| 251 | -- | 0 | Aidong Zhang. Editorial from the New Editor-in-Chief |
| 252 | -- | 253 | Illhoi Yoo, Amarda Shehu. Guest Editorial for Special Section on BIBM 2014 |
| 254 | -- | 263 | En-Shiun Annie Lee, Ho-Yin Antonio Sze-To, Man Hon Wong, Kwong-Sak Leung, Terrence Chi Kong Lau, Andrew K. C. Wong. Discovering Protein-DNA Binding Cores by Aligned Pattern Clustering |
| 264 | -- | 271 | Yong Zhang, Xiaohua Hu, Xingpeng Jiang. Multi-View Clustering of Microbiome Samples by Robust Similarity Network Fusion and Spectral Clustering |
| 272 | -- | 281 | Ilona Kifer, Rui M. Branca, Amir Ben-Dor, Linhui Zhai, Ping Xu, Janne Lehtiö, Zohar Yakhini. Optimizing Analytical Depth and Cost Efficiency of IEF-LC/MS Proteomics |
| 282 | -- | 289 | Huiru Zheng, Chaoyang Wang, Haiying Wang. Analysis of Organization of the Interactome Using Dominating Sets: A Case Study on Cell Cycle Interaction Networks |
| 290 | -- | 299 | Matthias Becker, Nadia Magnenat-Thalmann. Muscle Tissue Labeling of Human Lower Limb in Multi-Channel mDixon MR Imaging: Concepts and Applications |
| 300 | -- | 313 | Daniel Veltri, Uday Kamath, Amarda Shehu. Improving Recognition of Antimicrobial Peptides and Target Selectivity through Machine Learning and Genetic Programming |
| 314 | -- | 315 | Mitra Basu, Yi Pan, Jianxin Wang. Guest Editors Introduction to the Special Section on ISBRA 2014 |
| 316 | -- | 325 | Fa Zhang, Yu Chen, Fei Ren, Xuan Wang, Zhiyong Liu, Xiaohua Wan. A Two-Phase Improved Correlation Method for Automatic Particle Selection in Cryo-EM |
| 326 | -- | 336 | Yi Liu, Bin Ma, Kaizhong Zhang, Gilles A. Lajoie. An Approach for Peptide Identification by De Novo Sequencing of Mixture Spectra |
| 337 | -- | 344 | Yan Yan, Anthony J. Kusalik, Fang-Xiang Wu. NovoExD: De novo Peptide Sequencing for ETD/ECD Spectra |
| 345 | -- | 352 | Lin Zhu, Suping Deng, Zhu-Hong You, De-Shuang Huang. Identifying Spurious Interactions in the Protein-Protein Interaction Networks Using Local Similarity Preserving Embedding |
| 353 | -- | 359 | Xingpeng Jiang, Xiaohua Hu, Weiwei Xu. Microbiome Data Representation by Joint Nonnegative Matrix Factorization with Laplacian Regularization |
| 360 | -- | 369 | Wei Peng, Min Li, Lu Chen, Lusheng Wang. Predicting Protein Functions by Using Unbalanced Random Walk Algorithm on Three Biological Networks |
| 370 | -- | 380 | Min Li, Yu Lu, Zhibei Niu, Fang-Xiang Wu. United Complex Centrality for Identification of Essential Proteins from PPI Networks |
| 381 | -- | 392 | Behrang Mahjani, Salman Zubair Toor, Carl Nettelblad, Sverker Holmgren. A Flexible Computational Framework Using R and Map-Reduce for Permutation Tests of Massive Genetic Analysis of Complex Traits |
| 393 | -- | 403 | Van-Nui Nguyen, Kai-Yao Huang, Chien-Hsun Huang, K. Robert Lai, Tzong-Yi Lee. A New Scheme to Characterize and Identify Protein Ubiquitination Sites |
| 404 | -- | 417 | Julia Matsieva, Steven Kelk, Céline Scornavacca, Chris Whidden, Dan Gusfield. A Resolution of the Static Formulation Question for the Problem of Computing the History Bound |
| 418 | -- | 430 | Ashok Rajaraman, João Paulo Pereira Zanetti, Ján Manuch, Cédric Chauve. Algorithms and Complexity Results for Genome Mapping Problems |
| 431 | -- | 442 | Kieran Alden, Jon Timmis, Paul S. Andrews, Henrique Veiga-Fernandes, Mark Coles. Extending and Applying Spartan to Perform Temporal Sensitivity Analyses for Predicting Changes in Influential Biological Pathways in Computational Models |
| 443 | -- | 456 | Oscar Días, Daniel Gomes, Paulo Vilaça, João Cardoso, Miguel Rocha, Eugénio C. Ferreira, Isabel Rocha. Genome-Wide Semi-Automated Annotation of Transporter Systems |
| 457 | -- | 467 | Katya Mkrtchyan, Anirban Chakraborty, Amit K. Roy Chowdhury. Optimal Landmark Selection for Registration of 4D Confocal Image Stacks in Arabidopsis |
| 468 | -- | 471 | Momoko Hayamizu, Hiroshi Endo, Kenji Fukumizu. A Characterization of Minimum Spanning Tree-Like Metric Spaces |
| 472 | -- | 477 | Olivier Boes, Mareike Fischer, Steven Kelk. A Linear Bound on the Number of States in Optimal Convex Characters for Maximum Parsimony Distance |
| 478 | -- | 483 | Thao Thi Phuong Nguyen, Le Sy Vinh, Hai Bich Ho, Si Quang Le. Building Ancestral Recombination Graphs for Whole Genomes |
| 484 | -- | 490 | Emmanouil Athanasiadis, Marilena M. Bourdakou, George M. Spyrou. D-Map: Random Walking on Gene Network Inference Maps Towards differential Avenue Discovery |
| 491 | -- | 497 | Stéphane Mottelet, Gil Gaullier, Georges Sadaka. Metabolic Flux Analysis in Isotope Labeling Experiments Using the Adjoint Approach |
| 498 | -- | 500 | Scott Goldweber, Jamal Theodore, John Torcivia-Rodriguez, Vahan Simonyan, Raja Mazumder. Pubcast and Genecast: Browsing and Exploring Publications and Associated Curated Content in Biology Through Mobile Devices |