Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 12, Issue 6

1217 -- 1218Hsien-Da Huang, Yi-Ping Phoebe Chen. Guest Editorial for the 13th Asia Pacific Bioinformatics Conference
1219 -- 1226Liang Cheng, Jie Li, Yang Hu, Yue Jiang, Yongzhuang Liu, Yan-Shuo Chu, Zhenxing Wang, Yadong Wang. Using Semantic Association to Extend and Infer Literature-Oriented Relativity Between Terms
1227 -- 1235Nicolas Wieseke, Tom Hartmann, Matthias Bernt, Martin Middendorf. Cophylogenetic Reconciliation with ILP
1236 -- 1247Huidong Chen, Jihong Guan, Shuigeng Zhou. DPNuc: Identifying Nucleosome Positions Based on the Dirichlet Process Mixture Model
1248 -- 1254Nan Gao, Yan Zhang, Bing Feng, Jijun Tang. A Cooperative Co-Evolutionary Genetic Algorithm for Tree Scoring and Ancestral Genome Inference
1255 -- 1266Minzhu Xie, Jianxin Wang, Xin Chen. LGH: A Fast and Accurate Algorithm for Single Individual Haplotyping Based on a Two-Locus Linkage Graph
1267 -- 1274Shotaro Kumozaki, Kengo Sato, Yasubumi Sakakibara. A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum
1275 -- 1285Xiaojing Xie, Shuigeng Zhou, Jihong Guan. CoGI: Towards Compressing Genomes as an Image
1286 -- 1294Beichen Wang, Xiaodong Chen, Hiroshi Mamitsuka, Shanfeng Zhu. BMExpert: Mining MEDLINE for Finding Experts in Biomedical Domains Based on Language Model
1295 -- 1303Han Li, Chun Li, Jie Hu, Xiaodan Fan. A Resampling Based Clustering Algorithm for Replicated Gene Expression Data
1304 -- 1321Mohammad Shahrokh Esfahani, Edward R. Dougherty. An Optimization-Based Framework for the Transformation of Incomplete Biological Knowledge into a Probabilistic Structure and Its Application to the Utilization of Gene/Protein Signaling Pathways in Discrete Phenotype Classification
1322 -- 1332Kin-On Cheng, Paula Wu, Ngai-Fong Law, Wan-Chi Siu. Compression of Multiple DNA Sequences Using Intra-Sequence and Inter-Sequence Similarities
1333 -- 1344Le Ou-Yang, Dao-Qing Dai, Xiao-fei Zhang. Detecting Protein Complexes from Signed Protein-Protein Interaction Networks
1345 -- 1354Alexandru I. Tomescu, Travis Gagie, Alexandru Popa, Romeo Rizzi, Anna Kuosmanen, Veli Mäkinen. Explaining a Weighted DAG with Few Paths for Solving Genome-Guided Multi-Assembly
1355 -- 1364Chandrabhan Seniya, Ajay Yadav, G. J. Khan, Nand K. Sah. In-silico Studies Show Potent Inhibition of HIV-1 Reverse Transcriptase Activity by a Herbal Drug
1365 -- 1373Mariano Rubiolo, Diego H. Milone, Georgina Stegmayer. Mining Gene Regulatory Networks by Neural Modeling of Expression Time-Series
1374 -- 1384Bo Liao, Yan Jiang, Wei Liang, Lihong Peng, Li Peng, Damien Hanyurwimfura, Zejun Li, Min Chen. On Efficient Feature Ranking Methods for High-Throughput Data Analysis
1385 -- 1393Xin Ma, Jing Guo, Ke Xiao, Xiao Sun. PRBP: Prediction of RNA-Binding Proteins Using a Random Forest Algorithm Combined with an RNA-Binding Residue Predictor
1394 -- 1404Brijesh Kumar Sriwastava, Subhadip Basu, Ujjwal Maulik. Predicting Protein-Protein Interaction Sites with a Novel Membership Based Fuzzy SVM Classifier
1405 -- 1415Ehsan Ullah, Mark Walker, Kyongbum Lee, Soha Hassoun. PreProPath: An Uncertainty-Aware Algorithm for Identifying Predictable Profitable Pathways in Biochemical Networks
1416 -- 1428Ka Chun Wong, Chengbin Peng, Yue Li. Probabilistic Inference on Multiple Normalized Signal Profiles from Next Generation Sequencing: Transcription Factor Binding Sites
1429 -- 1439Alon Raveh, Yoram Zarai, Michael Margaliot, Tamir Tuller. Ribosome Flow Model on a Ring
1440 -- 1448Mohammadreza Sehhati, Alireza Mehri Dehnavi, Hossein Rabbani, Meraj Pourhossein. Stable Gene Signature Selection for Prediction of Breast Cancer Recurrence Using Joint Mutual Information
1449 -- 1456Hao Zhang, Xing-Yuan Wang, Xiao-Hui Lin. Synchronization of Asynchronous Switched Boolean Network
1457 -- 1463T. Sengupta, M. Bhushan, Pramod P. Wangikar. A Computational Approach Using Ratio Statistics for Identifying Housekeeping Genes from cDNA Microarray Data
1464 -- 1469Prachi Pradeep, Craig A. Struble, Terrence Neumann, Daniel S. Sem, Stephen J. Merrill. A Novel Scoring Based Distributed Protein Docking Application to Improve Enrichment
1470 -- 1478Babette Dellen, Hanno Scharr, Carme Torras. Growth Signatures of Rosette Plants from Time-Lapse Video
1479 -- 1484Torbjörn Wigren. Model Order and Identifiability of Non-Linear Biological Systems in Stable Oscillation