Journal: IEEE/ACM Trans. Comput. Biology Bioinform.

Volume 17, Issue 6

1832 -- 1834Da Yan 0001, Xin Gao 0001, Samah J. Fodeh, Jake Y. Chen. Guest Editorial for Selected Papers from BIOKDD 2018 and DMBIH 2018
1835 -- 1845Michael Sokolovsky, Francisco Guerrero, Sarun Paisarnsrisomsuk, Carolina Ruiz, Sergio A. Alvarez. Deep Learning for Automated Feature Discovery and Classification of Sleep Stages
1846 -- 1857Matthew B. A. McDermott, Jennifer Wang, Wen-Ning Zhao, Steven Sheridan, Peter Szolovits, Isaac S. Kohane, Stephen J. Haggarty, Roy H. Perlis. Deep Learning Benchmarks on L1000 Gene Expression Data
1858 -- 1870Jingyi Zheng, Fushing Hsieh, Linqiang Ge. A Data-Driven Approach to Predict and Classify Epileptic Seizures from Brain-Wide Calcium Imaging Video Data
1871 -- 1882Hongming Xu, SunHo Park, Tae-Hyun Hwang. Computerized Classification of Prostate Cancer Gleason Scores from Whole Slide Images
1883 -- 1894Shreyasi Pathak, Jorit van Rossen, Onno Vijlbrief, Jeroen Geerdink, Christin Seifert, Maurice van Keulen. Post-Structuring Radiology Reports of Breast Cancer Patients for Clinical Quality Assurance
1895 -- 1906Enrique Noriega-Atala, Paul Douglas Hein, Shraddha Satish Thumsi, Zechy Wong, Xia Wang, Sean M. Hendryx, Clayton T. Morrison. Extracting Inter-Sentence Relations for Associating Biological Context with Events in Biomedical Texts
1907 -- 1917Jonathon A. Gibbs, Michael P. Pound, Andrew P. French, Darren M. Wells, Erik H. Murchie, Tony P. Pridmore. Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling
1918 -- 1931Xiaoyang Jing, Qiwen Dong, Daocheng Hong, Ruqian Lu. Amino Acid Encoding Methods for Protein Sequences: A Comprehensive Review and Assessment
1932 -- 1945Soumya Paul, Cui Su, Jun Pang 0001, Andrzej Mizera. An Efficient Approach Towards the Source-Target Control of Boolean Networks
1946 -- 1954Letu Qingge, Killian Smith, Sean Jungst, Baihui Wang, Qing Yang 0003, Binhai Zhu. Approaching the One-Sided Exemplar Adjacency Number Problem
1955 -- 1965Mohammad Bozlul Karim, Ming Huang 0002, Naoaki Ono, Shigehiko Kanaya, Md. Altaf-Ul-Amin. BiClusO: A Novel Biclustering Approach and Its Application to Species-VOC Relational Data
1966 -- 1980Guang-Hui Liu, Bei-Wei Zhang, Gang Qian, Bin Wang 0041, Bo Mao, Isabelle Bichindaritz. Bioimage-Based Prediction of Protein Subcellular Location in Human Tissue with Ensemble Features and Deep Networks
1981 -- 1993Nicola Paoletti, Kin Sum Liu, hongkai Chen, Scott A. Smolka, Shan Lin. Data-Driven Robust Control for a Closed-Loop Artificial Pancreas
1994 -- 2004Jian Liu, Qiuru Liu, Lei Zhang, Shuhui Su, Yongzhuang Liu. Enabling Massive XML-Based Biological Data Management in HBase
2005 -- 2016Pratik Dutta, Sriparna Saha 0001, Saraansh Chopra, Varnika Miglani. Ensembling of Gene Clusters Utilizing Deep Learning and Protein-Protein Interaction Information
2017 -- 2028Lun Hu, Pengwei Hu, Xin Luo 0001, Xiaohui Yuan, Zhu-Hong You. Incorporating the Coevolving Information of Substrates in Predicting HIV-1 Protease Cleavage Sites
2029 -- 2039Xinyi Yu, Wenge Rong, Jingshuang Liu, Deyu Zhou, Yuanxin Ouyang, Zhang Xiong. LSTM-Based End-to-End Framework for Biomedical Event Extraction
2040 -- 2052Ehsan Kazemi 0001, Matthias Grossglauser. MPGM: Scalable and Accurate Multiple Network Alignment
2053 -- 2061Wei Zhang 0079, Jia Xu 0002, Xiufen Zou. Predicting Essential Proteins by Integrating Network Topology, Subcellular Localization Information, Gene Expression Profile and GO Annotation Data
2062 -- 2073Zengyou He, Can Zhao, Hao Liang, Bo Xu 0008, Quan Zou 0001. Protein Complexes Identification with Family-Wise Error Rate Control
2074 -- 2085Midusha Shrestha, Truong X. Tran, Bidhan Bhattarai, Marc L. Pusey, Ramazan S. Aygün. Schema Matching and Data Integration with Consistent Naming on Protein Crystallization Screens
2086 -- 2097Thomas C. Carroll, Jude-Thaddeus Ojiaku, Prudence W. H. Wong. Semiglobal Sequence Alignment with Gaps Using GPU
2098 -- 2106Shun-ichi Azuma, Toshimitsu Kure, Toshiharu Sugie. Structural Bistability Analysis of Flower-Shaped and Chain-Shaped Boolean Networks
2107 -- 2118John A. Rhodes. Topological Metrizations of Trees, and New Quartet Methods of Tree Inference
2119 -- 2130Gui-jun Zhang, Xiao-Qi Wang, Lai-Fa Ma, Liu-Jing Wang, Jun Hu, Xiao-gen Zhou. Two-Stage Distance Feature-based Optimization Algorithm for De novo Protein Structure Prediction
2131 -- 2140Adeola Ogunleye, Qing-Guo Wang. XGBoost Model for Chronic Kidney Disease Diagnosis
2141 -- 2147Matteo Manica, Raphael Polig, Mitra Purandare, Roland Mathis, Christoph Hagleitner, María Rodríguez Martínez. FPGA Accelerated Analysis of Boolean Gene Regulatory Networks
2148 -- 2154Ming Xiao, Xiangyu Yang, Jun Yu, Le Zhang 0004. CGIDLA: Developing the Web Server for CpG Island Related Density and LAUPs (Lineage-Associated Underrepresented Permutations) Study
2155 -- 2161Manuela Petti, Daniele Bizzarri, Antonella Verrienti, Rosa Falcone, Lorenzo Farina. Connectivity Significance for Disease Gene Prioritization in an Expanding Universe
2162 -- 2169Le Ou-Yang, Xiao-fei Zhang, Xiaohua Hu, Hong Yan 0001. Differential Network Analysis via Weighted Fused Conditional Gaussian Graphical Model
2170 -- 2175Yadong Dong, Yongqi Sun, Chao Qin, Weiguo Zhu. EPMDA: Edge Perturbation Based Method for miRNA-Disease Association Prediction
2176 -- 2182Yixin Wang, Md. Noor-A.-Rahim, Jingyun Zhang, Erry Gunawan, Yong Liang Guan 0001, Chueh-Loo Poh. Oligo Design with Single Primer Binding Site for High Capacity DNA-Based Data Storage
2183 -- 2188Rajkumar Chakraborty, Yasha Hasija. Predicting MicroRNA Sequence Using CNN and LSTM Stacked in Seq2Seq Architecture
2189 -- 2195Michael Schmidt, Kay Hamacher, Felix Reinhardt, Thea S. Lotz, Florian Groher, Beatrix Suess, Sven Jager. SICOR: Subgraph Isomorphism Comparison of RNA Secondary Structures
2196 -- 0Jong Ho Jhee, Sunjoo Bang, Dong-Gi Lee, Hyunjung Shin. Corrections to "Comorbidity Scoring With Causal Disease Networks"
2197 -- 0Jin Zhao 0005, Haodi Feng, Daming Zhu, Chi Zhang, Ying Xu. Corrections to "IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads"