| 817 | -- | 818 | Marcilio C. P. de Souto, Maricel Kann. Guest Editorial for Special Section on BSB 2012 |
| 819 | -- | 831 | Pedro Feijão, João Meidanis. Extending the Algebraic Formalism for Genome Rearrangements to Include Linear Chromosomes |
| 832 | -- | 844 | Ronny Lorenz, Stephan H. F. Bernhart, Jing Qin, Christian Höner zu Siederdissen, Andrea Tanzer, Fabian Amman, Ivo L. Hofacker, Peter F. Stadler. 2D Meets 4G: G-Quadruplexes in RNA Secondary Structure Prediction |
| 845 | -- | 857 | Pablo A. Jaskowiak, Ricardo J. G. B. Campello, Ivan G. Costa. Proximity Measures for Clustering Gene Expression Microarray Data: A Validation Methodology and a Comparative Analysis |
| 858 | -- | 868 | Surajit Panja, Sourav Patra, Anirban Mukherjee, Madhumita Basu, Sanghamitra Sengupta, Pranab K. Dutta. A Closed-Loop Control Scheme for Steering Steady States of Glycolysis and Glycogenolysis Pathway |
| 869 | -- | 883 | Oyku Eren Ozsoy, Tolga Can. A Divide and Conquer Approach for Construction of Large-Scale Signaling Networks from PPI and RNAi Data Using Linear Programming |
| 884 | -- | 896 | Ken D. Nguyen, Yi Pan. A Knowledge-Based Multiple-Sequence Alignment Algorithm |
| 897 | -- | 904 | Lishuang Li, Wenting Fan, Degen Huang. A Two-Phase Bio-NER System Based on Integrated Classifiers and Multiagent Strategy |
| 905 | -- | 913 | Nan Liu, Haitao Jiang, Daming Zhu, Binhai Zhu. An Improved Approximation Algorithm for Scaffold Filling to Maximize the Common Adjacencies |
| 914 | -- | 926 | Mouli Das, C. A. Murthy, Rajat K. De. An Optimization Rule for In Silico Identification of Targeted Overproduction in Metabolic Pathways |
| 927 | -- | 938 | Chao Luo, Xingyuan Wang. Algebraic Representation of Asynchronous Multiple-Valued Networks and Its Dynamics |
| 939 | -- | 956 | Mukul S. Bansal, Oliver Eulenstein. Algorithms for Genome-Scale Phylogenetics Using Gene Tree Parsimony |
| 957 | -- | 969 | Ádám M. Halász, Hong-Jian Lai, Meghan McCabe Pryor, Krishnan Radhakrishnan, Jeremy S. Edwards. Analytical Solution of Steady-State Equations for Chemical Reaction Networks with Bilinear Rate Laws |
| 970 | -- | 983 | Andrei Todor, Alin Dobra, Tamer Kahveci. Characterizing the Topology of Probabilistic Biological Networks |
| 984 | -- | 993 | Onur Seref, J. Paul Brooks, Stephen S. Fong. Decomposition of Flux Distributions into Metabolic Pathways |
| 994 | -- | 1008 | Dong-jun Yu, Jun Hu, Jing Yang, Hong-bin Shen, Jinhui Tang, Jing-yu Yang. Designing Template-Free Predictor for Targeting Protein-Ligand Binding Sites with Classifier Ensemble and Spatial Clustering |
| 1009 | -- | 1016 | Sergio Torres-Sánchez, Nuria Medina-Medina, Christopher Gignoux, María M. Abad-Grau, Esteban Gonzàlez Burchard. GeneOnEarth: Fitting Genetic PC Plots on the Globe |
| 1017 | -- | 1031 | Yuan Zhu, Weiqiang Zhou, Dao-Qing Dai, Hong Yan. Identification of DNA-Binding and Protein-Binding Proteins Using Enhanced Graph Wavelet Features |
| 1032 | -- | 1044 | Claudio Angione, Giovanni Carapezza, Jole Costanza, Pietro Liò, Giuseppe Nicosia. Pareto Optimality in Organelle Energy Metabolism Analysis |
| 1045 | -- | 1057 | Guo-Xian Yu, Huzefa Rangwala, Carlotta Domeniconi, Guoji Zhang, Zhiwen Yu. Protein Function Prediction Using Multilabel Ensemble Classification |
| 1058 | -- | 1070 | José Ignacio Requeno, Gregorio de Miguel Casado, Roberto Blanco, José Manuel Colom. Temporal Logics for Phylogenetic Analysis via Model Checking |
| 1071 | -- | 1075 | Farid Rajabli, Ünal Göktas, Gul Inan. Application of Dempster-Schafer Method in Family-Based Association Studies |
| 1076 | -- | 1079 | Kevaughn Gordon, Eric Ford, Katherine St. John. Hamiltonian Walks of Phylogenetic Treespaces |
| 1080 | -- | 1085 | Tianwei Yu, Hesen Peng. Hierarchical Clustering of High- Throughput Expression Data Based on General Dependences |