Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 16, Issue 3

701 -- 702Carlos Martín-Vide, Miguel A. Vega-Rodríguez. Algorithms for Computational Biology: Third Edition
703 -- 712Syed Ali Ahmed, Saad Mneimneh. Gibbs/MCMC Sampling for Multiple RNA Interaction with Sub-Optimal Solutions
713 -- 726Agnieszka Mykowiecka, Pawel Górecki. Credibility of Evolutionary Events in Gene Trees
727 -- 737David Sankoff, Chunfang Zheng, Yue Zhang, Joao Meidanis, Eric Lyons, Haibao Tang. Models for Similarity Distributions of Syntenic Homologs and Applications to Phylogenomics
738 -- 748Laura Urbini, Blerina Sinaimeri, Catherine Matias, Marie-France Sagot. Exploring the Robustness of the Parsimonious Reconciliation Method in Host-Symbiont Cophylogeny
749 -- 750De-Shuang Huang, Vitoantonio Bevilacqua, M. Michael Gromiha. Guest Editorial for Special Section on the 13th International Conference on Intelligent Computing (ICIC)
751 -- 763Jyotsna Talreja Wassan, Haiying Wang, Fiona Browne, Huiru Zheng. A Comprehensive Study on Predicting Functional Role of Metagenomes Using Machine Learning Methods
764 -- 773Min Li 0007, Li Tang, Zhongxiang Liao, Junwei Luo, Fang-Xiang Wu, Yi Pan 0001, Jianxin Wang. A Novel Scaffolding Algorithm Based on Contig Error Correction and Path Extension
774 -- 781Xiaolong Zhang 0002, Xiaoli Lin, Jiafu Zhao, Qianqian Huang, Xin Xu. Efficiently Predicting Hot Spots in PPIs by Combining Random Forest and Synthetic Minority Over-Sampling Technique
782 -- 791Lin Yuan, Le-Hang Guo, Chang-an Yuan 0001, Youhua Zhang, Kyungsook Han, Asoke K. Nandi, Barry Honig, De-Shuang Huang. Integration of Multi-Omics Data for Gene Regulatory Network Inference and Application to Breast Cancer
792 -- 800Su-Ping Deng, Wei-Li Guo. Identifying Key Genes of Liver Cancer by Networking of Multiple Data Sets
801 -- 808Peng Wu, Dong Wang. Classification of a DNA Microarray for Diagnosing Cancer Using a Complex Network Based Method
809 -- 817Zhu-Hong You, Wenzhun Huang, Shanwen Zhang, Yu-An Huang, Changqing Yu, Li-ping Li. An Efficient Ensemble Learning Approach for Predicting Protein-Protein Interactions by Integrating Protein Primary Sequence and Evolutionary Information
818 -- 826Hua Zhong, Mingzhou Song. A Fast Exact Functional Test for Directional Association and Cancer Biology Applications
827 -- 840Sandip Samaddar, Rituparna Sinha, Rajat K. De. A Model for Distributed Processing and Analyses of NGS Data under Map-Reduce Paradigm
841 -- 850Dongdong Sun, Minghui Wang, Ao Li. A Multimodal Deep Neural Network for Human Breast Cancer Prognosis Prediction by Integrating Multi-Dimensional Data
851 -- 864Michiel Van Dyck, Xavier Woot de Trixhe, An Vermeulen, Wim Vanroose. A Robust Simulator for Physiologically Structured Population Models
865 -- 873Maryam Sharifi, Arta A. Jamshidi, Nazanin Namazi Sarvestani. An Adaptive Robust Control Strategy in a Cancer Tumor-Immune System Under Uncertainties
874 -- 885Loris Nanni, Sheryl Brahnam, Stefano Ghidoni, Alessandra Lumini. Bioimage Classification with Handcrafted and Learned Features
886 -- 897Haoyu Cheng, Yong Zhang, Yun Xu. BitMapper2: A GPU-Accelerated All-Mapper Based on the Sparse q-Gram Index
898 -- 911Chris Whidden, Frederick A. Matsen IV. Calculating the Unrooted Subtree Prune-and-Regraft Distance
912 -- 924Pei Wang 0004, Daojie Wang, Jinhu Lu. Controllability Analysis of a Gene Network for Arabidopsis thaliana Reveals Characteristics of Functional Gene Families
925 -- 935Sven Thiele, Sandra Heise, Wiebke Hessenkemper, Hannes Bongartz, Melissa Fensky, Fred Schaper, Steffen Klamt. Designing Optimal Experiments to Discriminate Interaction Graph Models
936 -- 941Yi-Yan Zhang, Qin Li, Yi Xin, Wei-Qi Lv. Differentiating Prostate Cancer from Benign Prostatic Hyperplasia Using PSAD Based on Machine Learning: Single-Center Retrospective Study in China
942 -- 953Dimitrios Kaloudas, Nikolet Pavlova, Robert Penchovsky. EBWS: Essential Bioinformatics Web Services for Sequence Analyses
954 -- 966Bo Xu 0009, Hongfei Lin, Yuan Lin 0001. Learning to Refine Expansion Terms for Biomedical Information Retrieval Using Semantic Resources
967 -- 979Tiantian He, Keith C. C. Chan. Measuring Boundedness for Protein Complex Identification in PPI Networks
980 -- 993Aiguo Wang, Ye Chen, Ning An, Jing Yang 0008, Lian Li 0001, Lili Jiang. Microarray Missing Value Imputation: A Regularized Local Learning Method
994 -- 1006You Song, Siyu Yang, Jinzhi Lei. ParaCells: A GPU Architecture for Cell-Centered Models in Computational Biology
1007 -- 1019Mohammad Nazrul Ishlam Patoary, Carl Tropper, Robert A. McDougal, Zhongwei Lin, William W. Lytton. Parallel Stochastic Discrete Event Simulation of Calcium Dynamics in Neuron
1020 -- 1028Chao Fang, Yi Shang, Dong Xu 0002. Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks
1029 -- 1035Gregor Urban, Kevin Bache, Duc T. T. Phan, Agua Sobrino, Alexander Shmakov, Stephanie J. Hachey, Christopher C. W. Hughes, Pierre Baldi. Deep Learning for Drug Discovery and Cancer Research: Automated Analysis of Vascularization Images
1036 -- 1041Kumar Saurabh Singh, Bartlomiej J. Troczka, Katherine Beadle, Linda M. Field, T. G. Emyr Davies, Martin S. Williamson, Ralf Nauen, Chris Bass. Extension of Partial Gene Transcripts by Iterative Mapping of RNA-Seq Raw Reads
1042 -- 1048Jia-Juan Tu, Le Ou-Yang, Xiaohua Hu, Xiao-fei Zhang. Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data