Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 14, Issue 6

1202 -- 1213Ahmad Al Kawam, Sunil Khatri, Aniruddha Datta. A Survey of Software and Hardware Approaches to Performing Read Alignment in Next Generation Sequencing
1214 -- 1227Utku Sirin, Faruk Polat, Reda Alhajj. Batch Mode TD(λ) for Controlling Partially Observable Gene Regulatory Networks
1228 -- 1236Biji C. L., Achuthsankar S. Nair. Benchmark Dataset for Whole Genome Sequence Compression
1237 -- 1250Francisco do Nascimento, Katia S. Guimarães. Copy Number Variations Detection: Unravelling the Problem in Tangible Aspects
1251 -- 1264Stefano Ceri, Abdulrahman Kaitoua, Marco Masseroli, Pietro Pinoli, Francesco Venco. Data Management for Heterogeneous Genomic Datasets
1265 -- 1275Amin Ahmadi-Adl, Hye-Seung Lee, Xiaoning Qian. Detecting Pairwise Interactive Effects of Continuous Random Variables for Biomarker Identification with Small Sample Size
1276 -- 1287Nivit Grewal, Shailendra Singh, Trilok Chand. Effect of Aggregation Operators on Network-Based Disease Gene Prioritization: A Case Study on Blood Disorders
1288 -- 1301Gui-jun Zhang, Xiao-gen Zhou, Xufeng Yu, Xiao-hu Hao, Li Yu. Enhancing Protein Conformational Space Sampling Using Distance Profile-Guided Differential Evolution
1302 -- 1315David Oliveira Aparício, Pedro Manuel Pinto Ribeiro, Fernando M. A. Silva. Extending the Applicability of Graphlets to Directed Networks
1316 -- 1326Georgina Stegmayer, Cristian A. Yones, Laura Kamenetzky, Diego H. Milone. High Class-Imbalance in pre-miRNA Prediction: A Novel Approach Based on deepSOM
1327 -- 1338Abbas Akkasi, Ekrem Varoglu. Improving Biochemical Named Entity Recognition Using PSO Classifier Selection and Bayesian Combination Methods
1339 -- 1349Arne T. Bittig, Adelinde M. Uhrmacher. ML-Space: Hybrid Spatial Gillespie and Particle Simulation of Multi-Level Rule-Based Models in Cell Biology
1350 -- 1358Mingon Kang, Juyoung Park, Dong-Chul Kim, Ashis Kumer Biswas, Chunyu Liu, Jean Gao. Multi-Block Bipartite Graph for Integrative Genomic Analysis
1359 -- 1365Grady Weyenberg, Ruriko Yoshida, Daniel K. Howe. Normalizing Kernels in the Billera-Holmes-Vogtmann Treespace
1366 -- 1377Yuchun Ding, Marie Christine Pardon, Alessandra Agostini, Henryk Faas, Jinming Duan, Wil O. C. Ward, Felicity Easton, Dorothee Auer, Li Bai. Novel Methods for Microglia Segmentation, Feature Extraction, and Classification
1378 -- 1388Daniel M. Savel, Thomas LaFramboise, Ananth Grama, Mehmet Koyutürk. Pluribus - Exploring the Limits of Error Correction Using a Suffix Tree
1389 -- 1398Jun Hu, Yang Li, Ming Zhang, Xibei Yang, Hong-bin Shen, Dong-jun Yu. Predicting Protein-DNA Binding Residues by Weightedly Combining Sequence-Based Features and Boosting Multiple SVMs
1399 -- 1409Jiancheng Zhong, Jianxin Wang, Xiaojun Ding, Zhen Zhang, Min Li 0007, Fang-Xiang Wu, Yi Pan 0001. Protein Inference from the Integration of Tandem MS Data and Interactome Networks
1410 -- 1418Deqing Gu, Xingxing Jian, Cheng Zhang 0002, Qiang Hua. Reframed Genome-Scale Metabolic Model to Facilitate Genetic Design and Integration with Expression Data
1419 -- 1433Pradipta Maji, Ekta Shah. Significance and Functional Similarity for Identification of Disease Genes
1434 -- 1445Zhen Qi, Eberhard O. Voit. Strategies for Comparing Metabolic Profiles: Implications for the Inference of Biochemical Mechanisms from Metabolomics Data
1446 -- 1458Shahin Mohammadi, David F. Gleich, Tamara G. Kolda, Ananth Grama. Triangular Alignment (TAME): A Tensor-Based Approach for Higher-Order Network Alignment
1459 -- 1467Yun Liu, Tao Hou, Bing Kang, Fu Liu. Unsupervised Binning of Metagenomic Assembled Contigs Using Improved Fuzzy C-Means Method
1468 -- 1475Jiawei Luo, Pingjian Ding, Cheng Liang, Buwen Cao, Xiangtao Chen. Collective Prediction of Disease-Associated miRNAs Based on Transduction Learning
1476 -- 1481Maxime Dureau, Angelo Alessandri, Patrizia Bagnerini, Stéphane Vincent. Modeling and Identification of Amnioserosa Cell Mechanical Behavior by Using Mass-Spring Lattices
1482 -- 1488Pietro Lovato, Marco Cristani, Manuele Bicego. Soft Ngram Representation and Modeling for Protein Remote Homology Detection