| 1 | -- | 0 | Kuan-Liang Liu, Tzu-Tsung Wong. Naïve Bayesian Classifiers with Multinomial Models for rRNA Taxonomic Assignment |
| 1089 | -- | 1090 | Tamer Kahveci, Mona Singh. Guest Editorial for ACM BCB |
| 1091 | -- | 1097 | Reginaldo Kuroshu. Nonoverlapping Clone Pooling for High-Throughput Sequencing |
| 1098 | -- | 1112 | K. S. M. Tozammel Hossain, Debprakash Patnaik, Srivatsan Laxman, Prateek Jain 0002, Chris Bailey-Kellogg, Naren Ramakrishnan. Improved Multiple Sequence Alignments Using Coupled Pattern Mining |
| 1113 | -- | 1124 | Ahsanur Rahman, Christopher L. Poirel, David Badger, Craig Estep, T. M. Murali. Reverse Engineering Molecular Hypergraphs |
| 1125 | -- | 1136 | Mehmet Umut Caglar, Ranadip Pal. Stochastic Model Simulation Using Kronecker Product Analysis and Zassenhaus Formula Approximation |
| 1137 | -- | 1149 | Ming-Chi Tsai, Guy E. Blelloch, R. Ravi, Russell Schwartz. Coalescent-Based Method for Learning Parameters of Admixture Events from Large-Scale Genetic Variation Data |
| 1150 | -- | 1161 | Oben M. Tataw, G. Venugopala Reddy, Eamonn J. Keogh, Amit K. Roy Chowdhury. Quantitative Analysis of Live-Cell Growth at the Shoot Apex of Arabidopsis thaliana: Algorithms for Feature Measurement and Temporal Alignment |
| 1162 | -- | 1175 | Kevin Molloy, Sameh Saleh, Amarda Shehu. Probabilistic Search and Energy Guidance for Biased Decoy Sampling in Ab Initio Protein Structure Prediction |
| 1176 | -- | 1187 | Yao-ming Huang, Chris Bystroff. Expanded Explorations into the Optimization of an Energy Function for Protein Design |
| 1188 | -- | 1198 | Seth Blumenthal, Yisheng Tang, Wenjie Yang, Brian Chen. Isolating Influential Regions of Electrostatic Focusing in Protein and DNA Structure |
| 1201 | -- | 1210 | Pavel P. Kuksa. Biological Sequence Classification with Multivariate String Kernels |
| 1211 | -- | 1217 | Said Bleik, Meenakshi Mishra, Jun Huan, Min Song. Text Categorization of Biomedical Data Sets Using Graph Kernels and a Controlled Vocabulary |
| 1218 | -- | 1233 | Su Yan, W. Scott Spangler, Ying Chen. Chemical Name Extraction Based on Automatic Training Data Generation and Rich Feature Set |
| 1234 | -- | 1240 | Liliana Florea, Steven L. Salzberg. Genome-Guided Transcriptome Assembly in the Age of Next-Generation Sequencing |
| 1241 | -- | 1252 | Devendra K. Shakya, Rajiv Saxena, Sanjeev N. Sharma. An Adaptive Window Length Strategy for Eukaryotic CDS Prediction |
| 1253 | -- | 1262 | Noah A. Rosenberg. Coalescent Histories for Caterpillar-Like Families |
| 1275 | -- | 1288 | Sebastian Wandelt, Ulf Leser. FRESCO: Referential Compression of Highly Similar Sequences |
| 1289 | -- | 1298 | Kamal Al-Nasr, Chunmei Liu, Mugizi Robert Rwebangira, Legand Burge, Jing He. Intensity-Based Skeletonization of CryoEM Gray-Scale Images Using a True Segmentation-Free Algorithm |
| 1299 | -- | 1309 | Li-Yeh Chuang, Cheng-Huei Yang, Jui-Hung Tsai, Cheng-Hong Yang. Operon Prediction Using Chaos Embedded Particle Swarm Optimization |
| 1322 | -- | 1328 | Yoram Zarai, Michael Margaliot, Tamir Tuller. Explicit Expression for the Steady-State Translation Rate in the Infinite-Dimensional Homogeneous Ribosome Flow Model |
| 1340 | -- | 1343 | Christian Bach, Prabir Patra, Jani M. Pallis, William Sherman, Hassan Bajwa. Strategy for Naturelike Designer Transcription Factors with Reduced Toxicity |