, David Y. Weiss Solís, Colin Molter, Robin Duque, Hugues Bersini, Ann Nowé. GENESHIFT: A Nonparametric Approach for Integrating Microarray Gene Expression Data Based on the Inner Product as a Distance Measure between the Distributions of Genes |
| 393 | -- | 400 | Camilla Bernardini, Federica Censi, Wanda Lattanzi, Giovanni Calcagnini, Alessandro Giuliani. Gene Regulation Networks in Early Phase of Duchenne Muscular Dystrophy |
| 401 | -- | 414 | Ariel E. Bayá, Pablo M. Granitto. How Many Clusters: A Validation Index for Arbitrary-Shaped Clusters |
| 415 | -- | 422 | Qingfeng Chen, Wei Lan, Jianxin Wang. Mining Featured Patterns of MiRNA Interaction Based on Sequence and Structure Similarity |
| 423 | -- | 435 | Ujjwal Maulik, Anirban Mukhopadhyay 0001, Malay Bhattacharyya, Lars Kaderali, Benedikt Brors, Sanghamitra Bandyopadhyay, Roland Eils. Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach |
| 436 | -- | 446 | Xiao Wang, Guo-Zheng Li. Multilabel Learning via Random Label Selection for Protein Subcellular Multilocations Prediction |
| 447 | -- | 456 | Yifeng Li, Alioune Ngom. Nonnegative Least-Squares Methods for the Classification of High-Dimensional Biological Data |
| 457 | -- | 467 | Hong-Jie Yu, De-Shuang Huang. Normalized Feature Vectors: A Novel Alignment-Free Sequence Comparison Method Based on the Numbers of Adjacent Amino Acids |
| 468 | -- | 480 | Chien-Ta Tu, Bor-Sen Chen. On the Increase in Network Robustness and Decrease in Network Response Ability during the Aging Process: A Systems Biology Approach via Microarray Data |
| 481 | -- | 493 | Kevin W. Deronne, George Karypis. Pareto Optimal Pairwise Sequence Alignment |
| 494 | -- | 503 | Tsung-Heng Tsai, Mahlet G. Tadesse, Yue Joseph Wang, Habtom W. Ressom. Profile-Based LC-MS Data Alignment-A Bayesian Approach |
| 504 | -- | 513 | Ali Gholami Rudi, Saeed Shahrivari, Saeed Jalili, Zahra Razaghi Moghadam Kashani. RANGI: A Fast List-Colored Graph Motif Finding Algorithm |
| 514 | -- | 521 | Wei Liu, Dong Li, Yunping Zhu, Hongwei Xie, Fuchu He. Reconstruction of Signaling Network from Protein Interactions Based on Function Annotations |
| 522 | -- | 536 | Pawel Górecki, Oliver Eulenstein, Jerzy Tiuryn. Unrooted Tree Reconciliation: A Unified Approach |
| 537 | -- | 543 | Nader Meskin, Hazem N. Nounou, Mohamed N. Nounou, Aniruddha Datta. Parameter Estimation of Biological Phenomena: An Unscented Kalman Filter Approach |