| 1 | -- | 4 | Ying Xu. Editorial from the Editor-in-Chief |
| 5 | -- | 6 | Frank Eisenhaber, Wing-Kin Sung, Limsoon Wong. Guest Editorial for the International Conference on Genome Informatics (GIW 2013) |
| 7 | -- | 16 | Liang Zhao, Steven C. H. Hoi, Zhenhua Li, Limsoon Wong, Hung Nguyen, Jinyan Li. Coupling Graphs, Efficient Algorithmsand B-Cell Epitope Prediction |
| 17 | -- | 25 | Ying Fan, Ruoshui Lu, Lusheng Wang, Massimo Andreatta, Shuai Cheng Li. Quantifying Significance of MHC II Residues |
| 26 | -- | 32 | Paul D. Yoo, Sami Muhaidat, Kamal Taha, Jamal Bentahar, Abdallah Shami. Intelligent Consensus Modeling for ProlineCis-Trans Isomerization Prediction |
| 33 | -- | 41 | Laleh Soltan Ghoraie, Forbes Burkowski, Shuai Cheng Li, Mu Zhu. Residue-Specific Side-Chain Polymorphismsvia Particle Belief Propagation |
| 42 | -- | 54 | Ruiqi Liao, Ruichang Zhang, Jihong Guan, Shuigeng Zhou. A New Unsupervised Binning Approachfor Metagenomic Sequences Based onN-grams and Automatic Feature Weighting |
| 55 | -- | 62 | Jui-Chen Hsiao, Chih-Hsuan Wei, Hung-Yu Kao. Gene Name Disambiguation UsingMulti-Scope Species Detection |
| 63 | -- | 72 | Jing Guo, Ritika Jain, Peng Yang, Rui Fan, Chee Keong Kwoh, Jie Zheng. Reliable and Fast Estimation of Recombination Rates by Convergence Diagnosis and Parallel Markov Chain Monte Carlo |
| 73 | -- | 82 | Yanglan Gan, Jihong Guan, Shuigeng Zhou, Weixiong Zhang. Identifying Cis-Regulatory Elements and Modules Using Conditional Random Fields |
| 83 | -- | 94 | Sriganesh Srihari, Venkatesh Raman, Hon Wai Leong, Mark A. Ragan. Evolution and Controllability of CancerNetworks: A Boolean Perspective |
| 95 | -- | 115 | Sanghamitra Bandyopadhyay, Saurav Mallik, Anirban Mukhopadhyay 0001. A Survey and Comparative Study of Statistical Tests for Identifying Differential Expressionfrom Microarray Data |
| 116 | -- | 127 | Sanghamitra Bandyopadhyay, Koushik Mallick. A New Path Based Hybrid Measurefor Gene Ontology Similarity |
| 128 | -- | 141 | Fahad Saeed, Jason D. Hoffert, Mark A. Knepper. CAMS-RS: Clustering Algorithm for Large-Scale Mass Spectrometry Data Using Restricted Search Space and Intelligent Random Sampling |
| 142 | -- | 153 | Biing-Feng Wang, Chien-Hsin Lin, I.-Tse Yang. Constructing a Gene Team Treein Almost $O$$(n\; {\rm lg}\; n)$ Time |
| 154 | -- | 167 | Mitsunori Kayano, Motoki Shiga, Hiroshi Mamitsuka. Detecting Differentially Coexpressed Genesfrom Labeled Expression Data: A Brief Review |
| 168 | -- | 181 | Vangelis Metsis, Fillia Makedon, Dinggang Shen, Heng Huang. DNA Copy Number Selection Using Robust Structured Sparsity-Inducing Norms |
| 182 | -- | 191 | Sandhya Prabhakaran, Mélanie Rey, Osvaldo Zagordi, Niko Beerenwinkel, Volker Roth. HIV Haplotype Inference Using a Propagating Dirichlet Process Mixture Model |
| 192 | -- | 201 | Leyi Wei, Minghong Liao, Yue Gao, Rongrong Ji, Zengyou He, Quan Zou. Improved and Promising Identificationof Human MicroRNAs by Incorporatinga High-Quality Negative Set |
| 202 | -- | 218 | Mohammad Shahrokh Esfahani, Edward R. Dougherty. Incorporation of Biological PathwayKnowledge in the Construction of Priorsfor Optimal Bayesian Classification |
| 219 | -- | 230 | Mika Amit, Rolf Backofen, Steffen Heyne, Gad M. Landau, Mathias Möhl, Christina Otto, Sebastian Will. Local Exact Pattern Matching for Non-FixedRNA Structures |
| 231 | -- | 242 | Pawel Górecki, Oliver Eulenstein. Maximizing Deep Coalescence Cost |
| 243 | -- | 257 | Jun Sun 0008, Vasile Palade, Xiaojun Wu, Wei Fang. Multiple Sequence Alignment with HiddenMarkov Models Learned by Random DriftParticle Swarm Optimization |
| 258 | -- | 264 | John Healy, Desmond Chambers. Approximate k-Mer Matching UsingFuzzy Hash Maps |
| 265 | -- | 0 | Guo-Xian Yu, Huzefa Rangwala, Carlotta Domeniconi, Guoji Zhang, Zhiwen Yu. Erratum to "Protein Function Prediction Using Multilabel Ensemble Classification" |